RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 MT-ND2P03891 347 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 NR2F1P10589 423 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 ITIH1P19827 911 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 HNRNPA2B1P22626 353 aaKnown RBP15.43■□□□□ 0.06
COL4A1-204ENST00000543140 CXCR4P61073 352 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 BTN3A2P78410 334 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 KCNC4Q03721 635 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 BNIP3Q12983 259 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 DGCR6Q14129 220 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 ZNF605Q86T29 641 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 PSMA8Q8TAA3 256 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 APOBEC4Q8WW27 367 aaKnown RBP15.43■□□□□ 0.06
COL4A1-204ENST00000543140 DNASE1L2Q92874 299 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 ZNF556Q9HAH1 456 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 EHD3Q9NZN3 535 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 SEC14L3Q9UDX4 400 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 POFUT2Q9Y2G5 429 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 TDRD6O60522 2096 aaKnown RBP15.43■□□□□ 0.06
COL4A1-204ENST00000543140 SEMA7AO75326 666 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 CCNB2O95067 398 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 MASP1P48740 699 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 MRPS21P82921 87 aaKnown RBP15.43■□□□□ 0.06
COL4A1-204ENST00000543140 LASP1Q14847 261 aaKnown RBP15.43■□□□□ 0.06
COL4A1-204ENST00000543140 PRRT3Q5FWE3 981 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 TMEM107Q6UX40 140 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 DEF8Q6ZN54 512 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 AQP11Q8NBQ7 271 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 SMRP1Q8NCR6 262 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 OR10G6Q8NH81 332 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 RAB2BQ8WUD1 216 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 RORBQ92753 470 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 ZNF764Q96H86 408 aaPredicted RBP15.43■□□□□ 0.06
COL4A1-204ENST00000543140 GDF15Q99988 308 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 HCN4Q9Y3Q4 1203 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 TRBV4-1A0A0J9YWV2 114 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 TMEM247A6NEH6 219 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 E9PQ18 207 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 RGS10O43665 173 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 GASTP01350 101 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 MAGP20916 626 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 GGT2P36268 569 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 LIMS1P48059 325 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 ENTPD1P49961 510 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 MLC1Q15049 377 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 TMEM236Q5W0B7 351 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 MRM1Q6IN84 353 aaKnown RBP15.42■□□□□ 0.06
COL4A1-204ENST00000543140 VN1R4Q7Z5H5 301 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 P3H2Q8IVL5 708 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 OR4D11Q8NGI4 311 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 SUN3Q8TAQ9 357 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 PATE1Q8WXA2 126 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 ASB12Q8WXK4 309 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 FKBP10Q96AY3 582 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 MAPKAP1Q9BPZ7 522 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 SLC6A14Q9UN76 642 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 HOXC4P09017 264 aaPredicted RBP15.42■□□□□ 0.06
COL4A1-204ENST00000543140 GABRG2P18507 467 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 HMGA2P52926 109 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 SRP54P61011 504 aaKnown RBP15.42■□□□□ 0.06
COL4A1-204ENST00000543140 ALG11Q2TAA5 492 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 SLC16A12Q6ZSM3 486 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 COMTD1Q86VU5 262 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 PAQR7Q86WK9 346 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 LACC1Q8IV20 430 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 CCDC103Q8IW40 242 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 SFTPA2Q8IWL1 248 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 C16orf58Q96GQ5 468 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 ZNF607Q96SK3 696 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 NMNAT1Q9HAN9 279 aaPredicted RBP15.42■□□□□ 0.06
COL4A1-204ENST00000543140 P2RX2Q9UBL9 471 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 KLF15Q9UIH9 416 aa15.42■□□□□ 0.06
COL4A1-204ENST00000543140 TRIM64BA6NI03 449 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 APBB3O95704 486 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 HMGN2P05204 90 aaKnown RBP15.41■□□□□ 0.06
COL4A1-204ENST00000543140 ZNF888P0CJ79 500 aaPredicted RBP15.41■□□□□ 0.06
COL4A1-204ENST00000543140 POLR2CP19387 275 aaPredicted RBP15.41■□□□□ 0.06
COL4A1-204ENST00000543140 NUDT6P53370 316 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 DCTN2Q13561 401 aaKnown RBP15.41■□□□□ 0.06
COL4A1-204ENST00000543140 ZNF542PQ5EBM4 170 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 TCTN3Q6NUS6 607 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 Q6ZSR6 202 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 TRIM69Q86WT6 500 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 SLC44A3Q8N4M1 653 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 TANKQ92844 425 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 EQTNQ9NQ60 294 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 PSME2Q9UL46 239 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 GSAPA4D1B5 854 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 LRRC72A6NJI9 287 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 C2CD4DB7Z1M9 353 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 PROM1O43490 865 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 GUCY1B2O75343 617 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 PDE9AO76083 593 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 F3P13726 295 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 PSMB9P28065 219 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 POU1F1P28069 291 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 NDUFS1P28331 727 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 STXBP1P61764 594 aaKnown RBP15.41■□□□□ 0.06
COL4A1-204ENST00000543140 HPCAP84074 193 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 AQP6Q13520 282 aa15.41■□□□□ 0.06
COL4A1-204ENST00000543140 SPCS2Q15005 226 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 176.3 ms