RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C DLD1P32891 587 aa6.84□□□□□ -1.32
DEF1YKL054C STO1P34160 861 aaKnown RBP6.84□□□□□ -1.32
DEF1YKL054C NUP120P35729 1037 aa6.84□□□□□ -1.32
DEF1YKL054C VPS8P39702 1274 aa6.84□□□□□ -1.32
DEF1YKL054C EMG1Q06287 252 aaKnown RBP6.84□□□□□ -1.32
DEF1YKL054C HSP82P02829 709 aaKnown RBP6.83□□□□□ -1.32
DEF1YKL054C TPM1P17536 199 aaKnown RBP6.83□□□□□ -1.32
DEF1YKL054C NOP4P37838 685 aaKnown RBP6.83□□□□□ -1.32
DEF1YKL054C BSD2P38356 321 aa6.83□□□□□ -1.32
DEF1YKL054C PAN5P38787 379 aa6.83□□□□□ -1.32
DEF1YKL054C UTP7P40055 554 aaKnown RBP6.83□□□□□ -1.32
DEF1YKL054C VPS30Q02948 557 aa6.83□□□□□ -1.32
DEF1YKL054C TIF35Q04067 274 aaKnown RBP6.83□□□□□ -1.32
DEF1YKL054C Q0182Q9ZZW1 134 aa6.83□□□□□ -1.32
DEF1YKL054C INO1P11986 533 aa6.82□□□□□ -1.32
DEF1YKL054C YLR352WQ06479 807 aa6.82□□□□□ -1.32
DEF1YKL054C RAD53P22216 821 aa6.82□□□□□ -1.32
DEF1YKL054C HEM12P32347 362 aaPredicted RBP6.82□□□□□ -1.32
DEF1YKL054C YEL1P34225 687 aa6.82□□□□□ -1.32
DEF1YKL054C NUP85P46673 744 aa6.82□□□□□ -1.32
DEF1YKL054C SUM1P46676 1062 aa6.82□□□□□ -1.32
DEF1YKL054C ENT3P47160 408 aa6.82□□□□□ -1.32
DEF1YKL054C RPC31P17890 251 aa6.81□□□□□ -1.32
DEF1YKL054C SFL1P20134 766 aa6.81□□□□□ -1.32
DEF1YKL054C BEM3P32873 1128 aa6.81□□□□□ -1.32
DEF1YKL054C TBS1P38114 1094 aa6.81□□□□□ -1.32
DEF1YKL054C RIM11P38615 370 aa6.81□□□□□ -1.32
DEF1YKL054C SSN3P39073 555 aa6.81□□□□□ -1.32
DEF1YKL054C QRI7P43122 407 aa6.81□□□□□ -1.32
DEF1YKL054C YGR016WP53209 190 aa6.81□□□□□ -1.32
DEF1YKL054C ROD1Q02805 837 aa6.81□□□□□ -1.32
DEF1YKL054C OPY2Q06810 360 aa6.81□□□□□ -1.32
DEF1YKL054C YTM1Q12024 460 aaPredicted RBP6.81□□□□□ -1.32
DEF1YKL054C TY1B-AO13527 1196 aaKnown RBP6.81□□□□□ -1.32
DEF1YKL054C PYC2P32327 1180 aaKnown RBP6.81□□□□□ -1.32
DEF1YKL054C PIN4P34217 668 aaKnown RBP RIP-Chip data6.81□□□□□ -1.32not detected
DEF1YKL054C TMA108P40462 946 aa6.81□□□□□ -1.32
DEF1YKL054C YJR098CP47139 656 aa6.81□□□□□ -1.32
DEF1YKL054C RSM26P47141 266 aa6.81□□□□□ -1.32
DEF1YKL054C SGM1P47166 707 aa6.81□□□□□ -1.32
DEF1YKL054C TOM70P07213 617 aaKnown RBP6.8□□□□□ -1.32
DEF1YKL054C MLF3P32047 452 aa6.8□□□□□ -1.32
DEF1YKL054C YBR284WP38150 797 aa6.8□□□□□ -1.32
DEF1YKL054C CKB2P38930 258 aa6.8□□□□□ -1.32
DEF1YKL054C PHM6Q05637 104 aa6.8□□□□□ -1.32
DEF1YKL054C MSD1P15179 658 aaKnown RBP6.8□□□□□ -1.32
DEF1YKL054C PRP19P32523 503 aaKnown RBP6.8□□□□□ -1.32
DEF1YKL054C DOT6P40059 670 aaKnown RBP6.8□□□□□ -1.32
DEF1YKL054C HOS2P53096 452 aaPredicted RBP6.8□□□□□ -1.32
DEF1YKL054C SPN1Q06505 410 aaPredicted RBP6.8□□□□□ -1.32
DEF1YKL054C BRE4Q07660 1125 aa6.8□□□□□ -1.32
DEF1YKL054C CYB2P00175 591 aa6.79□□□□□ -1.32
DEF1YKL054C RPP2BP02400 110 aaKnown RBP6.79□□□□□ -1.32
DEF1YKL054C GSY1P23337 708 aa6.79□□□□□ -1.32
DEF1YKL054C MSH3P25336 1018 aa6.79□□□□□ -1.32
DEF1YKL054C ANP1P32629 500 aa6.79□□□□□ -1.32
DEF1YKL054C SQT1P35184 431 aa6.79□□□□□ -1.32
DEF1YKL054C GIP1P38229 639 aa6.79□□□□□ -1.32
DEF1YKL054C BCD1P38772 366 aa6.79□□□□□ -1.32
DEF1YKL054C DLD3P39976 496 aaKnown RBP6.79□□□□□ -1.32
DEF1YKL054C GZF3P42944 551 aaKnown RBP6.79□□□□□ -1.32
DEF1YKL054C UPF3P48412 387 aaKnown RBP6.79□□□□□ -1.32
DEF1YKL054C CTF4Q01454 927 aa6.79□□□□□ -1.32
DEF1YKL054C PSH1Q12161 406 aa6.79□□□□□ -1.32
DEF1YKL054C RKM4Q12504 494 aa6.79□□□□□ -1.32
DEF1YKL054C SPS1P08458 490 aa6.78□□□□□ -1.32
DEF1YKL054C RAD18P10862 487 aa6.78□□□□□ -1.32
DEF1YKL054C PCM1P38628 557 aaKnown RBP6.78□□□□□ -1.32
DEF1YKL054C MEP1P40260 492 aa6.78□□□□□ -1.32
DEF1YKL054C YGL176CP46945 554 aa6.78□□□□□ -1.32
DEF1YKL054C GTR1Q00582 310 aa6.78□□□□□ -1.32
DEF1YKL054C GCR2Q01722 534 aa6.78□□□□□ -1.32
DEF1YKL054C SPC19Q03954 165 aa6.78□□□□□ -1.32
DEF1YKL054C PMT7Q06644 662 aa6.78□□□□□ -1.32
DEF1YKL054C RPS31P05759 152 aaKnown RBP6.78□□□□□ -1.32
DEF1YKL054C SMY2P32909 740 aaKnown RBP6.78□□□□□ -1.32
DEF1YKL054C PET10P36139 283 aa6.78□□□□□ -1.32
DEF1YKL054C ABZ1P37254 787 aaPredicted RBP6.78□□□□□ -1.32
DEF1YKL054C SIP5P40210 489 aaKnown RBP6.78□□□□□ -1.32
DEF1YKL054C EIS1Q05050 843 aaKnown RBP6.78□□□□□ -1.32
DEF1YKL054C NAT1P12945 854 aaKnown RBP6.77□□□□□ -1.33
DEF1YKL054C SLA1P32790 1244 aa6.77□□□□□ -1.33
DEF1YKL054C YKL050CP35736 922 aa6.77□□□□□ -1.33
DEF1YKL054C BIT2P38346 545 aa6.77□□□□□ -1.33
DEF1YKL054C SAH1P39954 449 aaKnown RBP6.77□□□□□ -1.33
DEF1YKL054C GPI8P49018 411 aa6.77□□□□□ -1.33
DEF1YKL054C CAF120P53836 1060 aa6.77□□□□□ -1.33
DEF1YKL054C PEX13P80667 386 aa6.77□□□□□ -1.33
DEF1YKL054C PKH1Q03407 766 aa6.77□□□□□ -1.33
DEF1YKL054C OPT2Q06593 877 aa6.77□□□□□ -1.33
DEF1YKL054C YOR296WQ08748 1289 aa6.77□□□□□ -1.33
DEF1YKL054C TY1A-DR3Q12441 440 aa6.77□□□□□ -1.33
DEF1YKL054C SPO16P17122 198 aa6.77□□□□□ -1.33
DEF1YKL054C SPC29P33419 253 aa6.77□□□□□ -1.33
DEF1YKL054C AIM46P38885 310 aa6.77□□□□□ -1.33
DEF1YKL054C CNN1P43618 361 aa6.77□□□□□ -1.33
DEF1YKL054C KRR1P25586 316 aaPredicted RBP6.76□□□□□ -1.33
DEF1YKL054C MET22P32179 357 aa6.76□□□□□ -1.33
DEF1YKL054C VPH1P32563 840 aaKnown RBP6.76□□□□□ -1.33
DEF1YKL054C VMA8P32610 256 aaKnown RBP6.76□□□□□ -1.33
Retrieved 100 of 5,963 RNA–protein pairs in 615.1 ms