RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	SRM1	P21827	482 aa		4.89	□□□□□ -1.63
UBX5	YDR330W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
UBX5	YDR330W	CEM1	P39525	442 aa		4.89	□□□□□ -1.63
UBX5	YDR330W	GCV1	P48015	400 aa		4.89	□□□□□ -1.63
UBX5	YDR330W	SOK2	P53438	785 aa	Predicted RBP	4.89	□□□□□ -1.63
UBX5	YDR330W	MEC3	Q02574	474 aa		4.89	□□□□□ -1.63
UBX5	YDR330W	SPO71	Q03868	1245 aa		4.89	□□□□□ -1.63
UBX5	YDR330W	LAP2	Q10740	671 aa		4.89	□□□□□ -1.63
UBX5	YDR330W	BNI1	P41832	1953 aa		4.89	□□□□□ -1.63
UBX5	YDR330W	PDR11	P40550	1411 aa		4.88	□□□□□ -1.63
UBX5	YDR330W	MSH2	P25847	964 aa		4.88	□□□□□ -1.63
UBX5	YDR330W	SFP1	P32432	683 aa		4.88	□□□□□ -1.63
UBX5	YDR330W	CDC11	P32458	415 aa		4.88	□□□□□ -1.63
UBX5	YDR330W	CRP1	P38845	465 aa	Known RBP	4.88	□□□□□ -1.63
UBX5	YDR330W	YNR063W	P53749	607 aa		4.88	□□□□□ -1.63
UBX5	YDR330W	YLL054C	Q12244	843 aa		4.88	□□□□□ -1.63
UBX5	YDR330W	RAV1	P47104	1357 aa		4.88	□□□□□ -1.63
UBX5	YDR330W	ALG3	P38179	458 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	RGD1	P38339	666 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	REI1	P38344	393 aa	Predicted RBP	4.87	□□□□□ -1.63
UBX5	YDR330W	HSE1	P38753	452 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	CCC2	P38995	1004 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	MBP1	P39678	833 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	GEM1	P39722	662 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	YJR008W	P47085	338 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	DNM1	P54861	757 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	YPL066W	Q12194	479 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	SLP1	Q12232	587 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	PTC5	Q12511	572 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	IML1	P47170	1584 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	RTC1	Q08281	1341 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	UBP12	P39538	1254 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	GIP2	P40036	548 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	MPH1	P40562	993 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	HSV2	P50079	448 aa	Predicted RBP	4.87	□□□□□ -1.63
UBX5	YDR330W	RTA1	P53047	317 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	UGO1	Q03327	502 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	SRC1	Q03707	834 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	SYT1	Q06836	1226 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	NTG2	Q08214	380 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	AVO1	Q08236	1176 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	GNT1	Q12096	491 aa		4.87	□□□□□ -1.63
UBX5	YDR330W	TY3B-I	Q7LHG5	1498 aa	Known RBP	4.86	□□□□□ -1.63
UBX5	YDR330W	SEC3	P33332	1336 aa	Known RBP	4.86	□□□□□ -1.63
UBX5	YDR330W	TOP1	P04786	769 aa		4.86	□□□□□ -1.63
UBX5	YDR330W	MLS1	P30952	554 aa		4.86	□□□□□ -1.63
UBX5	YDR330W	AFG2	P32794	780 aa		4.86	□□□□□ -1.63
UBX5	YDR330W	PAN5	P38787	379 aa		4.86	□□□□□ -1.63
UBX5	YDR330W	YAR028W	P39548	234 aa		4.86	□□□□□ -1.63
UBX5	YDR330W	SPO74	P45819	413 aa		4.86	□□□□□ -1.63
UBX5	YDR330W	VPS53	P47061	822 aa		4.86	□□□□□ -1.63
UBX5	YDR330W	RTS3	P53289	263 aa		4.86	□□□□□ -1.63
UBX5	YDR330W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.86	□□□□□ -1.63	not detected
UBX5	YDR330W	YMR074C	Q04773	145 aa		4.86	□□□□□ -1.63
UBX5	YDR330W	LCB5	Q06147	687 aa	Known RBP	4.86	□□□□□ -1.63
UBX5	YDR330W	DNF2	Q12675	1612 aa		4.85	□□□□□ -1.63
UBX5	YDR330W	ADR1	P07248	1323 aa		4.85	□□□□□ -1.63
UBX5	YDR330W	SAC7	P17121	654 aa		4.85	□□□□□ -1.63
UBX5	YDR330W	BET3	P36149	193 aa		4.85	□□□□□ -1.63
UBX5	YDR330W	YEN1	P40028	759 aa		4.85	□□□□□ -1.63
UBX5	YDR330W	YDR444W	Q04093	687 aa		4.85	□□□□□ -1.63
UBX5	YDR330W	GIC2	Q06648	383 aa		4.85	□□□□□ -1.63
UBX5	YDR330W	TOM70	P07213	617 aa	Known RBP	4.84	□□□□□ -1.63
UBX5	YDR330W	KNS1	P32350	737 aa	Predicted RBP	4.84	□□□□□ -1.63
UBX5	YDR330W	ENP1	P38333	483 aa	Known RBP	4.84	□□□□□ -1.63
UBX5	YDR330W	SPP382	Q06411	708 aa	Predicted RBP	4.84	□□□□□ -1.63
UBX5	YDR330W	YDR306C	Q06640	478 aa		4.84	□□□□□ -1.63
UBX5	YDR330W	HBN1	Q96VH4	193 aa		4.84	□□□□□ -1.63
UBX5	YDR330W	NUP192	P47054	1683 aa		4.84	□□□□□ -1.64
UBX5	YDR330W	SPT7	P35177	1332 aa		4.84	□□□□□ -1.64
UBX5	YDR330W	PDC5	P16467	563 aa	Known RBP	4.83	□□□□□ -1.64
UBX5	YDR330W	RPL8A	P17076	256 aa	Known RBP	4.83	□□□□□ -1.64
UBX5	YDR330W	NFS1	P25374	497 aa		4.83	□□□□□ -1.64
UBX5	YDR330W	AAR2	P32357	355 aa	Predicted RBP	4.83	□□□□□ -1.64
UBX5	YDR330W	PEX6	P33760	1030 aa		4.83	□□□□□ -1.64
UBX5	YDR330W	GDH3	P39708	457 aa		4.83	□□□□□ -1.64
UBX5	YDR330W	TED1	P40533	473 aa		4.83	□□□□□ -1.64
UBX5	YDR330W	YNR029C	P53729	429 aa	Known RBP	4.83	□□□□□ -1.64
UBX5	YDR330W	GIS4	Q04233	774 aa		4.83	□□□□□ -1.64
UBX5	YDR330W	YPL260W	Q08977	551 aa		4.83	□□□□□ -1.64
UBX5	YDR330W	ELG1	Q12050	791 aa		4.83	□□□□□ -1.64
UBX5	YDR330W	NAR1	P23503	491 aa	Known RBP	4.82	□□□□□ -1.64
UBX5	YDR330W	PPH3	P32345	308 aa		4.82	□□□□□ -1.64
UBX5	YDR330W	HBS1	P32769	611 aa	Known RBP	4.82	□□□□□ -1.64
UBX5	YDR330W	DOM34	P33309	386 aa		4.82	□□□□□ -1.64
UBX5	YDR330W	SIP5	P40210	489 aa	Known RBP	4.82	□□□□□ -1.64
UBX5	YDR330W	HLJ1	P48353	224 aa		4.82	□□□□□ -1.64
UBX5	YDR330W	TFB2	Q02939	513 aa		4.82	□□□□□ -1.64
UBX5	YDR330W	ALG6	Q12001	544 aa	Known RBP	4.82	□□□□□ -1.64
UBX5	YDR330W	MHP1	P43638	1398 aa		4.82	□□□□□ -1.64
UBX5	YDR330W	GSY1	P23337	708 aa		4.82	□□□□□ -1.64
UBX5	YDR330W	MET22	P32179	357 aa		4.82	□□□□□ -1.64
UBX5	YDR330W	MAE1	P36013	669 aa	Known RBP	4.82	□□□□□ -1.64
UBX5	YDR330W	ESL2	P36168	1195 aa		4.82	□□□□□ -1.64
UBX5	YDR330W	TAF5	P38129	798 aa		4.82	□□□□□ -1.64
UBX5	YDR330W	ALG14	P38242	237 aa		4.82	□□□□□ -1.64
UBX5	YDR330W	YIR007W	P40566	764 aa		4.82	□□□□□ -1.64
UBX5	YDR330W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.82	□□□□□ -1.64	not detected
UBX5	YDR330W	ATG36	P46983	293 aa		4.82	□□□□□ -1.64
UBX5	YDR330W	ZDS1	P50111	915 aa	Known RBP	4.82	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 20.5 ms