RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 GMNNO75496 209 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 VNN2O95498 520 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 IGHV2-70P01814 119 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 SMIM18P0DKX4 95 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 PTGER4P35408 488 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 CDX1P47902 265 aaPredicted RBP5.4□□□□□ -1.54
VPS53-219ENST00000576019 FMO5P49326 533 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 DSC1Q08554 894 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 IFT88Q13099 833 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 TMED1Q13445 227 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 DDX39BQ13838 428 aaKnown RBP5.4□□□□□ -1.54
VPS53-219ENST00000576019 GK2Q14410 553 aaPredicted RBP5.4□□□□□ -1.54
VPS53-219ENST00000576019 MXD4Q14582 209 aaPredicted RBP5.4□□□□□ -1.54
VPS53-219ENST00000576019 DECR1Q16698 335 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 GCNT6Q5T4J0 391 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 ZNF852Q6ZMS4 543 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 SHFQ7M4L6 423 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 CROCCP3Q8IVE0 287 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 FOXRED2Q8IWF2 684 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 LAX1Q8IWV1 398 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 SLC5A8Q8N695 610 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 GCSAMQ8N6F7 178 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 RNF148Q8N7C7 305 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 CCDC63Q8NA47 563 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 LEMD2Q8NC56 503 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 ACVR1CQ8NER5 493 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 OR13C2Q8NGS9 318 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 FCGR1BQ92637 280 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 TAAR8Q969N4 342 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 PYCR2Q96C36 320 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 WWC2-AS2Q96NR7 200 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 SPAG8Q99932 426 aaPredicted RBP5.4□□□□□ -1.54
VPS53-219ENST00000576019 FARSBQ9NSD9 589 aaKnown RBP5.4□□□□□ -1.54
VPS53-219ENST00000576019 PANK4Q9NVE7 773 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 CNOT2Q9NZN8 540 aaKnown RBP5.4□□□□□ -1.54
VPS53-219ENST00000576019 NPAP1Q9NZP6 1156 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 CHRNA9Q9UGM1 479 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 IL20RAQ9UHF4 553 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 KCNJ14Q9UNX9 436 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 ZNF510Q9Y2H8 683 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 SH3GLB1Q9Y371 365 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 LAMA4Q16363 1823 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 MYO16Q9Y6X6 1858 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 ADAMTS9Q9P2N4 1935 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 CSPG4Q6UVK1 2322 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 XKRY2A2RUG3 117 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.39□□□□□ -1.55
VPS53-219ENST00000576019 KCNN4O15554 427 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 PSMD3O43242 534 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 NUAK1O60285 661 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 ZNF821O75541 412 aaPredicted RBP5.39□□□□□ -1.55
VPS53-219ENST00000576019 NUDT17P0C025 328 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 MYZAPP0CAP1 466 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 DLATP10515 647 aaKnown RBP5.39□□□□□ -1.55
VPS53-219ENST00000576019 UGT1A1P22309 533 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 PTPN4P29074 926 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 CLDN20P56880 219 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 IRX4P78413 519 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 SPIBQ01892 262 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 GABPB1Q06547 395 aaPredicted RBP5.39□□□□□ -1.55
VPS53-219ENST00000576019 ABRQ12979 859 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 ZMYND11Q15326 602 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 NPTX1Q15818 432 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 CARTPTQ16568 116 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 CERKLQ49MI3 558 aaPredicted RBP5.39□□□□□ -1.55
VPS53-219ENST00000576019 MIDNQ504T8 468 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 TPGS2Q68CL5 300 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 C18orf63Q68DL7 685 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 FAM166AQ6J272 317 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 C16orf87Q6PH81 154 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 KCTD18Q6PI47 426 aaPredicted RBP5.39□□□□□ -1.55
VPS53-219ENST00000576019 KCNV1Q6PIU1 500 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 FBXO16Q8IX29 292 aaPredicted RBP5.39□□□□□ -1.55
VPS53-219ENST00000576019 SPEM1Q8N4L4 309 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 EIF1ADQ8N9N8 165 aaKnown RBP5.39□□□□□ -1.55
VPS53-219ENST00000576019 OR10T2Q8NGX3 314 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 OSR1Q8TAX0 266 aaPredicted RBP5.39□□□□□ -1.55
VPS53-219ENST00000576019 ZNF398Q8TD17 642 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 GANCQ8TET4 914 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 SLC44A1Q8WWI5 657 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 SMPDL3BQ92485 455 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 MTERF3Q96E29 417 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 MAGED4Q96JG8 741 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 TAAR6Q96RI8 345 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 C17orf62Q9BQA9 187 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 PIGQQ9BRB3 760 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 RPP25Q9BUL9 199 aaKnown RBP5.39□□□□□ -1.55
VPS53-219ENST00000576019 GCOM2Q9BZD3 368 aaPredicted RBP5.39□□□□□ -1.55
VPS53-219ENST00000576019 ATG10Q9H0Y0 220 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 KLHL31Q9H511 634 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 LRRC40Q9H9A6 602 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 STARD5Q9NSY2 213 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 TMEM51Q9NW97 253 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 PARPBPQ9NWS1 579 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 TINAGQ9UJW2 476 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 FBXL2Q9UKC9 423 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 RUVBL2Q9Y230 463 aaKnown RBP5.39□□□□□ -1.55
VPS53-219ENST00000576019 TSC22D4Q9Y3Q8 395 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 JRKLQ9Y4A0 524 aa5.39□□□□□ -1.55
VPS53-219ENST00000576019 RNF114Q9Y508 228 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms