RNA–Protein interactions for RNA: YMR067C

UBX4, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX4, Length 1,251 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX4	YMR067C	APL1	P27351	700 aa		4.68	□□□□□ -1.66
UBX4	YMR067C	SPT20	P50875	604 aa		4.68	□□□□□ -1.66
UBX4	YMR067C	DUS4	Q06063	367 aa		4.68	□□□□□ -1.66
UBX4	YMR067C	YLL058W	Q12198	575 aa		4.68	□□□□□ -1.66
UBX4	YMR067C	BI4	P03879	638 aa		4.67	□□□□□ -1.66
UBX4	YMR067C	CMP2	P14747	604 aa		4.67	□□□□□ -1.66
UBX4	YMR067C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.67	□□□□□ -1.66	not detected
UBX4	YMR067C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.67	□□□□□ -1.66	not detected
UBX4	YMR067C	MSC2	Q03455	724 aa		4.67	□□□□□ -1.66
UBX4	YMR067C	PIN2	Q12057	282 aa		4.67	□□□□□ -1.66
UBX4	YMR067C	YPL066W	Q12194	479 aa		4.67	□□□□□ -1.66
UBX4	YMR067C	SRM1	P21827	482 aa		4.66	□□□□□ -1.66
UBX4	YMR067C	DBP2	P24783	546 aa	Known RBP	4.66	□□□□□ -1.66
UBX4	YMR067C	MOT2	P34909	587 aa	Known RBP	4.66	□□□□□ -1.66
UBX4	YMR067C	YGL176C	P46945	554 aa		4.66	□□□□□ -1.66
UBX4	YMR067C	PLB2	Q03674	706 aa		4.66	□□□□□ -1.66
UBX4	YMR067C	ROT1	Q03691	256 aa		4.66	□□□□□ -1.66
UBX4	YMR067C	RXT3	Q07458	294 aa		4.66	□□□□□ -1.66
UBX4	YMR067C	RPP2A	P05319	106 aa	Known RBP	4.65	□□□□□ -1.67
UBX4	YMR067C	STE11	P23561	717 aa		4.65	□□□□□ -1.67
UBX4	YMR067C	TAT2	P38967	592 aa		4.65	□□□□□ -1.67
UBX4	YMR067C	SIP5	P40210	489 aa	Known RBP	4.65	□□□□□ -1.67
UBX4	YMR067C	FAA4	P47912	694 aa	Known RBP	4.65	□□□□□ -1.67
UBX4	YMR067C	VPS16	Q03308	798 aa		4.65	□□□□□ -1.67
UBX4	YMR067C	ACK1	Q07622	623 aa	Predicted RBP	4.65	□□□□□ -1.67
UBX4	YMR067C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.65	□□□□□ -1.67	not detected
UBX4	YMR067C	GPB1	Q08886	897 aa		4.65	□□□□□ -1.67
UBX4	YMR067C	CDC6	P09119	513 aa		4.64	□□□□□ -1.67
UBX4	YMR067C	AGP1	P25376	633 aa		4.64	□□□□□ -1.67
UBX4	YMR067C	CTS1	P29029	562 aa		4.64	□□□□□ -1.67
UBX4	YMR067C	MAD1	P40957	749 aa		4.64	□□□□□ -1.67
UBX4	YMR067C	SNU71	P53207	620 aa	Known RBP	4.64	□□□□□ -1.67
UBX4	YMR067C	VPS62	P53285	467 aa		4.64	□□□□□ -1.67
UBX4	YMR067C	GDE1	Q02979	1223 aa		4.64	□□□□□ -1.67
UBX4	YMR067C	GSF2	Q04697	403 aa	Known RBP	4.64	□□□□□ -1.67
UBX4	YMR067C	CDC20	P26309	610 aa		4.63	□□□□□ -1.67
UBX4	YMR067C	SBA1	P28707	216 aa	Known RBP	4.63	□□□□□ -1.67
UBX4	YMR067C	HFM1	P51979	1187 aa		4.63	□□□□□ -1.67
UBX4	YMR067C	YLR225C	Q05948	407 aa	Known RBP	4.63	□□□□□ -1.67
UBX4	YMR067C	NOP12	Q08208	459 aa	Known RBP	4.63	□□□□□ -1.67
UBX4	YMR067C	MTC3	P53077	123 aa		4.62	□□□□□ -1.67
UBX4	YMR067C	HMI1	Q12039	706 aa		4.62	□□□□□ -1.67
UBX4	YMR067C	FAL1	Q12099	399 aa	Known RBP	4.62	□□□□□ -1.67
UBX4	YMR067C	FUN30	P31380	1131 aa		4.61	□□□□□ -1.67
UBX4	YMR067C	SHM2	P37291	469 aa	Known RBP	4.61	□□□□□ -1.67
UBX4	YMR067C	YAP1801	P38856	637 aa		4.61	□□□□□ -1.67
UBX4	YMR067C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
UBX4	YMR067C	MND2	P40577	368 aa		4.61	□□□□□ -1.67
UBX4	YMR067C	URN1	Q06525	465 aa	Known RBP	4.61	□□□□□ -1.67
UBX4	YMR067C	MDM38	Q08179	573 aa		4.61	□□□□□ -1.67
UBX4	YMR067C	OSW2	Q12202	724 aa		4.61	□□□□□ -1.67
UBX4	YMR067C	RPC82	P32349	654 aa		4.6	□□□□□ -1.67
UBX4	YMR067C	ABD1	P32783	436 aa	Predicted RBP	4.6	□□□□□ -1.67
UBX4	YMR067C	CWC24	P53769	259 aa		4.6	□□□□□ -1.67
UBX4	YMR067C	YAP6	Q03935	383 aa		4.6	□□□□□ -1.67
UBX4	YMR067C	SHE9	Q04172	456 aa		4.6	□□□□□ -1.67
UBX4	YMR067C	HRQ1	Q05549	1077 aa		4.6	□□□□□ -1.67
UBX4	YMR067C	JIP5	Q06214	492 aa	Predicted RBP	4.6	□□□□□ -1.67
UBX4	YMR067C	ZRG8	P40021	1076 aa		4.59	□□□□□ -1.67
UBX4	YMR067C	MNN10	P50108	393 aa	Known RBP	4.59	□□□□□ -1.67
UBX4	YMR067C	SRP1	Q02821	542 aa	Known RBP	4.59	□□□□□ -1.67
UBX4	YMR067C	SRT1	Q03175	343 aa		4.59	□□□□□ -1.67
UBX4	YMR067C	ESC2	Q06340	456 aa		4.59	□□□□□ -1.67
UBX4	YMR067C	ADY3	Q07732	790 aa		4.59	□□□□□ -1.67
UBX4	YMR067C	EMC1	P25574	760 aa		4.58	□□□□□ -1.68
UBX4	YMR067C	LST4	P34239	828 aa		4.58	□□□□□ -1.68
UBX4	YMR067C	YKL151C	P36059	337 aa		4.58	□□□□□ -1.68
UBX4	YMR067C	POA1	P38218	177 aa		4.58	□□□□□ -1.68
UBX4	YMR067C	MET12	P46151	657 aa		4.58	□□□□□ -1.68
UBX4	YMR067C	GTF1	P53260	183 aa	Predicted RBP	4.58	□□□□□ -1.68
UBX4	YMR067C	YLR224W	Q05947	369 aa		4.58	□□□□□ -1.68
UBX4	YMR067C	TPO1	Q07824	586 aa		4.58	□□□□□ -1.68
UBX4	YMR067C	XYL2	Q07993	356 aa		4.58	□□□□□ -1.68
UBX4	YMR067C	OPI10	Q08202	246 aa		4.58	□□□□□ -1.68
UBX4	YMR067C	CDC12	P32468	407 aa	Known RBP	4.57	□□□□□ -1.68
UBX4	YMR067C	SCT1	P32784	759 aa		4.57	□□□□□ -1.68
UBX4	YMR067C	MRP8	P35719	219 aa		4.57	□□□□□ -1.68
UBX4	YMR067C	GIC1	P38785	314 aa		4.57	□□□□□ -1.68
UBX4	YMR067C	SAH1	P39954	449 aa	Known RBP	4.57	□□□□□ -1.68
UBX4	YMR067C	PSP2	P50109	593 aa	Known RBP	4.57	□□□□□ -1.68
UBX4	YMR067C	TMA10	Q06177	86 aa		4.57	□□□□□ -1.68
UBX4	YMR067C	TUB2	P02557	457 aa	Known RBP	4.56	□□□□□ -1.68
UBX4	YMR067C	HIS5	P07172	385 aa		4.56	□□□□□ -1.68
UBX4	YMR067C	ENA1	P13587	1091 aa		4.56	□□□□□ -1.68
UBX4	YMR067C	ATG19	P35193	415 aa		4.56	□□□□□ -1.68
UBX4	YMR067C	YKR078W	P36158	585 aa	Known RBP	4.56	□□□□□ -1.68
UBX4	YMR067C	VBA5	P36172	582 aa		4.56	□□□□□ -1.68
UBX4	YMR067C	ECM21	P38167	1117 aa	Known RBP	4.56	□□□□□ -1.68
UBX4	YMR067C	IOC3	P43596	787 aa		4.56	□□□□□ -1.68
UBX4	YMR067C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	not detected
UBX4	YMR067C	MCM6	P53091	1017 aa	Known RBP	4.56	□□□□□ -1.68
UBX4	YMR067C	YGR012W	P53206	393 aa		4.56	□□□□□ -1.68
UBX4	YMR067C	ENA2	Q01896	1091 aa		4.56	□□□□□ -1.68
UBX4	YMR067C	CDA1	Q06702	301 aa		4.56	□□□□□ -1.68
UBX4	YMR067C	ENA5	Q12691	1091 aa		4.56	□□□□□ -1.68
UBX4	YMR067C	HSF1	P10961	833 aa		4.55	□□□□□ -1.68
UBX4	YMR067C	HCM1	P25364	564 aa		4.55	□□□□□ -1.68
UBX4	YMR067C	TRM2	P33753	639 aa		4.55	□□□□□ -1.68
UBX4	YMR067C	CCC2	P38995	1004 aa		4.55	□□□□□ -1.68
UBX4	YMR067C	MBP1	P39678	833 aa		4.55	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 48 ms