RNA–Protein interactions for RNA: snR38

snR38, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR38, Length 95 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR38	snR38	YFL054C	P43549	646 aa		0.67	□□□□□ -2.3
snR38	snR38	MRK1	P50873	501 aa		0.67	□□□□□ -2.3
snR38	snR38	HFM1	P51979	1187 aa		0.67	□□□□□ -2.3
snR38	snR38	NMA2	P53204	395 aa		0.67	□□□□□ -2.3
snR38	snR38	LSC1	P53598	329 aa	Known RBP	0.67	□□□□□ -2.3
snR38	snR38	CDA1	Q06702	301 aa		0.67	□□□□□ -2.3
snR38	snR38	NOC3	Q07896	663 aa	Predicted RBP	0.67	□□□□□ -2.3
snR38	snR38	BI4	P03879	638 aa		0.66	□□□□□ -2.3
snR38	snR38	EUG1	P32474	517 aa		0.66	□□□□□ -2.3
snR38	snR38	SRP101	P32916	621 aa		0.66	□□□□□ -2.3
snR38	snR38	TTI1	P36097	1038 aa		0.66	□□□□□ -2.3
snR38	snR38	CIC1	P38779	376 aa	Known RBP	0.66	□□□□□ -2.3
snR38	snR38	ULP2	P40537	1034 aa	Predicted RBP	0.66	□□□□□ -2.3
snR38	snR38	PSA1	P41940	361 aa	Known RBP	0.66	□□□□□ -2.3
snR38	snR38	HFD1	Q04458	532 aa		0.66	□□□□□ -2.3
snR38	snR38	PEX19	Q07418	342 aa		0.66	□□□□□ -2.3
snR38	snR38	ACM1	Q08981	209 aa		0.66	□□□□□ -2.3
snR38	snR38	DED1	P06634	604 aa	Known RBP	0.65	□□□□□ -2.31
snR38	snR38	TUB3	P09734	445 aa	Known RBP	0.65	□□□□□ -2.31
snR38	snR38	TAF13	P11747	167 aa		0.65	□□□□□ -2.31
snR38	snR38	APN1	P22936	367 aa		0.65	□□□□□ -2.31
snR38	snR38	PEX6	P33760	1030 aa		0.65	□□□□□ -2.31
snR38	snR38	SPC97	P38863	823 aa		0.65	□□□□□ -2.31
snR38	snR38	GEM1	P39722	662 aa		0.65	□□□□□ -2.31
snR38	snR38	UBP7	P40453	1071 aa		0.65	□□□□□ -2.31
snR38	snR38	SAM37	P50110	327 aa		0.65	□□□□□ -2.31
snR38	snR38	AAT1	Q01802	451 aa		0.65	□□□□□ -2.31
snR38	snR38	NUP53	Q03790	475 aa		0.65	□□□□□ -2.31
snR38	snR38	XYL2	Q07993	356 aa		0.65	□□□□□ -2.31
snR38	snR38	SGO1	Q08490	590 aa		0.65	□□□□□ -2.31
snR38	snR38	TAF3	Q12297	353 aa		0.65	□□□□□ -2.31
snR38	snR38	TRM11	Q12463	433 aa		0.65	□□□□□ -2.31
snR38	snR38	YER152C	P10356	443 aa		0.64	□□□□□ -2.31
snR38	snR38	PXL1	P36166	706 aa		0.64	□□□□□ -2.31
snR38	snR38	GLO3	P38682	493 aa	Known RBP	0.64	□□□□□ -2.31
snR38	snR38	YGL176C	P46945	554 aa		0.64	□□□□□ -2.31
snR38	snR38	YJL163C	P46996	555 aa		0.64	□□□□□ -2.31
snR38	snR38	AMA1	P50082	593 aa		0.64	□□□□□ -2.31
snR38	snR38	ERG5	P54781	538 aa		0.64	□□□□□ -2.31
snR38	snR38	UPC2	Q12151	913 aa		0.64	□□□□□ -2.31
snR38	snR38	PUP1	P25043	261 aa		0.63	□□□□□ -2.31
snR38	snR38	EMP70	P32802	667 aa		0.63	□□□□□ -2.31
snR38	snR38	SPC29	P33419	253 aa		0.63	□□□□□ -2.31
snR38	snR38	CTF13	P35203	478 aa		0.63	□□□□□ -2.31
snR38	snR38	DUN1	P39009	513 aa		0.63	□□□□□ -2.31
snR38	snR38	BOL3	P39724	118 aa		0.63	□□□□□ -2.31
snR38	snR38	YGL140C	P53120	1219 aa		0.63	□□□□□ -2.31
snR38	snR38	SMX3	P54999	86 aa	Predicted RBP	0.63	□□□□□ -2.31
snR38	snR38	TRS120	Q04183	1289 aa		0.63	□□□□□ -2.31
snR38	snR38	WHI4	Q07655	649 aa	Known RBP	0.63	□□□□□ -2.31
snR38	snR38	GLG1	P36143	616 aa		0.62	□□□□□ -2.31
snR38	snR38	YBR139W	P38109	508 aa		0.62	□□□□□ -2.31
snR38	snR38	ECM21	P38167	1117 aa	Known RBP	0.62	□□□□□ -2.31
snR38	snR38	BDH2	P39713	417 aa		0.62	□□□□□ -2.31
snR38	snR38	YAP1802	P53309	568 aa		0.62	□□□□□ -2.31
snR38	snR38	ULP1	Q02724	621 aa		0.62	□□□□□ -2.31
snR38	snR38	SMA2	Q04658	369 aa		0.62	□□□□□ -2.31
snR38	snR38	ORM2	Q06144	216 aa		0.62	□□□□□ -2.31
snR38	snR38	RPA135	P22138	1203 aa	Known RBP	0.61	□□□□□ -2.31
snR38	snR38	YOX1	P34161	385 aa		0.61	□□□□□ -2.31
snR38	snR38	QDR1	P40475	563 aa		0.61	□□□□□ -2.31
snR38	snR38	ENT3	P47160	408 aa		0.61	□□□□□ -2.31
snR38	snR38	HSV2	P50079	448 aa	Predicted RBP	0.61	□□□□□ -2.31
snR38	snR38	MUP1	P50276	574 aa		0.61	□□□□□ -2.31
snR38	snR38	UBC9	P50623	157 aa	Predicted RBP	0.61	□□□□□ -2.31
snR38	snR38	TEL2	P53038	688 aa		0.61	□□□□□ -2.31
snR38	snR38	SCW4	P53334	386 aa	Known RBP	0.61	□□□□□ -2.31
snR38	snR38	FMP30	Q02883	468 aa		0.61	□□□□□ -2.31
snR38	snR38	YTH1	Q06102	208 aa	Predicted RBP	0.61	□□□□□ -2.31
snR38	snR38	SWM1	Q12379	170 aa		0.61	□□□□□ -2.31
snR38	snR38	PHO2	P07269	559 aa		0.6	□□□□□ -2.31
snR38	snR38	MLS1	P30952	554 aa		0.6	□□□□□ -2.31
snR38	snR38	RPC82	P32349	654 aa		0.6	□□□□□ -2.31
snR38	snR38	PRP40	P33203	583 aa	Known RBP	0.6	□□□□□ -2.31
snR38	snR38	SAP190	P36123	1033 aa		0.6	□□□□□ -2.31
snR38	snR38	ARC40	P38328	384 aa	Known RBP	0.6	□□□□□ -2.31
snR38	snR38	FAA2	P39518	744 aa		0.6	□□□□□ -2.31
snR38	snR38	FMP52	P40008	231 aa		0.6	□□□□□ -2.31
snR38	snR38	ARG2	P40360	574 aa		0.6	□□□□□ -2.31
snR38	snR38	NDC80	P40460	691 aa		0.6	□□□□□ -2.31
snR38	snR38	CTR1	P49573	406 aa		0.6	□□□□□ -2.31
snR38	snR38	IRC3	Q06683	689 aa		0.6	□□□□□ -2.31
snR38	snR38	RPL11A	P0C0W9	174 aa	Known RBP	0.59	□□□□□ -2.31
snR38	snR38	CPS1	P27614	576 aa		0.59	□□□□□ -2.31
snR38	snR38	FUN30	P31380	1131 aa		0.59	□□□□□ -2.31
snR38	snR38	SLA2	P33338	968 aa		0.59	□□□□□ -2.31
snR38	snR38	HIS7	P33734	552 aa	Known RBP	0.59	□□□□□ -2.31
snR38	snR38	MUP3	P38734	546 aa		0.59	□□□□□ -2.31
snR38	snR38	MXR1	P40029	184 aa		0.59	□□□□□ -2.31
snR38	snR38	CCT7	P42943	550 aa	Known RBP	0.59	□□□□□ -2.31
snR38	snR38	CNN1	P43618	361 aa		0.59	□□□□□ -2.31
snR38	snR38	ACF4	P47129	309 aa		0.59	□□□□□ -2.31
snR38	snR38	EAF1	Q06337	982 aa		0.59	□□□□□ -2.31
snR38	snR38	YLL058W	Q12198	575 aa		0.59	□□□□□ -2.31
snR38	snR38	RPL11B	Q3E757	174 aa	Predicted RBP	0.59	□□□□□ -2.31
snR38	snR38	SYP1	P25623	870 aa	Known RBP	0.58	□□□□□ -2.32
snR38	snR38	CCR4	P31384	837 aa	Known RBP	0.58	□□□□□ -2.32
snR38	snR38	STE14	P32584	239 aa		0.58	□□□□□ -2.32
snR38	snR38	PIN4	P34217	668 aa	Known RBP RIP-Chip data	0.58	□□□□□ -2.32	not detected
snR38	snR38	YBR053C	P38235	358 aa		0.58	□□□□□ -2.32

Retrieved 100 of 5,963 RNA–protein pairs in 47 ms