RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 MYOGP15173 224 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 TNNI3P19429 210 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 ITGB7P26010 798 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 EVI2BP34910 448 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 HAAOP46952 286 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 CDC42P60953 191 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 RRAS2P62070 204 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-207ENST00000553837 POLR2GP62487 172 aaKnown RBP eCLIP11.6□□□□□ -0.55
SHMT2-207ENST00000553837 SCRN3Q0VDG4 424 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 PPIGQ13427 754 aaKnown RBP eCLIP11.6□□□□□ -0.553e-8■□□□□ 10.3
SHMT2-207ENST00000553837 VEZF1Q14119 521 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 SPIN4Q56A73 249 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 IGSF11Q5DX21 431 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 RAET1GQ6H3X3 334 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 ARSKQ6UWY0 536 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 SLC44A2Q8IWA5 706 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-207ENST00000553837 PLA2G15Q8NCC3 412 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 FBXO15Q8NCQ5 510 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-207ENST00000553837 OR10G2Q8NGC3 310 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 OR4A15Q8NGL6 344 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 CREB3L4Q8TEY5 395 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 BADQ92934 168 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 SLC25A46Q96AG3 418 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 NUS1Q96E22 293 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 WDR34Q96EX3 536 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 MSLNLQ96KJ4 702 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 FAM129BQ96TA1 746 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 SORBS1Q9BX66 1292 aaKnown RBP11.6□□□□□ -0.55
SHMT2-207ENST00000553837 MCOLN1Q9GZU1 580 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 TMEM168Q9H0V1 697 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 EPHX3Q9H6B9 360 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 PRM3Q9NNZ6 103 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 DMRT3Q9NQL9 472 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 RBFOX1Q9NWB1 397 aaKnown RBP11.6□□□□□ -0.55
SHMT2-207ENST00000553837 ACSL6Q9UKU0 697 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 DIMT1Q9UNQ2 313 aaKnown RBP11.6□□□□□ -0.55
SHMT2-207ENST00000553837 MUC22E2RYF6 1773 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-207ENST00000553837 PRAMEF25A6NGN4 478 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 WASHC1A8K0Z3 465 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 SUV39H1O43463 412 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 HCN1O60741 890 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 TNFRSF21O75509 655 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 POP7O75817 140 aaKnown RBP11.6□□□□□ -0.55
SHMT2-207ENST00000553837 OPN1SWP03999 348 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 C1GALT1C1LP0DN25 315 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 PRKAR1AP10644 381 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 ACADLP28330 430 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 CRYBB2P43320 205 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 GPR1P46091 355 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 ASMTP46597 345 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 PER3P56645 1201 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 ST8SIA6P61647 398 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 IKZF1Q13422 519 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 COL13A1Q5TAT6 717 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-207ENST00000553837 DDI2Q5TDH0 399 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 C11orf96Q7Z7L8 435 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 KIF18BQ86Y91 864 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 LAS2Q8IYD9 372 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 CELF5Q8N6W0 485 aaKnown RBP11.6□□□□□ -0.55
SHMT2-207ENST00000553837 CLDN22Q8N7P3 220 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 OR9A1PQ8NGU1 263 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 ZDHHC5Q9C0B5 715 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 MIXL1Q9H2W2 232 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 GMEB2Q9UKD1 530 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 ELF5Q9UKW6 265 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-207ENST00000553837 SLC27A6Q9Y2P4 619 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 ZNF451Q9Y4E5 1061 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 AP1M2Q9Y6Q5 423 aa11.6□□□□□ -0.55
SHMT2-207ENST00000553837 HYKKA2RU49 373 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 LINC01553A4QN01 128 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 I3L521 148 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 BTN3A3O00478 584 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 RNASET2O00584 256 aaKnown RBP11.59□□□□□ -0.55
SHMT2-207ENST00000553837 ORC5O43913 435 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 TSC22D2O75157 780 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 OR5F1O95221 314 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 C6orf47O95873 294 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 IL1AP01583 271 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 HNRNPA1P09651 372 aaKnown RBP eCLIP11.59□□□□□ -0.55
SHMT2-207ENST00000553837 PIPP12273 146 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-207ENST00000553837 ADRB3P13945 408 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 WSCD2Q2TBF2 565 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 HNRNPA1L2Q32P51 320 aaKnown RBP11.59□□□□□ -0.55
SHMT2-207ENST00000553837 FNDC3BQ53EP0 1204 aaKnown RBP11.59□□□□□ -0.55
SHMT2-207ENST00000553837 TMEM240Q5SV17 173 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 GARNL3Q5VVW2 1013 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 FAM180BQ6P0A1 224 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 PLEKHM3Q6ZWE6 761 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 TRMT11Q7Z4G4 463 aaKnown RBP11.59□□□□□ -0.55
SHMT2-207ENST00000553837 C9orf62Q8N4C0 152 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 OR9Q1Q8NGQ5 310 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 TRMT61AQ96FX7 289 aaKnown RBP11.59□□□□□ -0.55
SHMT2-207ENST00000553837 REEP4Q9H6H4 257 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 SLC39A1Q9NY26 324 aa11.59□□□□□ -0.55
SHMT2-207ENST00000553837 A8MVJ9 347 aa11.58□□□□□ -0.56
SHMT2-207ENST00000553837 HEPACAM2A8MVW5 462 aa11.58□□□□□ -0.56
SHMT2-207ENST00000553837 SLC43A1O75387 559 aa11.58□□□□□ -0.56
SHMT2-207ENST00000553837 CCNB2O95067 398 aa11.58□□□□□ -0.56
SHMT2-207ENST00000553837 CDRT1O95170 752 aa11.58□□□□□ -0.56
SHMT2-207ENST00000553837 TBX6O95947 436 aaPredicted RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms