RNA–Protein interactions for RNA: YPR110C

RPC40, Transcript of RNA polymerase subunit AC40, yeast

Gene RPC40, Length 1,008 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPC40	YPR110C	RAD53	P22216	821 aa		4.11	□□□□□ -1.75
RPC40	YPR110C	ABZ1	P37254	787 aa	Predicted RBP	4.11	□□□□□ -1.75
RPC40	YPR110C	YER158C	P40095	573 aa		4.11	□□□□□ -1.75
RPC40	YPR110C	SEC26	P41810	973 aa	Known RBP	4.11	□□□□□ -1.75
RPC40	YPR110C	HFM1	P51979	1187 aa		4.11	□□□□□ -1.75
RPC40	YPR110C	ENV11	P53246	860 aa		4.11	□□□□□ -1.75
RPC40	YPR110C	YGR283C	P53336	341 aa	Predicted RBP	4.11	□□□□□ -1.75
RPC40	YPR110C	GCD1	P09032	578 aa	Predicted RBP	4.1	□□□□□ -1.75
RPC40	YPR110C	RPL8A	P17076	256 aa	Known RBP	4.1	□□□□□ -1.75
RPC40	YPR110C	ADP1	P25371	1049 aa		4.1	□□□□□ -1.75
RPC40	YPR110C	CDC48	P25694	835 aa	Known RBP	4.1	□□□□□ -1.75
RPC40	YPR110C	SPC29	P33419	253 aa		4.1	□□□□□ -1.75
RPC40	YPR110C	EMC3	P36039	253 aa		4.1	□□□□□ -1.75
RPC40	YPR110C	ERT1	P38140	529 aa		4.1	□□□□□ -1.75
RPC40	YPR110C	PTC7	P38797	343 aa		4.1	□□□□□ -1.75
RPC40	YPR110C	YAP1801	P38856	637 aa		4.1	□□□□□ -1.75
RPC40	YPR110C	YGR130C	P53278	816 aa		4.1	□□□□□ -1.75
RPC40	YPR110C	ATP25	Q03153	612 aa		4.1	□□□□□ -1.75
RPC40	YPR110C	SSY1	Q03770	852 aa		4.1	□□□□□ -1.75
RPC40	YPR110C	SIZ1	Q04195	904 aa		4.1	□□□□□ -1.75
RPC40	YPR110C	SPS1	P08458	490 aa		4.09	□□□□□ -1.75
RPC40	YPR110C	SRM1	P21827	482 aa		4.09	□□□□□ -1.75
RPC40	YPR110C	GSY1	P23337	708 aa		4.09	□□□□□ -1.75
RPC40	YPR110C	MEF1	P25039	761 aa		4.09	□□□□□ -1.75
RPC40	YPR110C	ECM21	P38167	1117 aa	Known RBP	4.09	□□□□□ -1.75
RPC40	YPR110C	RFC5	P38251	354 aa		4.09	□□□□□ -1.75
RPC40	YPR110C	GTS1	P40956	396 aa		4.09	□□□□□ -1.75
RPC40	YPR110C	TY4A-J	P47023	414 aa		4.09	□□□□□ -1.75
RPC40	YPR110C	DAM1	P53267	343 aa		4.09	□□□□□ -1.75
RPC40	YPR110C	SDH1	Q00711	640 aa		4.09	□□□□□ -1.75
RPC40	YPR110C	ENV7	Q12003	364 aa		4.09	□□□□□ -1.75
RPC40	YPR110C	OSW2	Q12202	724 aa		4.09	□□□□□ -1.75
RPC40	YPR110C	LPX1	Q12405	387 aa	Known RBP	4.09	□□□□□ -1.75
RPC40	YPR110C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
RPC40	YPR110C	AIM26	P32858	118 aa		4.08	□□□□□ -1.76
RPC40	YPR110C	YEL1	P34225	687 aa		4.08	□□□□□ -1.76
RPC40	YPR110C	MTC2	P34246	357 aa		4.08	□□□□□ -1.76
RPC40	YPR110C	OMA1	P36163	345 aa		4.08	□□□□□ -1.76
RPC40	YPR110C	UBP12	P39538	1254 aa		4.08	□□□□□ -1.76
RPC40	YPR110C	GYP8	P43570	497 aa		4.08	□□□□□ -1.76
RPC40	YPR110C	YNL193W	P53870	558 aa		4.08	□□□□□ -1.76
RPC40	YPR110C	SFB2	P53953	876 aa		4.08	□□□□□ -1.76
RPC40	YPR110C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
RPC40	YPR110C	TFB2	Q02939	513 aa		4.08	□□□□□ -1.76
RPC40	YPR110C	YLR001C	Q07895	862 aa		4.08	□□□□□ -1.76
RPC40	YPR110C	MED7	Q08278	222 aa		4.08	□□□□□ -1.76
RPC40	YPR110C	CYC7	P00045	113 aa		4.07	□□□□□ -1.76
RPC40	YPR110C	TRP3	P00937	484 aa		4.07	□□□□□ -1.76
RPC40	YPR110C	KIN2	P13186	1147 aa	Known RBP	4.07	□□□□□ -1.76
RPC40	YPR110C	SFP1	P32432	683 aa		4.07	□□□□□ -1.76
RPC40	YPR110C	GRX4	P32642	244 aa		4.07	□□□□□ -1.76
RPC40	YPR110C	ZDS1	P50111	915 aa	Known RBP	4.07	□□□□□ -1.76
RPC40	YPR110C	INP52	P50942	1183 aa		4.07	□□□□□ -1.76
RPC40	YPR110C	YNR029C	P53729	429 aa	Known RBP	4.07	□□□□□ -1.76
RPC40	YPR110C	MSC2	Q03455	724 aa		4.07	□□□□□ -1.76
RPC40	YPR110C	IOC4	Q04213	475 aa		4.07	□□□□□ -1.76
RPC40	YPR110C	XYL2	Q07993	356 aa		4.07	□□□□□ -1.76
RPC40	YPR110C	RIB2	Q12362	591 aa	Known RBP	4.07	□□□□□ -1.76
RPC40	YPR110C	ADR1	P07248	1323 aa		4.06	□□□□□ -1.76
RPC40	YPR110C	CDC9	P04819	755 aa		4.06	□□□□□ -1.76
RPC40	YPR110C	MPH2	P0CD99	609 aa		4.06	□□□□□ -1.76
RPC40	YPR110C	VBA3	P25594	458 aa		4.06	□□□□□ -1.76
RPC40	YPR110C	APL1	P27351	700 aa		4.06	□□□□□ -1.76
RPC40	YPR110C	YKR073C	P36153	106 aa		4.06	□□□□□ -1.76
RPC40	YPR110C	CRP1	P38845	465 aa	Known RBP	4.06	□□□□□ -1.76
RPC40	YPR110C	DSS1	P39112	969 aa		4.06	□□□□□ -1.76
RPC40	YPR110C	CAF16	P43569	289 aa		4.06	□□□□□ -1.76
RPC40	YPR110C	NIT3	P49954	291 aa		4.06	□□□□□ -1.76
RPC40	YPR110C	NOG2	P53742	486 aa	Known RBP	4.06	□□□□□ -1.76
RPC40	YPR110C	RSM24	Q03976	319 aa		4.06	□□□□□ -1.76
RPC40	YPR110C	COG8	Q04632	607 aa		4.06	□□□□□ -1.76
RPC40	YPR110C	SRD1	P09007	221 aa		4.05	□□□□□ -1.76
RPC40	YPR110C	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.05	□□□□□ -1.76	not detected
RPC40	YPR110C	STO1	P34160	861 aa	Known RBP	4.05	□□□□□ -1.76
RPC40	YPR110C	FOL2	P51601	243 aa	Known RBP	4.05	□□□□□ -1.76
RPC40	YPR110C	YDR514C	Q04408	483 aa		4.05	□□□□□ -1.76
RPC40	YPR110C	REH1	Q06709	432 aa		4.05	□□□□□ -1.76
RPC40	YPR110C	MET7	Q08645	548 aa		4.05	□□□□□ -1.76
RPC40	YPR110C	TSR4	P25040	408 aa		4.04	□□□□□ -1.76
RPC40	YPR110C	MGS1	P40151	587 aa		4.04	□□□□□ -1.76
RPC40	YPR110C	HXT16	P47185	567 aa		4.04	□□□□□ -1.76
RPC40	YPR110C	YPR196W	Q06595	470 aa		4.04	□□□□□ -1.76
RPC40	YPR110C	RSC3	Q06639	885 aa		4.04	□□□□□ -1.76
RPC40	YPR110C	CDA1	Q06702	301 aa		4.04	□□□□□ -1.76
RPC40	YPR110C	NOT3	P06102	836 aa	Known RBP	4.03	□□□□□ -1.76
RPC40	YPR110C	HSF1	P10961	833 aa		4.03	□□□□□ -1.76
RPC40	YPR110C	PCL2	P25693	308 aa		4.03	□□□□□ -1.76
RPC40	YPR110C	HSP78	P33416	811 aa		4.03	□□□□□ -1.76
RPC40	YPR110C	STE13	P33894	931 aa		4.03	□□□□□ -1.76
RPC40	YPR110C	MCD4	P36051	919 aa		4.03	□□□□□ -1.76
RPC40	YPR110C	TOS1	P38288	455 aa		4.03	□□□□□ -1.76
RPC40	YPR110C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.03	□□□□□ -1.76	not detected
RPC40	YPR110C	PMT3	P47190	753 aa		4.03	□□□□□ -1.76
RPC40	YPR110C	CTH1	P47976	325 aa		4.03	□□□□□ -1.76
RPC40	YPR110C	HDA1	P53973	706 aa		4.03	□□□□□ -1.76
RPC40	YPR110C	SNP1	Q00916	300 aa	Predicted RBP	4.03	□□□□□ -1.76
RPC40	YPR110C	FBP1	P09201	348 aa		4.02	□□□□□ -1.77
RPC40	YPR110C	SSB1	P11484	613 aa	Known RBP	4.02	□□□□□ -1.77
RPC40	YPR110C	RFA1	P22336	621 aa	Known RBP	4.02	□□□□□ -1.77
RPC40	YPR110C	URA1	P28272	314 aa	Predicted RBP	4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 40.4 ms