RNA–Protein interactions for RNA: ENST00000571886.1

GTF3C1-213, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 721 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-213ENST00000571886 PNNQ9H307 717 aaKnown RBP13.55□□□□□ -0.24
GTF3C1-213ENST00000571886 USP16Q9Y5T5 823 aa13.55□□□□□ -0.24
GTF3C1-213ENST00000571886 SOS1Q07889 1333 aaPredicted RBP13.55□□□□□ -0.24
GTF3C1-213ENST00000571886 MAPK8IP3Q9UPT6 1336 aa13.55□□□□□ -0.24
GTF3C1-213ENST00000571886 A1BGP04217 495 aa13.54□□□□□ -0.24
GTF3C1-213ENST00000571886 ADRA2BP18089 450 aa13.54□□□□□ -0.24
GTF3C1-213ENST00000571886 CANXP27824 592 aaKnown RBP13.54□□□□□ -0.24
GTF3C1-213ENST00000571886 WDR43Q15061 677 aaKnown RBP eCLIP13.54□□□□□ -0.24
GTF3C1-213ENST00000571886 NEUROD2Q15784 382 aa13.54□□□□□ -0.24
GTF3C1-213ENST00000571886 MMP10P09238 476 aa13.53□□□□□ -0.24
GTF3C1-213ENST00000571886 FKBP8Q14318 412 aa13.53□□□□□ -0.24
GTF3C1-213ENST00000571886 RUNDC1Q96C34 613 aa13.53□□□□□ -0.24
GTF3C1-213ENST00000571886 PIP4K2AP48426 406 aaPredicted RBP13.52□□□□□ -0.25
GTF3C1-213ENST00000571886 TRIM35Q9UPQ4 493 aa13.52□□□□□ -0.25
GTF3C1-213ENST00000571886 USP42Q9H9J4 1324 aaKnown RBP13.52□□□□□ -0.25
GTF3C1-213ENST00000571886 KDM3BQ7LBC6 1761 aa13.52□□□□□ -0.25
GTF3C1-213ENST00000571886 STARD3NLO95772 234 aa13.51□□□□□ -0.25
GTF3C1-213ENST00000571886 EIF5P55010 431 aaKnown RBP13.51□□□□□ -0.25
GTF3C1-213ENST00000571886 USPL1Q5W0Q7 1092 aa13.51□□□□□ -0.25
GTF3C1-213ENST00000571886 NLGN1Q8N2Q7 840 aa13.51□□□□□ -0.25
GTF3C1-213ENST00000571886 BCL2L12Q9HB09 334 aa13.51□□□□□ -0.25
GTF3C1-213ENST00000571886 COL15A1P39059 1388 aa13.5□□□□□ -0.25
GTF3C1-213ENST00000571886 SNRPA1P09661 255 aaKnown RBP13.5□□□□□ -0.25
GTF3C1-213ENST00000571886 TEX13AQ9BXU3 409 aaPredicted RBP13.5□□□□□ -0.25
GTF3C1-213ENST00000571886 SENP3-EIF4A1A0A087X0R7 540 aa13.49□□□□□ -0.25
GTF3C1-213ENST00000571886 ANP32CO43423 234 aa13.49□□□□□ -0.25
GTF3C1-213ENST00000571886 TM4SF1P30408 202 aa13.49□□□□□ -0.25
GTF3C1-213ENST00000571886 EIF4A1P60842 406 aaKnown RBP13.49□□□□□ -0.25
GTF3C1-213ENST00000571886 DDR1Q08345 913 aa13.49□□□□□ -0.25
GTF3C1-213ENST00000571886 NARFQ9UHQ1 456 aa13.49□□□□□ -0.25
GTF3C1-213ENST00000571886 CD2APQ9Y5K6 639 aa13.49□□□□□ -0.25
GTF3C1-213ENST00000571886 NBPF26B4DH59 902 aa13.48□□□□□ -0.25
GTF3C1-213ENST00000571886 APAF1O14727 1248 aa13.48□□□□□ -0.25
GTF3C1-213ENST00000571886 ZPR1O75312 459 aa13.48□□□□□ -0.25
GTF3C1-213ENST00000571886 NBPF10Q6P3W6 841 aaKnown RBP13.48□□□□□ -0.25
GTF3C1-213ENST00000571886 NBPF15Q8N660 670 aa13.48□□□□□ -0.25
GTF3C1-213ENST00000571886 PNISRQ8TF01 805 aaKnown RBP13.48□□□□□ -0.25
GTF3C1-213ENST00000571886 TBC1D2BQ9UPU7 963 aa13.48□□□□□ -0.25
GTF3C1-213ENST00000571886 GIGYF1O75420 1035 aaPredicted RBP13.47□□□□□ -0.25
GTF3C1-213ENST00000571886 WWC3Q9ULE0 1092 aa13.47□□□□□ -0.25
GTF3C1-213ENST00000571886 ZNF330Q9Y3S2 320 aaPredicted RBP13.47□□□□□ -0.25
GTF3C1-213ENST00000571886 KIF13BQ9NQT8 1826 aa13.46□□□□□ -0.25
GTF3C1-213ENST00000571886 POLRMTO00411 1230 aaKnown RBP13.46□□□□□ -0.25
GTF3C1-213ENST00000571886 YBX3P16989 372 aaKnown RBP eCLIP13.46□□□□□ -0.252e-8■■■■□ 24.8
GTF3C1-213ENST00000571886 IL6STP40189 918 aaPredicted RBP13.46□□□□□ -0.25
GTF3C1-213ENST00000571886 NFIXQ14938 502 aa13.46□□□□□ -0.25
GTF3C1-213ENST00000571886 PELP1Q8IZL8 1130 aaKnown RBP13.46□□□□□ -0.25
GTF3C1-213ENST00000571886 TSPYL4Q9UJ04 414 aa13.46□□□□□ -0.25
GTF3C1-213ENST00000571886 N4BP2Q86UW6 1770 aaPredicted RBP13.45□□□□□ -0.26
GTF3C1-213ENST00000571886 KIAA1551Q9HCM1 1747 aa13.45□□□□□ -0.26
GTF3C1-213ENST00000571886 GPR162Q16538 588 aa13.45□□□□□ -0.26
GTF3C1-213ENST00000571886 KRT24Q2M2I5 525 aa13.45□□□□□ -0.26
GTF3C1-213ENST00000571886 MRS2Q9HD23 443 aa13.45□□□□□ -0.26
GTF3C1-213ENST00000571886 PARP3Q9Y6F1 533 aa13.45□□□□□ -0.26
GTF3C1-213ENST00000571886 AFDNP55196 1824 aaKnown RBP13.45□□□□□ -0.26
GTF3C1-213ENST00000571886 DCAF8L1A6NGE4 600 aa13.44□□□□□ -0.26
GTF3C1-213ENST00000571886 CHL1O00533 1208 aa13.44□□□□□ -0.26
GTF3C1-213ENST00000571886 CAMTA2O94983 1202 aa13.44□□□□□ -0.26
GTF3C1-213ENST00000571886 LMOD3Q0VAK6 560 aa13.44□□□□□ -0.26
GTF3C1-213ENST00000571886 TBC1D9BQ66K14 1250 aa13.44□□□□□ -0.26
GTF3C1-213ENST00000571886 BICDL1Q6ZP65 573 aa13.44□□□□□ -0.26
GTF3C1-213ENST00000571886 LAS1LQ9Y4W2 734 aaKnown RBP13.44□□□□□ -0.26
GTF3C1-213ENST00000571886 LAMB4A4D0S4 1761 aa13.43□□□□□ -0.26
GTF3C1-213ENST00000571886 A0A087WZG4 1122 aa13.43□□□□□ -0.26
GTF3C1-213ENST00000571886 A0A0G2JLW4 131 aa13.43□□□□□ -0.26
GTF3C1-213ENST00000571886 C10orf71Q711Q0 1435 aa13.43□□□□□ -0.26
GTF3C1-213ENST00000571886 DZIP3Q86Y13 1208 aaKnown RBP13.43□□□□□ -0.26
GTF3C1-213ENST00000571886 SERPINB2P05120 415 aa13.42□□□□□ -0.26
GTF3C1-213ENST00000571886 DPEP1P16444 411 aa13.42□□□□□ -0.26
GTF3C1-213ENST00000571886 KCNA3P22001 575 aa13.42□□□□□ -0.26
GTF3C1-213ENST00000571886 NGEFQ8N5V2 710 aa13.42□□□□□ -0.26
GTF3C1-213ENST00000571886 PXDNLA1KZ92 1463 aa13.42□□□□□ -0.26
GTF3C1-213ENST00000571886 UTRNP46939 3433 aa13.41□□□□□ -0.26
GTF3C1-213ENST00000571886 SCN7AQ01118 1682 aa13.41□□□□□ -0.26
GTF3C1-213ENST00000571886 BCORQ6W2J9 1755 aa13.41□□□□□ -0.26
GTF3C1-213ENST00000571886 EIF2S2P20042 333 aaKnown RBP13.41□□□□□ -0.26
GTF3C1-213ENST00000571886 BABAM1Q9NWV8 329 aa13.41□□□□□ -0.26
GTF3C1-213ENST00000571886 NRXN2Q9P2S2 1712 aa13.41□□□□□ -0.26
GTF3C1-213ENST00000571886 ANXA1P04083 346 aa13.4□□□□□ -0.26
GTF3C1-213ENST00000571886 ZNF853P0CG23 659 aa13.4□□□□□ -0.26
GTF3C1-213ENST00000571886 MYL6BP14649 208 aa13.4□□□□□ -0.26
GTF3C1-213ENST00000571886 TGFB2P61812 414 aa13.4□□□□□ -0.26
GTF3C1-213ENST00000571886 PDIA6Q15084 440 aa13.4□□□□□ -0.26
GTF3C1-213ENST00000571886 HLFQ16534 295 aa13.4□□□□□ -0.26
GTF3C1-213ENST00000571886 TTLL7Q6ZT98 887 aa13.4□□□□□ -0.26
GTF3C1-213ENST00000571886 CCDC24Q8N4L8 307 aa13.4□□□□□ -0.26
GTF3C1-213ENST00000571886 NECTIN2Q92692 538 aa13.4□□□□□ -0.26
GTF3C1-213ENST00000571886 CHD4Q14839 1912 aa13.4□□□□□ -0.26
GTF3C1-213ENST00000571886 YY1P25490 414 aa13.39□□□□□ -0.27
GTF3C1-213ENST00000571886 CHRNA5P30532 468 aa13.39□□□□□ -0.27
GTF3C1-213ENST00000571886 PROSER3Q2NL68 480 aa13.39□□□□□ -0.27
GTF3C1-213ENST00000571886 LRP10Q7Z4F1 713 aa13.39□□□□□ -0.27
GTF3C1-213ENST00000571886 CFAP44Q96MT7 982 aa13.39□□□□□ -0.27
GTF3C1-213ENST00000571886 MBIPQ9NS73 344 aa13.39□□□□□ -0.27
GTF3C1-213ENST00000571886 BRCA1P38398 1863 aaKnown RBP13.39□□□□□ -0.27
GTF3C1-213ENST00000571886 GOLGB1Q14789 3259 aaKnown RBP13.38□□□□□ -0.27
GTF3C1-213ENST00000571886 CARMIL3Q8ND23 1372 aa13.38□□□□□ -0.27
GTF3C1-213ENST00000571886 NPM2Q86SE8 214 aaKnown RBP13.38□□□□□ -0.27
GTF3C1-213ENST00000571886 NUP98P52948 1817 aa13.37□□□□□ -0.27
GTF3C1-213ENST00000571886 FAM9BQ8IZU0 186 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 134.3 ms