RNA–Protein interactions for RNA: YAL059W

ECM1, Transcript of Pre-ribosomal factor involved in 60S ribosomal protein subunit export, yeast

Gene ECM1, Length 639 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ECM1	YAL059W	BRE4	Q07660	1125 aa		6.21	□□□□□ -1.42
ECM1	YAL059W	HIF1	Q12373	385 aa		6.21	□□□□□ -1.42
ECM1	YAL059W	GLT1	Q12680	2145 aa	Known RBP	6.2	□□□□□ -1.42
ECM1	YAL059W	COQ4	O13525	335 aa		6.2	□□□□□ -1.42
ECM1	YAL059W	PTC7	P38797	343 aa		6.2	□□□□□ -1.42
ECM1	YAL059W	VPS27	P40343	622 aa	Known RBP	6.2	□□□□□ -1.42
ECM1	YAL059W	SSY1	Q03770	852 aa		6.2	□□□□□ -1.42
ECM1	YAL059W	SPO20	Q04359	397 aa		6.2	□□□□□ -1.42
ECM1	YAL059W	YER152C	P10356	443 aa		6.19	□□□□□ -1.42
ECM1	YAL059W	PWP2	P25635	923 aa	Known RBP	6.19	□□□□□ -1.42
ECM1	YAL059W	MDL2	P33311	773 aa		6.19	□□□□□ -1.42
ECM1	YAL059W	MFT1	P33441	392 aa	Known RBP	6.19	□□□□□ -1.42
ECM1	YAL059W	RPN3	P40016	523 aa	Known RBP	6.19	□□□□□ -1.42
ECM1	YAL059W	GTS1	P40956	396 aa		6.19	□□□□□ -1.42
ECM1	YAL059W	TNA1	P53322	534 aa		6.19	□□□□□ -1.42
ECM1	YAL059W	ESC2	Q06340	456 aa		6.19	□□□□□ -1.42
ECM1	YAL059W	RCL1	Q08096	367 aa	Predicted RBP	6.19	□□□□□ -1.42
ECM1	YAL059W	FAL1	Q12099	399 aa	Known RBP	6.19	□□□□□ -1.42
ECM1	YAL059W	NKP1	Q12493	238 aa		6.19	□□□□□ -1.42
ECM1	YAL059W	PRI2	P20457	528 aa		6.18	□□□□□ -1.42
ECM1	YAL059W	TRX2	P22803	104 aa	Known RBP	6.18	□□□□□ -1.42
ECM1	YAL059W	ADP1	P25371	1049 aa		6.18	□□□□□ -1.42
ECM1	YAL059W	SRO9	P25567	434 aa	Known RBP	6.18	□□□□□ -1.42
ECM1	YAL059W	VPS24	P36095	224 aa	Known RBP	6.18	□□□□□ -1.42
ECM1	YAL059W	NUP82	P40368	713 aa		6.18	□□□□□ -1.42
ECM1	YAL059W	YFR016C	P43597	1233 aa	Known RBP	6.18	□□□□□ -1.42
ECM1	YAL059W	HOS3	Q02959	697 aa	Known RBP	6.18	□□□□□ -1.42
ECM1	YAL059W	COG4	Q06096	861 aa		6.18	□□□□□ -1.42
ECM1	YAL059W	GNT1	Q12096	491 aa		6.18	□□□□□ -1.42
ECM1	YAL059W	YPL066W	Q12194	479 aa		6.18	□□□□□ -1.42
ECM1	YAL059W	SNF5	P18480	905 aa		6.17	□□□□□ -1.42
ECM1	YAL059W	BAS1	P22035	811 aa		6.17	□□□□□ -1.42
ECM1	YAL059W	DPB3	P27344	201 aa		6.17	□□□□□ -1.42
ECM1	YAL059W	ABD1	P32783	436 aa	Predicted RBP	6.17	□□□□□ -1.42
ECM1	YAL059W	YKL107W	P34251	309 aa		6.17	□□□□□ -1.42
ECM1	YAL059W	FUI1	P38196	639 aa		6.17	□□□□□ -1.42
ECM1	YAL059W	VMS1	Q04311	632 aa	Known RBP	6.17	□□□□□ -1.42
ECM1	YAL059W	YLR225C	Q05948	407 aa	Known RBP	6.17	□□□□□ -1.42
ECM1	YAL059W	RKM4	Q12504	494 aa		6.17	□□□□□ -1.42
ECM1	YAL059W	THS1	P04801	734 aa	Known RBP	6.16	□□□□□ -1.42
ECM1	YAL059W	YKL069W	P36088	180 aa		6.16	□□□□□ -1.42
ECM1	YAL059W	BAP2	P38084	609 aa		6.16	□□□□□ -1.42
ECM1	YAL059W	CCZ1	P38273	704 aa		6.16	□□□□□ -1.42
ECM1	YAL059W	CRP1	P38845	465 aa	Known RBP	6.16	□□□□□ -1.42
ECM1	YAL059W	YFL054C	P43549	646 aa		6.16	□□□□□ -1.42
ECM1	YAL059W	YGL176C	P46945	554 aa		6.16	□□□□□ -1.42
ECM1	YAL059W	HUL5	P53119	910 aa		6.16	□□□□□ -1.42
ECM1	YAL059W	ENT2	Q05785	613 aa		6.16	□□□□□ -1.42
ECM1	YAL059W	OPI10	Q08202	246 aa		6.16	□□□□□ -1.42
ECM1	YAL059W	SRM1	P21827	482 aa		6.15	□□□□□ -1.42
ECM1	YAL059W	HSP78	P33416	811 aa		6.15	□□□□□ -1.42
ECM1	YAL059W	ENP1	P38333	483 aa	Known RBP	6.15	□□□□□ -1.42
ECM1	YAL059W	IES1	P43579	692 aa		6.15	□□□□□ -1.42
ECM1	YAL059W	RPS0B	P46654	252 aa	Known RBP	6.15	□□□□□ -1.42
ECM1	YAL059W	RSC58	Q07979	502 aa		6.15	□□□□□ -1.42
ECM1	YAL059W	LPX1	Q12405	387 aa	Known RBP	6.15	□□□□□ -1.42
ECM1	YAL059W	PHO8	P11491	566 aa		6.14	□□□□□ -1.43
ECM1	YAL059W	MRC1	P25588	1096 aa		6.14	□□□□□ -1.43
ECM1	YAL059W	AIM26	P32858	118 aa		6.14	□□□□□ -1.43
ECM1	YAL059W	PIK1	P39104	1066 aa		6.14	□□□□□ -1.43
ECM1	YAL059W	FOL1	P53848	824 aa		6.14	□□□□□ -1.43
ECM1	YAL059W	NBA1	Q08229	501 aa	Known RBP	6.14	□□□□□ -1.43
ECM1	YAL059W	RPL11A	P0C0W9	174 aa	Known RBP	6.13	□□□□□ -1.43
ECM1	YAL059W	SBA1	P28707	216 aa	Known RBP	6.13	□□□□□ -1.43
ECM1	YAL059W	ESF2	P53743	316 aa	Known RBP	6.13	□□□□□ -1.43
ECM1	YAL059W	SPP382	Q06411	708 aa	Predicted RBP	6.13	□□□□□ -1.43
ECM1	YAL059W	RPL11B	Q3E757	174 aa	Predicted RBP	6.13	□□□□□ -1.43
ECM1	YAL059W	GRX1	P25373	110 aa	Known RBP	6.12	□□□□□ -1.43
ECM1	YAL059W	AGP1	P25376	633 aa		6.12	□□□□□ -1.43
ECM1	YAL059W	RPN12	P32496	274 aa		6.12	□□□□□ -1.43
ECM1	YAL059W	TIM23	P32897	222 aa		6.12	□□□□□ -1.43
ECM1	YAL059W	RPS0A	P32905	252 aa	Known RBP	6.12	□□□□□ -1.43
ECM1	YAL059W	MXR1	P40029	184 aa		6.12	□□□□□ -1.43
ECM1	YAL059W	SIP5	P40210	489 aa	Known RBP	6.12	□□□□□ -1.43
ECM1	YAL059W	DBP2	P24783	546 aa	Known RBP	6.11	□□□□□ -1.43
ECM1	YAL059W	POL12	P38121	705 aa	Predicted RBP	6.11	□□□□□ -1.43
ECM1	YAL059W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	6.11	□□□□□ -1.43	not detected
ECM1	YAL059W	ORC3	P54790	616 aa		6.11	□□□□□ -1.43
ECM1	YAL059W	RSB1	Q08417	382 aa		6.11	□□□□□ -1.43
ECM1	YAL059W	YLR125W	Q12138	136 aa		6.11	□□□□□ -1.43
ECM1	YAL059W	THI4	P32318	326 aa		6.1	□□□□□ -1.43
ECM1	YAL059W	PNT1	P38969	423 aa		6.1	□□□□□ -1.43
ECM1	YAL059W	SNF7	P39929	240 aa	Known RBP	6.1	□□□□□ -1.43
ECM1	YAL059W	SPF1	P39986	1215 aa	Known RBP	6.1	□□□□□ -1.43
ECM1	YAL059W	TDA5	Q06417	326 aa	Known RBP	6.1	□□□□□ -1.43
ECM1	YAL059W	PPM2	Q08282	695 aa		6.1	□□□□□ -1.43
ECM1	YAL059W	ACM1	Q08981	209 aa		6.1	□□□□□ -1.43
ECM1	YAL059W	ERP4	Q12450	207 aa		6.1	□□□□□ -1.43
ECM1	YAL059W	DFG16	Q99234	619 aa		6.1	□□□□□ -1.43
ECM1	YAL059W	SPS1	P08458	490 aa		6.09	□□□□□ -1.43
ECM1	YAL059W	RAD4	P14736	754 aa		6.09	□□□□□ -1.43
ECM1	YAL059W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	6.09	□□□□□ -1.43	not detected
ECM1	YAL059W	LRG1	P35688	1017 aa		6.09	□□□□□ -1.43
ECM1	YAL059W	VBA5	P36172	582 aa		6.09	□□□□□ -1.43
ECM1	YAL059W	PAF1	P38351	445 aa		6.09	□□□□□ -1.43
ECM1	YAL059W	TIM54	P47045	478 aa		6.09	□□□□□ -1.43
ECM1	YAL059W	PEX8	P53248	589 aa		6.09	□□□□□ -1.43
ECM1	YAL059W	ATG16	Q03818	150 aa		6.09	□□□□□ -1.43
ECM1	YAL059W	SHE9	Q04172	456 aa		6.09	□□□□□ -1.43
ECM1	YAL059W	SLA2	P33338	968 aa		6.08	□□□□□ -1.44

Retrieved 100 of 5,963 RNA–protein pairs in 12.3 ms