RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 C4AP0C0L4 1744 aa25.43■■□□□ 1.66
SS18-208ENST00000577751 STARD3NLO95772 234 aa25.41■■□□□ 1.66
SS18-208ENST00000577751 ARXQ96QS3 562 aa25.41■■□□□ 1.66
SS18-208ENST00000577751 APAF1O14727 1248 aa25.4■■□□□ 1.66
SS18-208ENST00000577751 POLD1P28340 1107 aa25.4■■□□□ 1.66
SS18-208ENST00000577751 SOS1Q07889 1333 aaPredicted RBP25.39■■□□□ 1.66
SS18-208ENST00000577751 MSL1Q68DK7 614 aa25.39■■□□□ 1.66
SS18-208ENST00000577751 ZBTB1Q9Y2K1 713 aa25.39■■□□□ 1.66
SS18-208ENST00000577751 SNRPA1P09661 255 aaKnown RBP25.38■■□□□ 1.65
SS18-208ENST00000577751 BABAM1Q9NWV8 329 aa25.38■■□□□ 1.65
SS18-208ENST00000577751 RFC4P35249 363 aa25.37■■□□□ 1.65
SS18-208ENST00000577751 USP16Q9Y5T5 823 aa25.37■■□□□ 1.65
SS18-208ENST00000577751 PRAMEF22A3QJZ6 481 aa25.36■■□□□ 1.65
SS18-208ENST00000577751 EIF4A1P60842 406 aaKnown RBP25.36■■□□□ 1.65
SS18-208ENST00000577751 A1BGP04217 495 aa25.34■■□□□ 1.65
SS18-208ENST00000577751 GYS1P13807 737 aa25.34■■□□□ 1.65
SS18-208ENST00000577751 CANXP27824 592 aaKnown RBP25.34■■□□□ 1.65
SS18-208ENST00000577751 EIF5P55010 431 aaKnown RBP25.34■■□□□ 1.65
SS18-208ENST00000577751 FHDC1Q9C0D6 1143 aaPredicted RBP25.34■■□□□ 1.65
SS18-208ENST00000577751 COL15A1P39059 1388 aa25.33■■□□□ 1.65
SS18-208ENST00000577751 TSPYL4Q9UJ04 414 aa25.33■■□□□ 1.65
SS18-208ENST00000577751 LAMB4A4D0S4 1761 aa25.33■■□□□ 1.65
SS18-208ENST00000577751 USP42Q9H9J4 1324 aaKnown RBP25.33■■□□□ 1.64
SS18-208ENST00000577751 CHL1O00533 1208 aa25.32■■□□□ 1.64
SS18-208ENST00000577751 GIGYF1O75420 1035 aaPredicted RBP25.32■■□□□ 1.64
SS18-208ENST00000577751 NLGN1Q8N2Q7 840 aa25.32■■□□□ 1.64
SS18-208ENST00000577751 SYT17Q9BSW7 474 aa25.32■■□□□ 1.64
SS18-208ENST00000577751 IL6STP40189 918 aaPredicted RBP25.31■■□□□ 1.64
SS18-208ENST00000577751 SRP68Q9UHB9 627 aaKnown RBP25.31■■□□□ 1.64
SS18-208ENST00000577751 NARFQ9UHQ1 456 aa25.3■■□□□ 1.64
SS18-208ENST00000577751 NCBP3Q53F19 620 aaKnown RBP25.28■■□□□ 1.64
SS18-208ENST00000577751 A0A087WZG4 1122 aa25.27■■□□□ 1.64
SS18-208ENST00000577751 ZPR1O75312 459 aa25.27■■□□□ 1.64
SS18-208ENST00000577751 CCDC27Q2M243 656 aa25.27■■□□□ 1.64
SS18-208ENST00000577751 USPL1Q5W0Q7 1092 aa25.27■■□□□ 1.64
SS18-208ENST00000577751 CFAP44Q96MT7 982 aa25.27■■□□□ 1.64
SS18-208ENST00000577751 MMP10P09238 476 aa25.26■■□□□ 1.63
SS18-208ENST00000577751 ZNF853P0CG23 659 aa25.26■■□□□ 1.63
SS18-208ENST00000577751 FKBP8Q14318 412 aa25.26■■□□□ 1.63
SS18-208ENST00000577751 NBPF26B4DH59 902 aa25.25■■□□□ 1.63
SS18-208ENST00000577751 NBPF10Q6P3W6 841 aaKnown RBP25.25■■□□□ 1.63
SS18-208ENST00000577751 FAM9BQ8IZU0 186 aa25.25■■□□□ 1.63
SS18-208ENST00000577751 NBPF15Q8N660 670 aa25.25■■□□□ 1.63
SS18-208ENST00000577751 PIP4K2AP48426 406 aaPredicted RBP25.24■■□□□ 1.63
SS18-208ENST00000577751 CALD1Q05682 793 aaKnown RBP25.24■■□□□ 1.63
SS18-208ENST00000577751 BCL2L12Q9HB09 334 aa25.24■■□□□ 1.63
SS18-208ENST00000577751 LAS1LQ9Y4W2 734 aaKnown RBP25.24■■□□□ 1.63
SS18-208ENST00000577751 TM4SF1P30408 202 aa25.23■■□□□ 1.63
SS18-208ENST00000577751 IFT57Q9NWB7 429 aa25.22■■□□□ 1.63
SS18-208ENST00000577751 CD2APQ9Y5K6 639 aa25.22■■□□□ 1.63
SS18-208ENST00000577751 SCN7AQ01118 1682 aa25.22■■□□□ 1.63
SS18-208ENST00000577751 WWC1Q8IX03 1113 aa25.21■■□□□ 1.63
SS18-208ENST00000577751 KLHL34Q8N239 644 aa25.21■■□□□ 1.63
SS18-208ENST00000577751 TBC1D2BQ9UPU7 963 aa25.21■■□□□ 1.63
SS18-208ENST00000577751 ZNF330Q9Y3S2 320 aaPredicted RBP25.21■■□□□ 1.63
SS18-208ENST00000577751 CCER2I3L3R5 266 aa25.2■■□□□ 1.62
SS18-208ENST00000577751 GNAI1P63096 354 aa25.2■■□□□ 1.62
SS18-208ENST00000577751 MBIPQ9NS73 344 aa25.2■■□□□ 1.62
SS18-208ENST00000577751 KIF13BQ9NQT8 1826 aa25.19■■□□□ 1.62
SS18-208ENST00000577751 BCORQ6W2J9 1755 aa25.19■■□□□ 1.62
SS18-208ENST00000577751 SENP3-EIF4A1A0A087X0R7 540 aa25.19■■□□□ 1.62
SS18-208ENST00000577751 NPM2Q86SE8 214 aaKnown RBP25.19■■□□□ 1.62
SS18-208ENST00000577751 NLGN2Q8NFZ4 835 aa25.19■■□□□ 1.62
SS18-208ENST00000577751 PARP3Q9Y6F1 533 aa25.19■■□□□ 1.62
SS18-208ENST00000577751 ERBB4Q15303 1308 aa25.18■■□□□ 1.62
SS18-208ENST00000577751 CAMTA2O94983 1202 aa25.18■■□□□ 1.62
SS18-208ENST00000577751 DDR1Q08345 913 aa25.18■■□□□ 1.62
SS18-208ENST00000577751 KRT24Q2M2I5 525 aa25.18■■□□□ 1.62
SS18-208ENST00000577751 DZIP3Q86Y13 1208 aaKnown RBP25.18■■□□□ 1.62
SS18-208ENST00000577751 NFIXQ14938 502 aa25.17■■□□□ 1.62
SS18-208ENST00000577751 DIEXFQ68CQ4 756 aaKnown RBP25.17■■□□□ 1.62
SS18-208ENST00000577751 POLRMTO00411 1230 aaKnown RBP25.16■■□□□ 1.62
SS18-208ENST00000577751 HOXB7P09629 217 aa25.15■■□□□ 1.62
SS18-208ENST00000577751 PDIA6Q15084 440 aa25.15■■□□□ 1.62
SS18-208ENST00000577751 NRXN2Q9P2S2 1712 aa25.15■■□□□ 1.62
SS18-208ENST00000577751 C10orf71Q711Q0 1435 aa25.14■■□□□ 1.62
SS18-208ENST00000577751 RGL2O15211 777 aa25.14■■□□□ 1.62
SS18-208ENST00000577751 EIF2S2P20042 333 aaKnown RBP25.14■■□□□ 1.62
SS18-208ENST00000577751 AFDNP55196 1824 aaKnown RBP25.14■■□□□ 1.61
SS18-208ENST00000577751 IL16Q14005 1332 aa25.13■■□□□ 1.61
SS18-208ENST00000577751 CLEC4GQ6UXB4 293 aa25.13■■□□□ 1.61
SS18-208ENST00000577751 LRP10Q7Z4F1 713 aa25.13■■□□□ 1.61
SS18-208ENST00000577751 NGEFQ8N5V2 710 aa25.13■■□□□ 1.61
SS18-208ENST00000577751 TBC1D9BQ66K14 1250 aa25.12■■□□□ 1.61
SS18-208ENST00000577751 KIAA1551Q9HCM1 1747 aa25.12■■□□□ 1.61
SS18-208ENST00000577751 MYL6BP14649 208 aa25.11■■□□□ 1.61
SS18-208ENST00000577751 DUSP27Q5VZP5 1158 aa25.11■■□□□ 1.61
SS18-208ENST00000577751 WDR63Q8IWG1 891 aa25.11■■□□□ 1.61
SS18-208ENST00000577751 SALL2Q9Y467 1007 aaPredicted RBP25.11■■□□□ 1.61
SS18-208ENST00000577751 DCAF8L1A6NGE4 600 aa25.09■■□□□ 1.61
SS18-208ENST00000577751 SERPINB2P05120 415 aa25.09■■□□□ 1.61
SS18-208ENST00000577751 TGFB2P61812 414 aa25.09■■□□□ 1.61
SS18-208ENST00000577751 ERVV-1B6SEH8 477 aa25.08■■□□□ 1.61
SS18-208ENST00000577751 PROSER3Q2NL68 480 aa25.08■■□□□ 1.61
SS18-208ENST00000577751 BICDL1Q6ZP65 573 aa25.08■■□□□ 1.61
SS18-208ENST00000577751 TTLL7Q6ZT98 887 aa25.08■■□□□ 1.61
SS18-208ENST00000577751 NECTIN2Q92692 538 aa25.08■■□□□ 1.61
SS18-208ENST00000577751 DDX21Q9NR30 783 aaKnown RBP eCLIP25.08■■□□□ 1.61
SS18-208ENST00000577751 ZNF652Q9Y2D9 606 aa25.08■■□□□ 1.61
SS18-208ENST00000577751 HDGFL1Q5TGJ6 251 aa25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms