RNA–Protein interactions for RNA: ENST00000635675.2

LINC00339-210, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,404 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-210ENST00000635675 SPON1Q9HCB6 807 aa12.75□□□□□ -0.37
LINC00339-210ENST00000635675 CCDC87Q9NVE4 849 aa12.75□□□□□ -0.37
LINC00339-210ENST00000635675 RTCBQ9Y3I0 505 aaKnown RBP12.75□□□□□ -0.37
LINC00339-210ENST00000635675 PRAMEF22A3QJZ6 481 aa12.74□□□□□ -0.37
LINC00339-210ENST00000635675 PHF14O94880 888 aa12.74□□□□□ -0.37
LINC00339-210ENST00000635675 ADRA2BP18089 450 aa12.74□□□□□ -0.37
LINC00339-210ENST00000635675 TSPYL4Q9UJ04 414 aa12.74□□□□□ -0.37
LINC00339-210ENST00000635675 ATF5Q9Y2D1 282 aaPredicted RBP12.74□□□□□ -0.37
LINC00339-210ENST00000635675 LRP5O75197 1615 aa12.73□□□□□ -0.37
LINC00339-210ENST00000635675 SENP3-EIF4A1A0A087X0R7 540 aa12.73□□□□□ -0.37
LINC00339-210ENST00000635675 PTGER2P43116 358 aa12.73□□□□□ -0.37
LINC00339-210ENST00000635675 TRAPPC3LQ5T215 181 aa12.73□□□□□ -0.37
LINC00339-210ENST00000635675 ARHGEF1Q92888 912 aaKnown RBP12.73□□□□□ -0.37
LINC00339-210ENST00000635675 CFAP44Q96MT7 982 aa12.73□□□□□ -0.37
LINC00339-210ENST00000635675 USP16Q9Y5T5 823 aa12.73□□□□□ -0.37
LINC00339-210ENST00000635675 GIGYF1O75420 1035 aaPredicted RBP12.72□□□□□ -0.37
LINC00339-210ENST00000635675 ZNF853P0CG23 659 aa12.72□□□□□ -0.37
LINC00339-210ENST00000635675 CALD1Q05682 793 aaKnown RBP12.72□□□□□ -0.37
LINC00339-210ENST00000635675 WWC1Q8IX03 1113 aa12.72□□□□□ -0.37
LINC00339-210ENST00000635675 SGIP1Q9BQI5 828 aa12.72□□□□□ -0.37
LINC00339-210ENST00000635675 ZBTB1Q9Y2K1 713 aa12.72□□□□□ -0.37
LINC00339-210ENST00000635675 SOS1Q07889 1333 aaPredicted RBP12.72□□□□□ -0.37
LINC00339-210ENST00000635675 IFT57Q9NWB7 429 aa12.71□□□□□ -0.37
LINC00339-210ENST00000635675 LAS1LQ9Y4W2 734 aaKnown RBP12.71□□□□□ -0.37
LINC00339-210ENST00000635675 COL24A1Q17RW2 1714 aa12.71□□□□□ -0.37
LINC00339-210ENST00000635675 SRCAPQ6ZRS2 3230 aa12.71□□□□□ -0.38
LINC00339-210ENST00000635675 A1BGP04217 495 aa12.71□□□□□ -0.38
LINC00339-210ENST00000635675 CANXP27824 592 aaKnown RBP12.71□□□□□ -0.38
LINC00339-210ENST00000635675 RFC4P35249 363 aa12.7□□□□□ -0.38
LINC00339-210ENST00000635675 EIF5P55010 431 aaKnown RBP12.7□□□□□ -0.38
LINC00339-210ENST00000635675 GNAI1P63096 354 aa12.7□□□□□ -0.38
LINC00339-210ENST00000635675 NGEFQ8N5V2 710 aa12.7□□□□□ -0.38
LINC00339-210ENST00000635675 MBIPQ9NS73 344 aa12.7□□□□□ -0.38
LINC00339-210ENST00000635675 NBPF26B4DH59 902 aa12.69□□□□□ -0.38
LINC00339-210ENST00000635675 IL6STP40189 918 aaPredicted RBP12.69□□□□□ -0.38
LINC00339-210ENST00000635675 MSL1Q68DK7 614 aa12.69□□□□□ -0.38
LINC00339-210ENST00000635675 NBPF10Q6P3W6 841 aaKnown RBP12.69□□□□□ -0.38
LINC00339-210ENST00000635675 NBPF15Q8N660 670 aa12.69□□□□□ -0.38
LINC00339-210ENST00000635675 SALL2Q9Y467 1007 aaPredicted RBP12.69□□□□□ -0.38
LINC00339-210ENST00000635675 C4AP0C0L4 1744 aa12.68□□□□□ -0.38
LINC00339-210ENST00000635675 KRT24Q2M2I5 525 aa12.68□□□□□ -0.38
LINC00339-210ENST00000635675 WDR63Q8IWG1 891 aa12.68□□□□□ -0.38
LINC00339-210ENST00000635675 COL15A1P39059 1388 aa12.68□□□□□ -0.38
LINC00339-210ENST00000635675 LAMB4A4D0S4 1761 aa12.67□□□□□ -0.38
LINC00339-210ENST00000635675 IL16Q14005 1332 aa12.67□□□□□ -0.38
LINC00339-210ENST00000635675 USP42Q9H9J4 1324 aaKnown RBP12.67□□□□□ -0.38
LINC00339-210ENST00000635675 GYS1P13807 737 aa12.67□□□□□ -0.38
LINC00339-210ENST00000635675 PIP4K2AP48426 406 aaPredicted RBP12.67□□□□□ -0.38
LINC00339-210ENST00000635675 NLGN1Q8N2Q7 840 aa12.67□□□□□ -0.38
LINC00339-210ENST00000635675 SRP68Q9UHB9 627 aaKnown RBP12.67□□□□□ -0.38
LINC00339-210ENST00000635675 NARFQ9UHQ1 456 aa12.67□□□□□ -0.38
LINC00339-210ENST00000635675 A0A087WZG4 1122 aa12.66□□□□□ -0.38
LINC00339-210ENST00000635675 POLD1P28340 1107 aa12.66□□□□□ -0.38
LINC00339-210ENST00000635675 ARXQ96QS3 562 aa12.66□□□□□ -0.38
LINC00339-210ENST00000635675 ZPR1O75312 459 aa12.65□□□□□ -0.38
LINC00339-210ENST00000635675 USPL1Q5W0Q7 1092 aa12.65□□□□□ -0.38
LINC00339-210ENST00000635675 PPP1R1BQ9UD71 204 aaPredicted RBP12.65□□□□□ -0.38
LINC00339-210ENST00000635675 ZNF521Q96K83 1311 aa12.65□□□□□ -0.38
LINC00339-210ENST00000635675 HOXB7P09629 217 aa12.64□□□□□ -0.39
LINC00339-210ENST00000635675 EIF2S2P20042 333 aaKnown RBP12.64□□□□□ -0.39
LINC00339-210ENST00000635675 FKBP8Q14318 412 aa12.64□□□□□ -0.39
LINC00339-210ENST00000635675 PDIA6Q15084 440 aa12.64□□□□□ -0.39
LINC00339-210ENST00000635675 DUSP27Q5VZP5 1158 aa12.64□□□□□ -0.39
LINC00339-210ENST00000635675 TSR2Q969E8 191 aaKnown RBP12.64□□□□□ -0.39
LINC00339-210ENST00000635675 BCL2L12Q9HB09 334 aa12.64□□□□□ -0.39
LINC00339-210ENST00000635675 TBC1D2BQ9UPU7 963 aa12.64□□□□□ -0.39
LINC00339-210ENST00000635675 ZNF330Q9Y3S2 320 aaPredicted RBP12.64□□□□□ -0.39
LINC00339-210ENST00000635675 ERBB4Q15303 1308 aa12.64□□□□□ -0.39
LINC00339-210ENST00000635675 MMP10P09238 476 aa12.63□□□□□ -0.39
LINC00339-210ENST00000635675 LRP10Q7Z4F1 713 aa12.63□□□□□ -0.39
LINC00339-210ENST00000635675 NPM2Q86SE8 214 aaKnown RBP12.63□□□□□ -0.39
LINC00339-210ENST00000635675 C8orf58Q8NAV2 365 aa12.63□□□□□ -0.39
LINC00339-210ENST00000635675 SPINK5Q9NQ38 1064 aaPredicted RBP12.63□□□□□ -0.39
LINC00339-210ENST00000635675 CAMTA2O94983 1202 aa12.62□□□□□ -0.39
LINC00339-210ENST00000635675 TM4SF1P30408 202 aa12.62□□□□□ -0.39
LINC00339-210ENST00000635675 DZIP3Q86Y13 1208 aaKnown RBP12.62□□□□□ -0.39
LINC00339-210ENST00000635675 ELL2O00472 640 aaPredicted RBP12.62□□□□□ -0.39
LINC00339-210ENST00000635675 MYL6BP14649 208 aa12.62□□□□□ -0.39
LINC00339-210ENST00000635675 NECTIN2Q92692 538 aa12.62□□□□□ -0.39
LINC00339-210ENST00000635675 FHDC1Q9C0D6 1143 aaPredicted RBP12.62□□□□□ -0.39
LINC00339-210ENST00000635675 FANCIQ9NVI1 1328 aa12.61□□□□□ -0.39
LINC00339-210ENST00000635675 NFIXQ14938 502 aa12.61□□□□□ -0.39
LINC00339-210ENST00000635675 PROSER3Q2NL68 480 aa12.61□□□□□ -0.39
LINC00339-210ENST00000635675 HDGFL1Q5TGJ6 251 aa12.61□□□□□ -0.39
LINC00339-210ENST00000635675 TSPYL6Q8N831 410 aa12.61□□□□□ -0.39
LINC00339-210ENST00000635675 SYT17Q9BSW7 474 aa12.61□□□□□ -0.39
LINC00339-210ENST00000635675 DDX21Q9NR30 783 aaKnown RBP eCLIP12.61□□□□□ -0.39
LINC00339-210ENST00000635675 RGL2O15211 777 aa12.6□□□□□ -0.39
LINC00339-210ENST00000635675 ANXA1P04083 346 aa12.6□□□□□ -0.39
LINC00339-210ENST00000635675 DDR1Q08345 913 aa12.6□□□□□ -0.39
LINC00339-210ENST00000635675 CLEC4GQ6UXB4 293 aa12.6□□□□□ -0.39
LINC00339-210ENST00000635675 TTLL7Q6ZT98 887 aa12.6□□□□□ -0.39
LINC00339-210ENST00000635675 MYH16Q9H6N6 1097 aa12.6□□□□□ -0.39
LINC00339-210ENST00000635675 SCN7AQ01118 1682 aa12.59□□□□□ -0.39
LINC00339-210ENST00000635675 ERVV-1B6SEH8 477 aa12.59□□□□□ -0.39
LINC00339-210ENST00000635675 POLRMTO00411 1230 aaKnown RBP12.59□□□□□ -0.39
LINC00339-210ENST00000635675 GOLGA2Q08379 1002 aa12.59□□□□□ -0.39
LINC00339-210ENST00000635675 TBC1D9BQ66K14 1250 aa12.59□□□□□ -0.39
LINC00339-210ENST00000635675 CHPF2Q9P2E5 772 aa12.59□□□□□ -0.39
LINC00339-210ENST00000635675 DBF4Q9UBU7 674 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms