RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 DCAF8L2P0C7V8 631 aa22.14■■□□□ 1.13
USP53-209ENST00000514665 NISCHQ9Y2I1 1504 aa21.78■■□□□ 1.08
USP53-209ENST00000514665 SUPT5HO00267 1087 aaKnown RBP21.42■■□□□ 1.02
USP53-209ENST00000514665 SHROOM4Q9ULL8 1493 aa21.12■□□□□ 0.97
USP53-209ENST00000514665 EHMT2Q96KQ7 1210 aa20.62■□□□□ 0.89
USP53-209ENST00000514665 PCGF6Q9BYE7 350 aa20.17■□□□□ 0.82
USP53-209ENST00000514665 FAM9AQ8IZU1 332 aaPredicted RBP20.17■□□□□ 0.82
USP53-209ENST00000514665 TTBK1Q5TCY1 1321 aaPredicted RBP19.92■□□□□ 0.78
USP53-209ENST00000514665 APLP2Q06481 763 aa19.76■□□□□ 0.75
USP53-209ENST00000514665 TRIM41Q8WV44 630 aa19.72■□□□□ 0.75
USP53-209ENST00000514665 RANGAP1P46060 587 aaPredicted RBP19.58■□□□□ 0.73
USP53-209ENST00000514665 CCER1Q8TC90 406 aaPredicted RBP19.5■□□□□ 0.71
USP53-209ENST00000514665 PELP1Q8IZL8 1130 aaKnown RBP19.45■□□□□ 0.7
USP53-209ENST00000514665 PPARGC1BQ86YN6 1023 aaKnown RBP19.44■□□□□ 0.7
USP53-209ENST00000514665 ZEB1P37275 1124 aaPredicted RBP19.43■□□□□ 0.7
USP53-209ENST00000514665 UBTFP17480 764 aaKnown RBP19.36■□□□□ 0.69
USP53-209ENST00000514665 LOC105371045A0A1W2PR82 267 aa19.35■□□□□ 0.69
USP53-209ENST00000514665 CHIC1Q5VXU3 224 aa19.33■□□□□ 0.69
USP53-209ENST00000514665 CENPBP07199 599 aaPredicted RBP19.29■□□□□ 0.68
USP53-209ENST00000514665 HRCP23327 699 aa19.26■□□□□ 0.67
USP53-209ENST00000514665 TRIM26Q12899 539 aaPredicted RBP19.22■□□□□ 0.67
USP53-209ENST00000514665 ATP1B4Q9UN42 357 aaPredicted RBP19.18■□□□□ 0.66
USP53-209ENST00000514665 YTHDC1Q96MU7 727 aaKnown RBP19.13■□□□□ 0.65
USP53-209ENST00000514665 HNRNPUL2Q1KMD3 747 aaKnown RBP18.82■□□□□ 0.6
USP53-209ENST00000514665 ITGAEP38570 1179 aa18.82■□□□□ 0.6
USP53-209ENST00000514665 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.78■□□□□ 0.6
USP53-209ENST00000514665 ERICH6Q7L0X2 663 aa18.73■□□□□ 0.59
USP53-209ENST00000514665 NEFLP07196 543 aa18.7■□□□□ 0.58
USP53-209ENST00000514665 DIEXFQ68CQ4 756 aaKnown RBP18.54■□□□□ 0.56
USP53-209ENST00000514665 ABCC9O60706 1549 aa18.47■□□□□ 0.55
USP53-209ENST00000514665 PABPN1Q86U42 306 aaKnown RBP eCLIP18.47■□□□□ 0.55
USP53-209ENST00000514665 CNGB1Q14028 1251 aaPredicted RBP18.42■□□□□ 0.54
USP53-209ENST00000514665 POLR3GLQ9BT43 218 aa18.42■□□□□ 0.54
USP53-209ENST00000514665 MYT1Q01538 1121 aa18.3■□□□□ 0.52
USP53-209ENST00000514665 FAM50AQ14320 339 aaKnown RBP18.26■□□□□ 0.51
USP53-209ENST00000514665 GTF3C3Q9Y5Q9 886 aa18.25■□□□□ 0.51
USP53-209ENST00000514665 NEUROD1Q13562 356 aa18.19■□□□□ 0.5
USP53-209ENST00000514665 CSRNP3Q8WYN3 585 aa18.14■□□□□ 0.49
USP53-209ENST00000514665 MYT1LQ9UL68 1186 aa18.13■□□□□ 0.49
USP53-209ENST00000514665 ZNF316A6NFI3 1004 aaPredicted RBP18.11■□□□□ 0.49
USP53-209ENST00000514665 BCANQ96GW7 911 aa18.08■□□□□ 0.49
USP53-209ENST00000514665 ZCCHC6Q5VYS8 1495 aaKnown RBP18.06■□□□□ 0.48
USP53-209ENST00000514665 TRIM52Q96A61 297 aa18.05■□□□□ 0.48
USP53-209ENST00000514665 ACIN1Q9UKV3 1341 aaKnown RBP18.02■□□□□ 0.47
USP53-209ENST00000514665 P3H3Q8IVL6 736 aa17.99■□□□□ 0.47
USP53-209ENST00000514665 DCAF1Q9Y4B6 1507 aa17.95■□□□□ 0.46
USP53-209ENST00000514665 DAXXQ9UER7 740 aaPredicted RBP17.94■□□□□ 0.46
USP53-209ENST00000514665 MYO15BQ96JP2 1530 aa17.92■□□□□ 0.46
USP53-209ENST00000514665 SCRIBQ14160 1630 aa17.9■□□□□ 0.46
USP53-209ENST00000514665 ANP32CO43423 234 aa17.9■□□□□ 0.46
USP53-209ENST00000514665 ZNF326Q5BKZ1 582 aaKnown RBP17.9■□□□□ 0.46
USP53-209ENST00000514665 ARID3CA6NKF2 412 aa17.86■□□□□ 0.45
USP53-209ENST00000514665 SLC4A1APQ9BWU0 796 aaKnown RBP17.84■□□□□ 0.45
USP53-209ENST00000514665 FBLN2P98095 1184 aa17.76■□□□□ 0.43
USP53-209ENST00000514665 CLSPNQ9HAW4 1339 aa17.72■□□□□ 0.43
USP53-209ENST00000514665 RTL5Q5HYW3 569 aaPredicted RBP17.7■□□□□ 0.42
USP53-209ENST00000514665 CDK11AQ9UQ88 783 aaPredicted RBP17.67■□□□□ 0.42
USP53-209ENST00000514665 SCAF1Q9H7N4 1312 aaKnown RBP17.66■□□□□ 0.42
USP53-209ENST00000514665 DDX10Q13206 875 aaKnown RBP17.66■□□□□ 0.42
USP53-209ENST00000514665 RSF1Q96T23 1441 aaPredicted RBP17.62■□□□□ 0.41
USP53-209ENST00000514665 MIER1Q8N108 512 aa17.61■□□□□ 0.41
USP53-209ENST00000514665 ZNF777Q9ULD5 760 aaPredicted RBP17.6■□□□□ 0.41
USP53-209ENST00000514665 FKBP8Q14318 412 aa17.59■□□□□ 0.41
USP53-209ENST00000514665 TONSLQ96HA7 1378 aa17.54■□□□□ 0.4
USP53-209ENST00000514665 CCDC180Q9P1Z9 1646 aa17.54■□□□□ 0.4
USP53-209ENST00000514665 HIRIP3Q9BW71 556 aaPredicted RBP17.52■□□□□ 0.4
USP53-209ENST00000514665 HNRNPUQ00839 825 aaKnown RBP eCLIP17.52■□□□□ 0.39
USP53-209ENST00000514665 CHIC2Q9UKJ5 165 aa17.5■□□□□ 0.39
USP53-209ENST00000514665 CLIP1P30622 1438 aa17.5■□□□□ 0.39
USP53-209ENST00000514665 FAM9BQ8IZU0 186 aa17.46■□□□□ 0.39
USP53-209ENST00000514665 CEP162Q5TB80 1403 aa17.45■□□□□ 0.38
USP53-209ENST00000514665 SALL2Q9Y467 1007 aaPredicted RBP17.38■□□□□ 0.37
USP53-209ENST00000514665 BCL11AQ9H165 835 aa17.38■□□□□ 0.37
USP53-209ENST00000514665 NPM2Q86SE8 214 aaKnown RBP17.37■□□□□ 0.37
USP53-209ENST00000514665 CANXP27824 592 aaKnown RBP17.33■□□□□ 0.37
USP53-209ENST00000514665 IRX6P78412 446 aaPredicted RBP17.32■□□□□ 0.36
USP53-209ENST00000514665 ANP32AP39687 249 aaKnown RBP17.31■□□□□ 0.36
USP53-209ENST00000514665 MTUS2Q5JR59 1369 aa17.31■□□□□ 0.36
USP53-209ENST00000514665 GOLGA3Q08378 1498 aa17.3■□□□□ 0.36
USP53-209ENST00000514665 WRNQ14191 1432 aaPredicted RBP eCLIP17.29■□□□□ 0.36
USP53-209ENST00000514665 MRS2Q9HD23 443 aa17.28■□□□□ 0.36
USP53-209ENST00000514665 CECR2Q9BXF3 1484 aa17.27■□□□□ 0.36
USP53-209ENST00000514665 RRP7BPQ9NSQ0 103 aa17.27■□□□□ 0.36
USP53-209ENST00000514665 EEA1Q15075 1411 aa17.27■□□□□ 0.36
USP53-209ENST00000514665 TNIKQ9UKE5 1360 aa17.27■□□□□ 0.35
USP53-209ENST00000514665 KDM2AQ9Y2K7 1162 aa17.25■□□□□ 0.35
USP53-209ENST00000514665 TMC1Q8TDI8 760 aa17.24■□□□□ 0.35
USP53-209ENST00000514665 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.23■□□□□ 0.35
USP53-209ENST00000514665 CHGAP10645 457 aaKnown RBP17.2■□□□□ 0.34
USP53-209ENST00000514665 SENP3-EIF4A1A0A087X0R7 540 aa17.2■□□□□ 0.34
USP53-209ENST00000514665 CCDC136Q96JN2 1154 aa17.2■□□□□ 0.34
USP53-209ENST00000514665 ZBTB47Q9UFB7 747 aaPredicted RBP17.19■□□□□ 0.34
USP53-209ENST00000514665 SIN3AQ96ST3 1273 aa17.17■□□□□ 0.34
USP53-209ENST00000514665 EIF4G2P78344 907 aaKnown RBP eCLIP17.17■□□□□ 0.34
USP53-209ENST00000514665 SOGA1O94964 1423 aa17.16■□□□□ 0.34
USP53-209ENST00000514665 SLC24A1O60721 1099 aa17.15■□□□□ 0.34
USP53-209ENST00000514665 TSPY4P0CV99 314 aa17.15■□□□□ 0.34
USP53-209ENST00000514665 TSPY10P0CW01 314 aa17.15■□□□□ 0.34
USP53-209ENST00000514665 RB1CC1Q8TDY2 1594 aa17.14■□□□□ 0.34
USP53-209ENST00000514665 CEP164Q9UPV0 1460 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms