RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 METTL27Q8N6F8 245 aaPredicted RBP12.12□□□□□ -0.47
USP53-209ENST00000514665 MFSD2AQ8NA29 543 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 SUN5Q8TC36 379 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 NT5C3BQ969T7 300 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 SLC39A13Q96H72 371 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 PCDHGB1Q9Y5G3 927 aa12.12□□□□□ -0.47
USP53-209ENST00000514665 NUP214P35658 2090 aaPredicted RBP12.12□□□□□ -0.47
USP53-209ENST00000514665 A0A1W2PQU0 124 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 ATE1O95260 518 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 MT-ND5P03915 603 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 HOXD9P28356 352 aaPredicted RBP12.11□□□□□ -0.47
USP53-209ENST00000514665 GPR4P46093 362 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 CD97P48960 835 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 CLCN2P51788 898 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 HK3P52790 923 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 RPS26P11Q5JNZ5 115 aaPredicted RBP12.11□□□□□ -0.47
USP53-209ENST00000514665 PRSS48Q7RTY5 328 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 SLITRK4Q8IW52 837 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 NEIL2Q969S2 332 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 CEPT1Q9Y6K0 416 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 TRPM3Q9HCF6 1732 aaPredicted RBP12.11□□□□□ -0.47
USP53-209ENST00000514665 A8MU76 341 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 F8A1P23610 371 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 NAA10P41227 235 aaPredicted RBP12.11□□□□□ -0.47
USP53-209ENST00000514665 MAZP56270 477 aaKnown RBP12.11□□□□□ -0.47
USP53-209ENST00000514665 GABARAPL2P60520 117 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 SIM1P81133 766 aaPredicted RBP12.11□□□□□ -0.47
USP53-209ENST00000514665 SCRN3Q0VDG4 424 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 SMN1Q16637 294 aaKnown RBP12.11□□□□□ -0.47
USP53-209ENST00000514665 NRSN1Q8IZ57 195 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 OR5M3Q8NGP4 307 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.11□□□□□ -0.47
USP53-209ENST00000514665 LRRC20Q8TCA0 184 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 ZNF296Q8WUU4 475 aaPredicted RBP12.11□□□□□ -0.47
USP53-209ENST00000514665 FATE1Q969F0 183 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 CIDECQ96AQ7 238 aaPredicted RBP12.11□□□□□ -0.47
USP53-209ENST00000514665 DPAGT1Q9H3H5 408 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 SMURF1Q9HCE7 757 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 FZD3Q9NPG1 666 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 LYARQ9NX58 379 aaKnown RBP12.11□□□□□ -0.47
USP53-209ENST00000514665 ARID1AO14497 2285 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 UBFD1O14562 309 aaKnown RBP12.11□□□□□ -0.47
USP53-209ENST00000514665 RPS3P23396 243 aaKnown RBP eCLIP12.11□□□□□ -0.47
USP53-209ENST00000514665 GABRA3P34903 492 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 ACVR1BP36896 505 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 PPP5CP53041 499 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 NADSYN1Q6IA69 706 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 PAMR1Q6UXH9 720 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 JAGN1Q8N5M9 183 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 OR5AR1Q8NGP9 310 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 BBS10Q8TAM1 723 aa12.11□□□□□ -0.47
USP53-209ENST00000514665 M0R3H8 397 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 CTSCP53634 463 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 RPL6Q02878 288 aaKnown RBP12.1□□□□□ -0.47
USP53-209ENST00000514665 C1orf61Q13536 156 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 CAMK1Q14012 370 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 SMCO1Q147U7 214 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 GRIN2CQ14957 1233 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 FIGNL1Q6PIW4 674 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 HSD11B1LQ7Z5J1 315 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 KLBQ86Z14 1044 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 ARMC10Q8N2F6 343 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 OR2T33Q8NG76 320 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 GNPDA2Q8TDQ7 276 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 ECHDC3Q96DC8 303 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 SORBS1Q9BX66 1292 aaKnown RBP12.1□□□□□ -0.47
USP53-209ENST00000514665 HEBP1Q9NRV9 189 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 EXOSC1Q9Y3B2 195 aaKnown RBP12.1□□□□□ -0.47
USP53-209ENST00000514665 CD8B2A6NJW9 211 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 CLCA1A8K7I4 914 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 ARNTLO00327 626 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 TSPAN4O14817 238 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 LATS1O95835 1130 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 FHP07954 510 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 CD8BP10966 210 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 CCKBRP32239 447 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 VSX2P58304 361 aaPredicted RBP12.1□□□□□ -0.47
USP53-209ENST00000514665 FLYWCH1Q4VC44 716 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 ZNF542PQ5EBM4 170 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 ANKRD13BQ86YJ7 626 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 TEX26Q8N6G2 289 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 OR52P1PQ8NH57 321 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 CEP76Q8TAP6 659 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 NDNFQ8TB73 568 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 ERMAPQ96PL5 475 aaPredicted RBP12.1□□□□□ -0.47
USP53-209ENST00000514665 IRF2BPLQ9H1B7 796 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 GPN3Q9UHW5 284 aaPredicted RBP12.1□□□□□ -0.47
USP53-209ENST00000514665 LOC100509620A0A075B734 347 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 A0A1W2PRG6 482 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 FRS3O43559 492 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 VEGFDO43915 354 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 KAT7O95251 611 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 GSTT2BP0CG30 244 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 SEMA3BQ13214 749 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 PROX2Q3B8N5 592 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 CTSL3PQ5NE16 218 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 DUS1LQ6P1R4 473 aaKnown RBP12.1□□□□□ -0.47
USP53-209ENST00000514665 TMED4Q7Z7H5 227 aa12.1□□□□□ -0.47
USP53-209ENST00000514665 MEX3DQ86XN8 651 aaKnown RBP12.1□□□□□ -0.47
USP53-209ENST00000514665 NRROSQ86YC3 692 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms