RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 ITGA11Q9UKX5 1188 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 DNPEPQ9ULA0 475 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 BARX2Q9UMQ3 279 aaPredicted RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 UBQLN1Q9UMX0 589 aaKnown RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 SNX24Q9Y343 169 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 SNX10Q9Y5X0 201 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 CSNK1G3Q9Y6M4 447 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 MUC6Q6W4X9 2439 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 GVINP1Q7Z2Y8 2422 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 NRCAMQ92823 1304 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 RIF1Q5UIP0 2472 aaKnown RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 COL5A1P20908 1838 aaPredicted RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 URB1O60287 2271 aaKnown RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 AHCTF1Q8WYP5 2266 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 GPR179Q6PRD1 2367 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 AKAP13Q12802 2813 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 RP1L1Q8IWN7 2480 aaPredicted RBP1.3□□□□□ -2.2
CCDC39-203ENST00000473854 PHF3Q92576 2039 aaKnown RBP1.3□□□□□ -2.2
CCDC39-203ENST00000473854 MGAQ8IWI9 3026 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 MED12Q93074 2177 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 DOCK10Q96BY6 2186 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 CACNA1CQ13936 2221 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 A0A0U1RQG5 324 aaPredicted RBP1.3□□□□□ -2.2
CCDC39-203ENST00000473854 SMIM28A0A1B0GU29 152 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 PRSS51A0A1B0GVH4 220 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 MYBPHLA2RUH7 354 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 LRRD1A4D1F6 860 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 ARL5CA6NH57 179 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 SMIM23A6NLE4 172 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 SIGLEC16A6NMB1 481 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 AGAP14A8MT82 685 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 GOLGA8KD6RF30 607 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 E7ESA3 106 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 APOC4-APOC2K7ER74 178 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 AP3D1O14617 1153 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 DNALI1O14645 258 aaPredicted RBP1.3□□□□□ -2.2
CCDC39-203ENST00000473854 XPO1O14980 1071 aaKnown RBP1.3□□□□□ -2.2
CCDC39-203ENST00000473854 MCF2LO15068 1137 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 VILLO15195 856 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 EIF3HO15372 352 aaKnown RBP eCLIP1.3□□□□□ -2.2
CCDC39-203ENST00000473854 HS6ST1O60243 411 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 UGT1A9O60656 530 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 HSF2BPO75031 334 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 RPS6KA5O75582 802 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 PIAS1O75925 651 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 TPPPO94811 219 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 ACSL3O95573 720 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 TRUB2O95900 331 aaKnown RBP1.3□□□□□ -2.2
CCDC39-203ENST00000473854 OAS1P00973 400 aaKnown RBP1.3□□□□□ -2.2
CCDC39-203ENST00000473854 IGLV3-25P01717 112 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 APOC2P02655 101 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 FYNP06241 537 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 RB1P06400 928 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 ASGR1P07306 291 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 ABHD2P08910 425 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 CLTBP09497 229 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 NUDT17P0C025 328 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 OR4Q2P0C623 313 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 VDRP11473 427 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 KRT3P12035 628 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 TMEM11P17152 192 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 GOT1P17174 413 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 GABRB1P18505 474 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 KDELR1P24390 212 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 CYP2F1P24903 491 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 NMBRP28336 390 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 PCK1P35558 622 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 SLC1A1P43005 524 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 MAGEA3P43357 314 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 SLCO1A2P46721 670 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 BRCC3P46736 316 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 SULT1E1P49888 294 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 CAMPP49913 170 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 CDH6P55285 790 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 B3GALT5-AS1P59052 145 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 DAOAP59103 153 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 GPX6P59796 221 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 YWHAEP62258 255 aaKnown RBP1.3□□□□□ -2.2
CCDC39-203ENST00000473854 SNRPEP62304 92 aaKnown RBP1.3□□□□□ -2.2
CCDC39-203ENST00000473854 GNGT1P63211 74 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 IFI35P80217 286 aaPredicted RBP1.3□□□□□ -2.2
CCDC39-203ENST00000473854 RBP5P82980 135 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 ROR1Q01973 937 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 GBE1Q04446 702 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 ADIGQ0VDE8 80 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 BST2Q10589 180 aaKnown RBP1.3□□□□□ -2.2
CCDC39-203ENST00000473854 KCNJ11Q14654 390 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 PPP1R7Q15435 360 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 DLG2Q15700 870 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 DPYSL2Q16555 572 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 PTGISQ16647 500 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 UPP1Q16831 310 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 DNAJC21Q5F1R6 531 aaKnown RBP1.3□□□□□ -2.2
CCDC39-203ENST00000473854 MDH1BQ5I0G3 518 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 RAB41Q5JT25 222 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 CLLU1OSQ5K130 101 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 CFAP58Q5T655 872 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 LIN9Q5TKA1 542 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 AGBL2Q5U5Z8 902 aa1.3□□□□□ -2.2
CCDC39-203ENST00000473854 LRRC38Q5VT99 294 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms