RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 GTF2F1P35269 517 aaKnown RBP eCLIP16.1■□□□□ 0.17
SKA3-202ENST00000314759 DNM1Q05193 864 aaKnown RBP16.1■□□□□ 0.17
SKA3-202ENST00000314759 UTP14CQ5TAP6 766 aaKnown RBP16.1■□□□□ 0.17
SKA3-202ENST00000314759 CCDC83Q8IWF9 413 aa16.1■□□□□ 0.17
SKA3-202ENST00000314759 GJB2P29033 226 aa16.1■□□□□ 0.17
SKA3-202ENST00000314759 SLC26A8Q96RN1 970 aa16.1■□□□□ 0.17
SKA3-202ENST00000314759 SPTLC3Q9NUV7 552 aa16.1■□□□□ 0.17
SKA3-202ENST00000314759 MTMR6Q9Y217 621 aa16.1■□□□□ 0.17
SKA3-202ENST00000314759 A0A0U1RQG5 324 aaPredicted RBP16.09■□□□□ 0.17
SKA3-202ENST00000314759 AP5Z1O43299 807 aa16.09■□□□□ 0.17
SKA3-202ENST00000314759 HOXC9P31274 260 aa16.09■□□□□ 0.17
SKA3-202ENST00000314759 ADCK5Q3MIX3 580 aa16.09■□□□□ 0.17
SKA3-202ENST00000314759 PTPRUQ92729 1446 aa16.09■□□□□ 0.17
SKA3-202ENST00000314759 EIF2S2P20042 333 aaKnown RBP16.09■□□□□ 0.17
SKA3-202ENST00000314759 PTH1RQ03431 593 aa16.09■□□□□ 0.17
SKA3-202ENST00000314759 BCL2L12Q9HB09 334 aa16.09■□□□□ 0.17
SKA3-202ENST00000314759 KIF3AQ9Y496 699 aa16.09■□□□□ 0.17
SKA3-202ENST00000314759 NLRP6P59044 892 aa16.08■□□□□ 0.17
SKA3-202ENST00000314759 PLCB2Q00722 1185 aa16.08■□□□□ 0.17
SKA3-202ENST00000314759 USP42Q9H9J4 1324 aaKnown RBP16.08■□□□□ 0.16
SKA3-202ENST00000314759 SPDYE4A6NLX3 237 aa16.08■□□□□ 0.16
SKA3-202ENST00000314759 BEND3Q5T5X7 828 aa16.08■□□□□ 0.16
SKA3-202ENST00000314759 JAKMIP1Q96N16 626 aaKnown RBP16.08■□□□□ 0.16
SKA3-202ENST00000314759 PDRG1Q9NUG6 133 aa16.08■□□□□ 0.16
SKA3-202ENST00000314759 NWD1Q149M9 1564 aa16.07■□□□□ 0.16
SKA3-202ENST00000314759 PI4KAP2A4QPH2 592 aa16.07■□□□□ 0.16
SKA3-202ENST00000314759 GLRX3O76003 335 aaKnown RBP16.07■□□□□ 0.16
SKA3-202ENST00000314759 ST3GAL1Q11201 340 aa16.07■□□□□ 0.16
SKA3-202ENST00000314759 VPS53Q5VIR6 699 aa16.07■□□□□ 0.16
SKA3-202ENST00000314759 NUTM2GQ5VZR2 741 aa16.07■□□□□ 0.16
SKA3-202ENST00000314759 PRPF40BQ6NWY9 871 aaKnown RBP16.07■□□□□ 0.16
SKA3-202ENST00000314759 PI4KAP1Q8N8J0 262 aa16.07■□□□□ 0.16
SKA3-202ENST00000314759 LTV1Q96GA3 475 aaPredicted RBP16.07■□□□□ 0.16
SKA3-202ENST00000314759 DIAPH3Q9NSV4 1193 aa16.07■□□□□ 0.16
SKA3-202ENST00000314759 TTC41PQ6P2S7 1318 aa16.06■□□□□ 0.16
SKA3-202ENST00000314759 UBR1Q8IWV7 1749 aa16.06■□□□□ 0.16
SKA3-202ENST00000314759 DNAAF4Q8WXU2 420 aa16.06■□□□□ 0.16
SKA3-202ENST00000314759 ZSWIM6Q9HCJ5 1215 aa16.06■□□□□ 0.16
SKA3-202ENST00000314759 CHPF2Q9P2E5 772 aa16.06■□□□□ 0.16
SKA3-202ENST00000314759 PLEKHG1Q9ULL1 1385 aa16.06■□□□□ 0.16
SKA3-202ENST00000314759 HSP90AB4PQ58FF6 505 aa16.06■□□□□ 0.16
SKA3-202ENST00000314759 KLHL34Q8N239 644 aa16.06■□□□□ 0.16
SKA3-202ENST00000314759 USHBP1Q8N6Y0 703 aa16.05■□□□□ 0.16
SKA3-202ENST00000314759 KCNF1Q9H3M0 494 aa16.05■□□□□ 0.16
SKA3-202ENST00000314759 PYCARDQ9ULZ3 195 aa16.05■□□□□ 0.16
SKA3-202ENST00000314759 AMOTL2Q9Y2J4 779 aa16.05■□□□□ 0.16
SKA3-202ENST00000314759 PIK3C2AO00443 1686 aa16.05■□□□□ 0.16
SKA3-202ENST00000314759 ME3Q16798 604 aa16.05■□□□□ 0.16
SKA3-202ENST00000314759 DDX54Q8TDD1 881 aaKnown RBP16.05■□□□□ 0.16
SKA3-202ENST00000314759 RUFY2Q8WXA3 655 aa16.05■□□□□ 0.16
SKA3-202ENST00000314759 KCNB2Q92953 911 aa16.05■□□□□ 0.16
SKA3-202ENST00000314759 ZSCAN31Q96LW9 406 aaPredicted RBP16.05■□□□□ 0.16
SKA3-202ENST00000314759 CYP46A1Q9Y6A2 500 aa16.05■□□□□ 0.16
SKA3-202ENST00000314759 CRYBG1Q9Y4K1 1723 aa16.05■□□□□ 0.16
SKA3-202ENST00000314759 EIF4A1P60842 406 aaKnown RBP16.05■□□□□ 0.16
SKA3-202ENST00000314759 OS9Q13438 667 aaPredicted RBP16.05■□□□□ 0.16
SKA3-202ENST00000314759 KIAA1524Q8TCG1 905 aa16.05■□□□□ 0.16
SKA3-202ENST00000314759 TM6SF1Q9BZW5 370 aa16.05■□□□□ 0.16
SKA3-202ENST00000314759 SH2B1Q9NRF2 756 aaPredicted RBP16.05■□□□□ 0.16
SKA3-202ENST00000314759 VPS37CA5D8V6 355 aaPredicted RBP16.04■□□□□ 0.16
SKA3-202ENST00000314759 NECAB1Q8N987 351 aa16.04■□□□□ 0.16
SKA3-202ENST00000314759 ANXA1P04083 346 aa16.04■□□□□ 0.16
SKA3-202ENST00000314759 NECTIN1Q15223 517 aa16.04■□□□□ 0.16
SKA3-202ENST00000314759 CLASRPQ8N2M8 674 aaKnown RBP16.04■□□□□ 0.16
SKA3-202ENST00000314759 RIOK3O14730 519 aaKnown RBP16.03■□□□□ 0.16
SKA3-202ENST00000314759 IGSF3O75054 1194 aa16.03■□□□□ 0.16
SKA3-202ENST00000314759 SPC24Q8NBT2 197 aa16.03■□□□□ 0.16
SKA3-202ENST00000314759 ECHDC1Q9NTX5 307 aa16.03■□□□□ 0.16
SKA3-202ENST00000314759 CEMIPQ8WUJ3 1361 aa16.03■□□□□ 0.16
SKA3-202ENST00000314759 CCDC192P0DO97 292 aa16.02■□□□□ 0.16
SKA3-202ENST00000314759 COL9A3Q14050 684 aaPredicted RBP16.02■□□□□ 0.16
SKA3-202ENST00000314759 PDCL2Q8N4E4 241 aa16.02■□□□□ 0.16
SKA3-202ENST00000314759 LGR6Q9HBX8 967 aa16.02■□□□□ 0.16
SKA3-202ENST00000314759 TPCN1Q9ULQ1 816 aa16.02■□□□□ 0.16
SKA3-202ENST00000314759 KCNQ3O43525 872 aa16.02■□□□□ 0.15
SKA3-202ENST00000314759 U2AF2P26368 475 aaKnown RBP eCLIP16.02■□□□□ 0.15
SKA3-202ENST00000314759 TTC6Q86TZ1 520 aa16.02■□□□□ 0.15
SKA3-202ENST00000314759 RGPD8O14715 1765 aaPredicted RBP16.02■□□□□ 0.15
SKA3-202ENST00000314759 MTX1Q13505 466 aa16.01■□□□□ 0.15
SKA3-202ENST00000314759 ADCY9O60503 1353 aa16.01■□□□□ 0.15
SKA3-202ENST00000314759 LARP1BQ659C4 914 aaKnown RBP16.01■□□□□ 0.15
SKA3-202ENST00000314759 PA2G4Q9UQ80 394 aaKnown RBP16.01■□□□□ 0.15
SKA3-202ENST00000314759 CCDC171Q6TFL3 1326 aa16.01■□□□□ 0.15
SKA3-202ENST00000314759 GTPBP4Q9BZE4 634 aaKnown RBP16.01■□□□□ 0.15
SKA3-202ENST00000314759 CHMP3Q9Y3E7 222 aa16.01■□□□□ 0.15
SKA3-202ENST00000314759 RBM8AQ9Y5S9 174 aaKnown RBP16.01■□□□□ 0.15
SKA3-202ENST00000314759 ZKSCAN1P17029 563 aaPredicted RBP16■□□□□ 0.15
SKA3-202ENST00000314759 FAM173BQ6P4H8 233 aa16■□□□□ 0.15
SKA3-202ENST00000314759 CDC37L1Q7L3B6 337 aa16■□□□□ 0.15
SKA3-202ENST00000314759 FERMT3Q86UX7 667 aa16■□□□□ 0.15
SKA3-202ENST00000314759 HOXB7P09629 217 aa16■□□□□ 0.15
SKA3-202ENST00000314759 LIG1P18858 919 aa16■□□□□ 0.15
SKA3-202ENST00000314759 CREB3L3Q68CJ9 461 aa16■□□□□ 0.15
SKA3-202ENST00000314759 EVI5LQ96CN4 794 aa16■□□□□ 0.15
SKA3-202ENST00000314759 TPM3P06753 285 aa15.99■□□□□ 0.15
SKA3-202ENST00000314759 IFIT2P09913 472 aaKnown RBP15.99■□□□□ 0.15
SKA3-202ENST00000314759 KRT85P78386 507 aa15.99■□□□□ 0.15
SKA3-202ENST00000314759 CAMK4Q16566 473 aa15.99■□□□□ 0.15
SKA3-202ENST00000314759 FAM200AQ8TCP9 573 aa15.99■□□□□ 0.15
SKA3-202ENST00000314759 FAM227BQ96M60 508 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms