RNA–Protein interactions for RNA: YGR136W

LSB1, Transcript of Negative regulator of actin nucleation-promoting factor activity, yeast

Gene LSB1, Length 726 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LSB1	YGR136W	RTT10	Q08924	1013 aa		4.9	□□□□□ -1.63
LSB1	YGR136W	SWI1	P09547	1314 aa		4.9	□□□□□ -1.63
LSB1	YGR136W	UTP10	P42945	1769 aa	Known RBP	4.89	□□□□□ -1.63
LSB1	YGR136W	MCM5	P29496	775 aa	Known RBP	4.89	□□□□□ -1.63
LSB1	YGR136W	YIR014W	P40570	242 aa		4.89	□□□□□ -1.63
LSB1	YGR136W	YGR053C	P53234	283 aa		4.89	□□□□□ -1.63
LSB1	YGR136W	GRX6	Q12438	231 aa		4.89	□□□□□ -1.63
LSB1	YGR136W	YOR131C	Q12486	218 aa		4.89	□□□□□ -1.63
LSB1	YGR136W	SSK22	P25390	1331 aa	Predicted RBP	4.89	□□□□□ -1.63
LSB1	YGR136W	SUP35	P05453	685 aa	Known RBP	4.88	□□□□□ -1.63
LSB1	YGR136W	RPS9B	P05755	195 aa	Known RBP	4.88	□□□□□ -1.63
LSB1	YGR136W	MSB1	P21339	1137 aa	Known RBP	4.88	□□□□□ -1.63
LSB1	YGR136W	SWC3	P31376	625 aa		4.88	□□□□□ -1.63
LSB1	YGR136W	PYC2	P32327	1180 aa	Known RBP	4.88	□□□□□ -1.63
LSB1	YGR136W	GCD7	P32502	381 aa	Predicted RBP	4.88	□□□□□ -1.63
LSB1	YGR136W	RAD24	P32641	659 aa		4.88	□□□□□ -1.63
LSB1	YGR136W	YKL091C	P33324	310 aa	Known RBP	4.88	□□□□□ -1.63
LSB1	YGR136W	SHC1	P39000	512 aa		4.88	□□□□□ -1.63
LSB1	YGR136W	IOC3	P43596	787 aa		4.88	□□□□□ -1.63
LSB1	YGR136W	YJR008W	P47085	338 aa		4.88	□□□□□ -1.63
LSB1	YGR136W	UBP16	Q02863	499 aa		4.88	□□□□□ -1.63
LSB1	YGR136W	GDE1	Q02979	1223 aa		4.88	□□□□□ -1.63
LSB1	YGR136W	RAD50	P12753	1312 aa		4.88	□□□□□ -1.63
LSB1	YGR136W	PMD1	P32634	1753 aa		4.88	□□□□□ -1.63
LSB1	YGR136W	TOM1	Q03280	3268 aa		4.87	□□□□□ -1.63
LSB1	YGR136W	RET1	P22276	1149 aa	Known RBP	4.87	□□□□□ -1.63
LSB1	YGR136W	RAD27	P26793	382 aa		4.87	□□□□□ -1.63
LSB1	YGR136W	SQT1	P35184	431 aa		4.87	□□□□□ -1.63
LSB1	YGR136W	RNH70	P53331	553 aa		4.87	□□□□□ -1.63
LSB1	YGR136W	NOG1	Q02892	647 aa	Known RBP	4.87	□□□□□ -1.63
LSB1	YGR136W	NAN1	Q02931	896 aa	Known RBP	4.87	□□□□□ -1.63
LSB1	YGR136W	FAS2	P19097	1887 aa	Known RBP	4.87	□□□□□ -1.63
LSB1	YGR136W	FUS1	P11710	512 aa		4.86	□□□□□ -1.63
LSB1	YGR136W	SEC23	P15303	768 aa	Known RBP	4.86	□□□□□ -1.63
LSB1	YGR136W	MSM1	P22438	575 aa		4.86	□□□□□ -1.63
LSB1	YGR136W	DUT1	P33317	147 aa		4.86	□□□□□ -1.63
LSB1	YGR136W	RIM11	P38615	370 aa		4.86	□□□□□ -1.63
LSB1	YGR136W	UBP12	P39538	1254 aa		4.86	□□□□□ -1.63
LSB1	YGR136W	NKP2	Q06162	153 aa		4.86	□□□□□ -1.63
LSB1	YGR136W	CDC53	Q12018	815 aa	Known RBP	4.86	□□□□□ -1.63
LSB1	YGR136W	SNU66	Q12420	587 aa	Predicted RBP	4.86	□□□□□ -1.63
LSB1	YGR136W	CDC16	P09798	840 aa		4.85	□□□□□ -1.63
LSB1	YGR136W	YCR015C	P25616	317 aa		4.85	□□□□□ -1.63
LSB1	YGR136W	KRE2	P27809	442 aa		4.85	□□□□□ -1.63
LSB1	YGR136W	PPG1	P32838	368 aa		4.85	□□□□□ -1.63
LSB1	YGR136W	SEG2	P34250	1132 aa		4.85	□□□□□ -1.63
LSB1	YGR136W	RFC1	P38630	861 aa	Known RBP	4.85	□□□□□ -1.63
LSB1	YGR136W	PIC2	P40035	300 aa		4.85	□□□□□ -1.63
LSB1	YGR136W	NIT1	P40447	199 aa		4.85	□□□□□ -1.63
LSB1	YGR136W	RSM26	P47141	266 aa		4.85	□□□□□ -1.63
LSB1	YGR136W	FAA4	P47912	694 aa	Known RBP	4.85	□□□□□ -1.63
LSB1	YGR136W	MON1	P53129	644 aa		4.85	□□□□□ -1.63
LSB1	YGR136W	CWC22	P53333	577 aa	Known RBP	4.85	□□□□□ -1.63
LSB1	YGR136W	OPI10	Q08202	246 aa		4.85	□□□□□ -1.63
LSB1	YGR136W	NCB2	Q92317	146 aa		4.85	□□□□□ -1.63
LSB1	YGR136W	THS1	P04801	734 aa	Known RBP	4.84	□□□□□ -1.63
LSB1	YGR136W	CIT2	P08679	460 aa		4.84	□□□□□ -1.63
LSB1	YGR136W	ROX1	P25042	368 aa		4.84	□□□□□ -1.63
LSB1	YGR136W	MGM1	P32266	881 aa		4.84	□□□□□ -1.63
LSB1	YGR136W	TAT2	P38967	592 aa		4.84	□□□□□ -1.63
LSB1	YGR136W	SPF1	P39986	1215 aa	Known RBP	4.84	□□□□□ -1.63
LSB1	YGR136W	BUD6	P41697	788 aa		4.84	□□□□□ -1.63
LSB1	YGR136W	TDA5	Q06417	326 aa	Known RBP	4.84	□□□□□ -1.63
LSB1	YGR136W	THI3	Q07471	609 aa		4.84	□□□□□ -1.63
LSB1	YGR136W	CMR1	Q12510	522 aa	Known RBP	4.84	□□□□□ -1.63
LSB1	YGR136W	GCR1	P07261	785 aa		4.83	□□□□□ -1.64
LSB1	YGR136W	NPR1	P22211	790 aa		4.83	□□□□□ -1.64
LSB1	YGR136W	LRG1	P35688	1017 aa		4.83	□□□□□ -1.64
LSB1	YGR136W	SEA4	P38164	1038 aa		4.83	□□□□□ -1.64
LSB1	YGR136W	PEX28	P38848	579 aa		4.83	□□□□□ -1.64
LSB1	YGR136W	GSM1	P42950	618 aa		4.83	□□□□□ -1.64
LSB1	YGR136W	GNP1	P48813	663 aa		4.83	□□□□□ -1.64
LSB1	YGR136W	PPT1	P53043	513 aa		4.83	□□□□□ -1.64
LSB1	YGR136W	YGL081W	P53156	320 aa		4.83	□□□□□ -1.64
LSB1	YGR136W	RPT4	P53549	437 aa	Known RBP	4.83	□□□□□ -1.64
LSB1	YGR136W	FAR11	P53917	953 aa		4.83	□□□□□ -1.64
LSB1	YGR136W	SIW14	P53965	281 aa		4.83	□□□□□ -1.64
LSB1	YGR136W	UBX2	Q04228	584 aa		4.83	□□□□□ -1.64
LSB1	YGR136W	UTP14	Q04500	899 aa	Known RBP	4.83	□□□□□ -1.64
LSB1	YGR136W	PCT1	P13259	424 aa		4.82	□□□□□ -1.64
LSB1	YGR136W	VMA4	P22203	233 aa	Known RBP	4.82	□□□□□ -1.64
LSB1	YGR136W	AGP1	P25376	633 aa		4.82	□□□□□ -1.64
LSB1	YGR136W	AFG2	P32794	780 aa		4.82	□□□□□ -1.64
LSB1	YGR136W	UGA4	P32837	571 aa		4.82	□□□□□ -1.64
LSB1	YGR136W	DUR3	P33413	735 aa		4.82	□□□□□ -1.64
LSB1	YGR136W	PAN5	P38787	379 aa		4.82	□□□□□ -1.64
LSB1	YGR136W	SPL2	P38839	148 aa		4.82	□□□□□ -1.64
LSB1	YGR136W	NUG1	P40010	520 aa	Known RBP	4.82	□□□□□ -1.64
LSB1	YGR136W	LEM3	P42838	414 aa		4.82	□□□□□ -1.64
LSB1	YGR136W	ECL1	P48235	211 aa		4.82	□□□□□ -1.64
LSB1	YGR136W	YGL140C	P53120	1219 aa		4.82	□□□□□ -1.64
LSB1	YGR136W	GUP1	P53154	560 aa		4.82	□□□□□ -1.64
LSB1	YGR136W	NCE103	P53615	221 aa		4.82	□□□□□ -1.64
LSB1	YGR136W	ALG12	P53730	551 aa		4.82	□□□□□ -1.64
LSB1	YGR136W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.82	□□□□□ -1.64	not detected
LSB1	YGR136W	TRM44	Q02648	567 aa	Known RBP	4.82	□□□□□ -1.64
LSB1	YGR136W	SHE9	Q04172	456 aa		4.82	□□□□□ -1.64
LSB1	YGR136W	SPO20	Q04359	397 aa		4.82	□□□□□ -1.64
LSB1	YGR136W	MRL1	Q06815	381 aa		4.82	□□□□□ -1.64
LSB1	YGR136W	FAL1	Q12099	399 aa	Known RBP	4.82	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 29.1 ms