RNA–Protein interactions for RNA: YDR080W

VPS41, Transcript of Subunit of the HOPS endocytic tethering complex, yeastyeast

Gene VPS41, Length 2,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS41YDR080W RER2P35196 286 aa3.48□□□□□ -1.85
VPS41YDR080W POL12P38121 705 aaPredicted RBP3.48□□□□□ -1.85
VPS41YDR080W ADE16P54113 591 aaKnown RBP3.48□□□□□ -1.85
VPS41YDR080W YML133CQ03099 1374 aa3.47□□□□□ -1.85
VPS41YDR080W YLL067CQ07888 1374 aa3.47□□□□□ -1.85
VPS41YDR080W RPS24AP0CX31 135 aaKnown RBP3.47□□□□□ -1.85
VPS41YDR080W RPS24BP0CX32 135 aaKnown RBP3.47□□□□□ -1.85
VPS41YDR080W PFF1P38244 976 aa3.47□□□□□ -1.85
VPS41YDR080W TAF13P11747 167 aa3.47□□□□□ -1.85
VPS41YDR080W SPE2P21182 396 aa3.47□□□□□ -1.85
VPS41YDR080W THI80P35202 319 aa3.47□□□□□ -1.85
VPS41YDR080W ATG13Q06628 738 aa3.47□□□□□ -1.85
VPS41YDR080W MRL1Q06815 381 aa3.47□□□□□ -1.85
VPS41YDR080W YPL066WQ12194 479 aa3.47□□□□□ -1.85
VPS41YDR080W PTC5Q12511 572 aa3.47□□□□□ -1.85
VPS41YDR080W MPH1P40562 993 aa3.46□□□□□ -1.86
VPS41YDR080W GTS1P40956 396 aa3.46□□□□□ -1.86
VPS41YDR080W SPO21Q12411 609 aa3.46□□□□□ -1.86
VPS41YDR080W SEC3P33332 1336 aaKnown RBP3.46□□□□□ -1.86
VPS41YDR080W YLR278CQ05854 1341 aa3.46□□□□□ -1.86
VPS41YDR080W YER152CP10356 443 aa3.46□□□□□ -1.86
VPS41YDR080W ADP1P25371 1049 aa3.46□□□□□ -1.86
VPS41YDR080W LAP2Q10740 671 aa3.46□□□□□ -1.86
VPS41YDR080W YHL012WP38709 493 aa3.45□□□□□ -1.86
VPS41YDR080W SHC1P39000 512 aa3.45□□□□□ -1.86
VPS41YDR080W VPS53P47061 822 aa3.45□□□□□ -1.86
VPS41YDR080W TIF35Q04067 274 aaKnown RBP3.45□□□□□ -1.86
VPS41YDR080W DBP2P24783 546 aaKnown RBP3.45□□□□□ -1.86
VPS41YDR080W RIB2Q12362 591 aaKnown RBP3.45□□□□□ -1.86
VPS41YDR080W MDG1P53885 366 aa3.45□□□□□ -1.86
VPS41YDR080W ERO1Q03103 563 aa3.45□□□□□ -1.86
VPS41YDR080W ESF1Q06344 628 aaKnown RBP3.45□□□□□ -1.86
VPS41YDR080W AOS1Q06624 347 aa3.45□□□□□ -1.86
VPS41YDR080W RSC58Q07979 502 aa3.45□□□□□ -1.86
VPS41YDR080W MLP1Q02455 1875 aaKnown RBP3.44□□□□□ -1.86
VPS41YDR080W CDC34P14682 295 aa3.44□□□□□ -1.86
VPS41YDR080W SYP1P25623 870 aaKnown RBP3.44□□□□□ -1.86
VPS41YDR080W HKR1P41809 1802 aa3.44□□□□□ -1.86
VPS41YDR080W SRM1P21827 482 aa3.44□□□□□ -1.86
VPS41YDR080W MLS1P30952 554 aa3.44□□□□□ -1.86
VPS41YDR080W ENT3P47160 408 aa3.44□□□□□ -1.86
VPS41YDR080W ESC2Q06340 456 aa3.44□□□□□ -1.86
VPS41YDR080W DBP5P20449 482 aaKnown RBP3.43□□□□□ -1.86
VPS41YDR080W YGR053CP53234 283 aa3.43□□□□□ -1.86
VPS41YDR080W CTF4Q01454 927 aa3.43□□□□□ -1.86
VPS41YDR080W DIB1Q06819 143 aaPredicted RBP3.43□□□□□ -1.86
VPS41YDR080W HRK1Q08732 759 aaKnown RBP3.43□□□□□ -1.86
VPS41YDR080W RTT10Q08924 1013 aa3.43□□□□□ -1.86
VPS41YDR080W GRX6Q12438 231 aa3.43□□□□□ -1.86
VPS41YDR080W TRP2P00899 507 aaKnown RBP3.43□□□□□ -1.86
VPS41YDR080W SRO9P25567 434 aaKnown RBP3.43□□□□□ -1.86
VPS41YDR080W MDL2P33311 773 aa3.43□□□□□ -1.86
VPS41YDR080W HSE1P38753 452 aa3.43□□□□□ -1.86
VPS41YDR080W CNN1P43618 361 aa3.43□□□□□ -1.86
VPS41YDR080W ECL1P48235 211 aa3.43□□□□□ -1.86
VPS41YDR080W GRX4P32642 244 aa3.42□□□□□ -1.86
VPS41YDR080W HOS3Q02959 697 aaKnown RBP3.42□□□□□ -1.86
VPS41YDR080W RIX7Q07844 837 aaKnown RBP3.42□□□□□ -1.86
VPS41YDR080W OSM1P21375 501 aaKnown RBP3.42□□□□□ -1.86
VPS41YDR080W RMD1Q03441 430 aa3.42□□□□□ -1.86
VPS41YDR080W NAB6Q03735 1134 aaKnown RBP RIP-Chip data3.42□□□□□ -1.86not detected
VPS41YDR080W GAS1P22146 559 aaKnown RBP3.42□□□□□ -1.86
VPS41YDR080W ASF1P32447 279 aa3.42□□□□□ -1.86
VPS41YDR080W PEP7P32609 515 aa3.42□□□□□ -1.86
VPS41YDR080W RGD1P38339 666 aa3.42□□□□□ -1.86
VPS41YDR080W RPN3P40016 523 aaKnown RBP3.42□□□□□ -1.86
VPS41YDR080W MXR1P40029 184 aa3.42□□□□□ -1.86
VPS41YDR080W TAP42Q04372 366 aa3.42□□□□□ -1.86
VPS41YDR080W SIP5P40210 489 aaKnown RBP3.41□□□□□ -1.86
VPS41YDR080W YIL089WP40500 205 aa3.41□□□□□ -1.86
VPS41YDR080W YPL260WQ08977 551 aa3.41□□□□□ -1.86
VPS41YDR080W AIM26P32858 118 aa3.41□□□□□ -1.86
VPS41YDR080W FAA4P47912 694 aaKnown RBP3.41□□□□□ -1.86
VPS41YDR080W AUS1Q08409 1394 aa3.41□□□□□ -1.86
VPS41YDR080W RPL11AP0C0W9 174 aaKnown RBP3.4□□□□□ -1.86
VPS41YDR080W PUF4P25339 888 aaKnown RBP RIP-Chip data3.4□□□□□ -1.86not detected
VPS41YDR080W NIT1P40447 199 aa3.4□□□□□ -1.86
VPS41YDR080W NCS6P53088 359 aa3.4□□□□□ -1.86
VPS41YDR080W MRPL22P53881 309 aa3.4□□□□□ -1.86
VPS41YDR080W RPL11BQ3E757 174 aaPredicted RBP3.4□□□□□ -1.86
VPS41YDR080W PET112P33893 541 aa3.4□□□□□ -1.87
VPS41YDR080W IRC24P40580 263 aa3.4□□□□□ -1.87
VPS41YDR080W MTC3P53077 123 aa3.4□□□□□ -1.87
VPS41YDR080W PLB2Q03674 706 aa3.4□□□□□ -1.87
VPS41YDR080W SSK22P25390 1331 aaPredicted RBP3.4□□□□□ -1.87
VPS41YDR080W NUP145P49687 1317 aa3.4□□□□□ -1.87
VPS41YDR080W THS1P04801 734 aaKnown RBP3.39□□□□□ -1.87
VPS41YDR080W MOT2P34909 587 aaKnown RBP3.39□□□□□ -1.87
VPS41YDR080W TAF1P46677 1066 aa3.39□□□□□ -1.87
VPS41YDR080W YBP2P53169 641 aa3.39□□□□□ -1.87
VPS41YDR080W TIM50Q02776 476 aa3.39□□□□□ -1.87
VPS41YDR080W PMD1P32634 1753 aa3.39□□□□□ -1.87
VPS41YDR080W FAS2P19097 1887 aaKnown RBP3.39□□□□□ -1.87
VPS41YDR080W PRP6P19735 899 aaPredicted RBP3.39□□□□□ -1.87
VPS41YDR080W YKL151CP36059 337 aa3.39□□□□□ -1.87
VPS41YDR080W YKL069WP36088 180 aa3.39□□□□□ -1.87
VPS41YDR080W PIK1P39104 1066 aa3.39□□□□□ -1.87
VPS41YDR080W TYW3P53177 273 aa3.39□□□□□ -1.87
VPS41YDR080W VPS16Q03308 798 aa3.39□□□□□ -1.87
VPS41YDR080W NSI1Q12457 570 aa3.39□□□□□ -1.87
Retrieved 100 of 5,963 RNA–protein pairs in 110.5 ms