RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.57■■■□□ 2.16
CLN3-234ENST00000568472 TRAPPC3LQ5T215 181 aa28.57■■■□□ 2.16
CLN3-234ENST00000568472 SENP3-EIF4A1A0A087X0R7 540 aa28.56■■■□□ 2.16
CLN3-234ENST00000568472 COL5A3P25940 1745 aaPredicted RBP28.56■■■□□ 2.16
CLN3-234ENST00000568472 MBIPQ9NS73 344 aa28.56■■■□□ 2.16
CLN3-234ENST00000568472 USP16Q9Y5T5 823 aa28.56■■■□□ 2.16
CLN3-234ENST00000568472 COL23A1Q86Y22 540 aaPredicted RBP28.55■■■□□ 2.16
CLN3-234ENST00000568472 MSH5O43196 834 aa28.54■■■□□ 2.16
CLN3-234ENST00000568472 QSER1Q2KHR3 1735 aa28.54■■■□□ 2.16
CLN3-234ENST00000568472 HOXB7P09629 217 aa28.53■■■□□ 2.16
CLN3-234ENST00000568472 MTFR1LQ9H019 292 aa28.53■■■□□ 2.16
CLN3-234ENST00000568472 PHF14O94880 888 aa28.52■■■□□ 2.16
CLN3-234ENST00000568472 PRAMEF22A3QJZ6 481 aa28.51■■■□□ 2.15
CLN3-234ENST00000568472 IL6STP40189 918 aaPredicted RBP28.51■■■□□ 2.15
CLN3-234ENST00000568472 NPM2Q86SE8 214 aaKnown RBP28.51■■■□□ 2.15
CLN3-234ENST00000568472 CHMP4AQ9BY43 222 aa28.51■■■□□ 2.15
CLN3-234ENST00000568472 PDGFDQ9GZP0 370 aaPredicted RBP28.51■■■□□ 2.15
CLN3-234ENST00000568472 ZBTB1Q9Y2K1 713 aa28.51■■■□□ 2.15
CLN3-234ENST00000568472 SOS1Q07889 1333 aaPredicted RBP28.5■■■□□ 2.15
CLN3-234ENST00000568472 ZNF521Q96K83 1311 aa28.5■■■□□ 2.15
CLN3-234ENST00000568472 CANXP27824 592 aaKnown RBP28.5■■■□□ 2.15
CLN3-234ENST00000568472 RFC4P35249 363 aa28.5■■■□□ 2.15
CLN3-234ENST00000568472 AMIGO3Q86WK7 504 aa28.5■■■□□ 2.15
CLN3-234ENST00000568472 ARHGEF1Q92888 912 aaKnown RBP28.5■■■□□ 2.15
CLN3-234ENST00000568472 SPON1Q9HCB6 807 aa28.5■■■□□ 2.15
CLN3-234ENST00000568472 A0A087WZG4 1122 aa28.49■■■□□ 2.15
CLN3-234ENST00000568472 A1BGP04217 495 aa28.49■■■□□ 2.15
CLN3-234ENST00000568472 MYH16Q9H6N6 1097 aa28.49■■■□□ 2.15
CLN3-234ENST00000568472 ERBB4Q15303 1308 aa28.48■■■□□ 2.15
CLN3-234ENST00000568472 EIF5P55010 431 aaKnown RBP28.48■■■□□ 2.15
CLN3-234ENST00000568472 CASZ1Q86V15 1759 aa28.47■■■□□ 2.15
CLN3-234ENST00000568472 UBR3Q6ZT12 1888 aa28.47■■■□□ 2.15
CLN3-234ENST00000568472 ZBTB7AO95365 584 aa28.47■■■□□ 2.15
CLN3-234ENST00000568472 MYH14Q7Z406 1995 aaKnown RBP28.45■■■□□ 2.14
CLN3-234ENST00000568472 GOLGA2Q08379 1002 aa28.45■■■□□ 2.14
CLN3-234ENST00000568472 DUSP27Q5VZP5 1158 aa28.44■■■□□ 2.14
CLN3-234ENST00000568472 SMIM5Q71RC9 77 aa28.44■■■□□ 2.14
CLN3-234ENST00000568472 COL15A1P39059 1388 aa28.43■■■□□ 2.14
CLN3-234ENST00000568472 ZPR1O75312 459 aa28.43■■■□□ 2.14
CLN3-234ENST00000568472 TSR2Q969E8 191 aaKnown RBP28.43■■■□□ 2.14
CLN3-234ENST00000568472 TUBGCP6Q96RT7 1819 aa28.43■■■□□ 2.14
CLN3-234ENST00000568472 EIF2S2P20042 333 aaKnown RBP28.42■■■□□ 2.14
CLN3-234ENST00000568472 KRT24Q2M2I5 525 aa28.42■■■□□ 2.14
CLN3-234ENST00000568472 NLGN1Q8N2Q7 840 aa28.42■■■□□ 2.14
CLN3-234ENST00000568472 NBPF26B4DH59 902 aa28.41■■■□□ 2.14
CLN3-234ENST00000568472 E9PSI1 815 aa28.41■■■□□ 2.14
CLN3-234ENST00000568472 NBPF10Q6P3W6 841 aaKnown RBP28.41■■■□□ 2.14
CLN3-234ENST00000568472 NBPF15Q8N660 670 aa28.41■■■□□ 2.14
CLN3-234ENST00000568472 NARFQ9UHQ1 456 aa28.41■■■□□ 2.14
CLN3-234ENST00000568472 ATF5Q9Y2D1 282 aaPredicted RBP28.41■■■□□ 2.14
CLN3-234ENST00000568472 USP42Q9H9J4 1324 aaKnown RBP28.41■■■□□ 2.14
CLN3-234ENST00000568472 FANCIQ9NVI1 1328 aa28.41■■■□□ 2.14
CLN3-234ENST00000568472 POLD1P28340 1107 aa28.4■■■□□ 2.14
CLN3-234ENST00000568472 HDGFL1Q5TGJ6 251 aa28.4■■■□□ 2.14
CLN3-234ENST00000568472 C8orf58Q8NAV2 365 aa28.39■■■□□ 2.14
CLN3-234ENST00000568472 ZNF330Q9Y3S2 320 aaPredicted RBP28.39■■■□□ 2.14
CLN3-234ENST00000568472 LAMB4A4D0S4 1761 aa28.39■■■□□ 2.13
CLN3-234ENST00000568472 RGL2O15211 777 aa28.37■■■□□ 2.13
CLN3-234ENST00000568472 GYS1P13807 737 aa28.37■■■□□ 2.13
CLN3-234ENST00000568472 PTGER2P43116 358 aa28.37■■■□□ 2.13
CLN3-234ENST00000568472 HNRNPUQ00839 825 aaKnown RBP eCLIP28.37■■■□□ 2.13
CLN3-234ENST00000568472 SPINK5Q9NQ38 1064 aaPredicted RBP28.37■■■□□ 2.13
CLN3-234ENST00000568472 DDX21Q9NR30 783 aaKnown RBP eCLIP28.37■■■□□ 2.13
CLN3-234ENST00000568472 ELL2O00472 640 aaPredicted RBP28.36■■■□□ 2.13
CLN3-234ENST00000568472 SGIP1Q9BQI5 828 aa28.36■■■□□ 2.13
CLN3-234ENST00000568472 DBF4Q9UBU7 674 aaPredicted RBP28.36■■■□□ 2.13
CLN3-234ENST00000568472 PIP4K2AP48426 406 aaPredicted RBP28.35■■■□□ 2.13
CLN3-234ENST00000568472 SLFN5Q08AF3 891 aa28.35■■■□□ 2.13
CLN3-234ENST00000568472 TWISTNBQ3B726 338 aaPredicted RBP28.35■■■□□ 2.13
CLN3-234ENST00000568472 CCDC30Q5VVM6 783 aa28.35■■■□□ 2.13
CLN3-234ENST00000568472 DZIP3Q86Y13 1208 aaKnown RBP28.35■■■□□ 2.13
CLN3-234ENST00000568472 SRP68Q9UHB9 627 aaKnown RBP28.35■■■□□ 2.13
CLN3-234ENST00000568472 MYL6BP14649 208 aa28.34■■■□□ 2.13
CLN3-234ENST00000568472 PDIA6Q15084 440 aa28.34■■■□□ 2.13
CLN3-234ENST00000568472 USPL1Q5W0Q7 1092 aa28.34■■■□□ 2.13
CLN3-234ENST00000568472 ARXQ96QS3 562 aa28.34■■■□□ 2.13
CLN3-234ENST00000568472 MSL1Q68DK7 614 aa28.33■■■□□ 2.13
CLN3-234ENST00000568472 TBC1D2BQ9UPU7 963 aa28.33■■■□□ 2.13
CLN3-234ENST00000568472 LRP5O75197 1615 aa28.32■■■□□ 2.12
CLN3-234ENST00000568472 CLEC4GQ6UXB4 293 aa28.32■■■□□ 2.12
CLN3-234ENST00000568472 TSPYL6Q8N831 410 aa28.32■■■□□ 2.12
CLN3-234ENST00000568472 NECTIN2Q92692 538 aa28.32■■■□□ 2.12
CLN3-234ENST00000568472 HYPKQ9NX55 129 aa28.32■■■□□ 2.12
CLN3-234ENST00000568472 EXOSC9Q06265 439 aaKnown RBP28.31■■■□□ 2.12
CLN3-234ENST00000568472 CHPF2Q9P2E5 772 aa28.31■■■□□ 2.12
CLN3-234ENST00000568472 PPP1R1BQ9UD71 204 aaPredicted RBP28.31■■■□□ 2.12
CLN3-234ENST00000568472 ZNF652Q9Y2D9 606 aa28.31■■■□□ 2.12
CLN3-234ENST00000568472 ERVV-1B6SEH8 477 aa28.3■■■□□ 2.12
CLN3-234ENST00000568472 CAMTA2O94983 1202 aa28.3■■■□□ 2.12
CLN3-234ENST00000568472 FKBP8Q14318 412 aa28.3■■■□□ 2.12
CLN3-234ENST00000568472 KIF6Q6ZMV9 814 aa28.3■■■□□ 2.12
CLN3-234ENST00000568472 LRP10Q7Z4F1 713 aa28.29■■■□□ 2.12
CLN3-234ENST00000568472 TRMT2AQ8IZ69 625 aaKnown RBP28.29■■■□□ 2.12
CLN3-234ENST00000568472 STK31Q9BXU1 1019 aa28.28■■■□□ 2.12
CLN3-234ENST00000568472 BCL2L12Q9HB09 334 aa28.28■■■□□ 2.12
CLN3-234ENST00000568472 C4AP0C0L4 1744 aa28.28■■■□□ 2.12
CLN3-234ENST00000568472 COL24A1Q17RW2 1714 aa28.27■■■□□ 2.12
CLN3-234ENST00000568472 VAMP4O75379 141 aa28.27■■■□□ 2.12
CLN3-234ENST00000568472 MMP10P09238 476 aa28.27■■■□□ 2.12
CLN3-234ENST00000568472 PROSER3Q2NL68 480 aa28.27■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 128.2 ms