RNA–Protein interactions for RNA: ENST00000564387.5

USB1-209, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-209ENST00000564387 ARHGEF1Q92888 912 aaKnown RBP22.72■■□□□ 1.23
USB1-209ENST00000564387 CHL1O00533 1208 aa22.71■■□□□ 1.23
USB1-209ENST00000564387 PHF14O94880 888 aa22.71■■□□□ 1.23
USB1-209ENST00000564387 SNRPA1P09661 255 aaKnown RBP22.71■■□□□ 1.23
USB1-209ENST00000564387 EIF4A1P60842 406 aaKnown RBP22.71■■□□□ 1.23
USB1-209ENST00000564387 SOS1Q07889 1333 aaPredicted RBP22.71■■□□□ 1.23
USB1-209ENST00000564387 C4AP0C0L4 1744 aa22.69■■□□□ 1.22
USB1-209ENST00000564387 MSH5O43196 834 aa22.69■■□□□ 1.22
USB1-209ENST00000564387 CCDC27Q2M243 656 aa22.69■■□□□ 1.22
USB1-209ENST00000564387 ZBTB1Q9Y2K1 713 aa22.69■■□□□ 1.22
USB1-209ENST00000564387 USP16Q9Y5T5 823 aa22.69■■□□□ 1.22
USB1-209ENST00000564387 CCER2I3L3R5 266 aa22.68■■□□□ 1.22
USB1-209ENST00000564387 GIGYF1O75420 1035 aaPredicted RBP22.68■■□□□ 1.22
USB1-209ENST00000564387 PRAMEF22A3QJZ6 481 aa22.67■■□□□ 1.22
USB1-209ENST00000564387 ZNF853P0CG23 659 aa22.67■■□□□ 1.22
USB1-209ENST00000564387 EIF5P55010 431 aaKnown RBP22.67■■□□□ 1.22
USB1-209ENST00000564387 TSPYL4Q9UJ04 414 aa22.67■■□□□ 1.22
USB1-209ENST00000564387 CFAP44Q96MT7 982 aa22.66■■□□□ 1.22
USB1-209ENST00000564387 RFC4P35249 363 aa22.65■■□□□ 1.22
USB1-209ENST00000564387 ARXQ96QS3 562 aa22.65■■□□□ 1.22
USB1-209ENST00000564387 USP42Q9H9J4 1324 aaKnown RBP22.64■■□□□ 1.22
USB1-209ENST00000564387 LAMB4A4D0S4 1761 aa22.64■■□□□ 1.22
USB1-209ENST00000564387 A1BGP04217 495 aa22.64■■□□□ 1.21
USB1-209ENST00000564387 GYS1P13807 737 aa22.64■■□□□ 1.21
USB1-209ENST00000564387 POLD1P28340 1107 aa22.64■■□□□ 1.21
USB1-209ENST00000564387 IL6STP40189 918 aaPredicted RBP22.64■■□□□ 1.21
USB1-209ENST00000564387 DIEXFQ68CQ4 756 aaKnown RBP22.64■■□□□ 1.21
USB1-209ENST00000564387 COL15A1P39059 1388 aa22.63■■□□□ 1.21
USB1-209ENST00000564387 CALD1Q05682 793 aaKnown RBP22.63■■□□□ 1.21
USB1-209ENST00000564387 NLGN1Q8N2Q7 840 aa22.63■■□□□ 1.21
USB1-209ENST00000564387 CANXP27824 592 aaKnown RBP22.62■■□□□ 1.21
USB1-209ENST00000564387 MSL1Q68DK7 614 aa22.62■■□□□ 1.21
USB1-209ENST00000564387 WWC1Q8IX03 1113 aa22.62■■□□□ 1.21
USB1-209ENST00000564387 FAM9BQ8IZU0 186 aa22.62■■□□□ 1.21
USB1-209ENST00000564387 IFT57Q9NWB7 429 aa22.62■■□□□ 1.21
USB1-209ENST00000564387 PPP1R1BQ9UD71 204 aaPredicted RBP22.62■■□□□ 1.21
USB1-209ENST00000564387 NARFQ9UHQ1 456 aa22.62■■□□□ 1.21
USB1-209ENST00000564387 NGEFQ8N5V2 710 aa22.61■■□□□ 1.21
USB1-209ENST00000564387 NBPF26B4DH59 902 aa22.6■■□□□ 1.21
USB1-209ENST00000564387 NBPF10Q6P3W6 841 aaKnown RBP22.6■■□□□ 1.21
USB1-209ENST00000564387 NBPF15Q8N660 670 aa22.6■■□□□ 1.21
USB1-209ENST00000564387 A0A087WZG4 1122 aa22.59■■□□□ 1.21
USB1-209ENST00000564387 GNAI1P63096 354 aa22.59■■□□□ 1.21
USB1-209ENST00000564387 SRP68Q9UHB9 627 aaKnown RBP22.59■■□□□ 1.21
USB1-209ENST00000564387 MBIPQ9NS73 344 aa22.58■■□□□ 1.21
USB1-209ENST00000564387 IL16Q14005 1332 aa22.57■■□□□ 1.2
USB1-209ENST00000564387 FHDC1Q9C0D6 1143 aaPredicted RBP22.57■■□□□ 1.2
USB1-209ENST00000564387 BCL2L12Q9HB09 334 aa22.57■■□□□ 1.2
USB1-209ENST00000564387 ERBB4Q15303 1308 aa22.57■■□□□ 1.2
USB1-209ENST00000564387 ZPR1O75312 459 aa22.56■■□□□ 1.2
USB1-209ENST00000564387 HOXB7P09629 217 aa22.56■■□□□ 1.2
USB1-209ENST00000564387 TM4SF1P30408 202 aa22.56■■□□□ 1.2
USB1-209ENST00000564387 FKBP8Q14318 412 aa22.56■■□□□ 1.2
USB1-209ENST00000564387 USPL1Q5W0Q7 1092 aa22.56■■□□□ 1.2
USB1-209ENST00000564387 SYT17Q9BSW7 474 aa22.56■■□□□ 1.2
USB1-209ENST00000564387 LAS1LQ9Y4W2 734 aaKnown RBP22.56■■□□□ 1.2
USB1-209ENST00000564387 MMP10P09238 476 aa22.55■■□□□ 1.2
USB1-209ENST00000564387 RGL2O15211 777 aa22.54■■□□□ 1.2
USB1-209ENST00000564387 WDR63Q8IWG1 891 aa22.54■■□□□ 1.2
USB1-209ENST00000564387 SCN7AQ01118 1682 aa22.54■■□□□ 1.2
USB1-209ENST00000564387 PIP4K2AP48426 406 aaPredicted RBP22.53■■□□□ 1.2
USB1-209ENST00000564387 KRT24Q2M2I5 525 aa22.53■■□□□ 1.2
USB1-209ENST00000564387 LRP10Q7Z4F1 713 aa22.53■■□□□ 1.2
USB1-209ENST00000564387 MIER1Q8N108 512 aa22.53■■□□□ 1.2
USB1-209ENST00000564387 CAMTA2O94983 1202 aa22.52■■□□□ 1.2
USB1-209ENST00000564387 PDIA6Q15084 440 aa22.52■■□□□ 1.2
USB1-209ENST00000564387 TBC1D2BQ9UPU7 963 aa22.52■■□□□ 1.2
USB1-209ENST00000564387 CD2APQ9Y5K6 639 aa22.52■■□□□ 1.2
USB1-209ENST00000564387 BCORQ6W2J9 1755 aa22.51■■□□□ 1.19
USB1-209ENST00000564387 SENP3-EIF4A1A0A087X0R7 540 aa22.51■■□□□ 1.19
USB1-209ENST00000564387 DZIP3Q86Y13 1208 aaKnown RBP22.51■■□□□ 1.19
USB1-209ENST00000564387 ZNF521Q96K83 1311 aa22.51■■□□□ 1.19
USB1-209ENST00000564387 DDR1Q08345 913 aa22.5■■□□□ 1.19
USB1-209ENST00000564387 POLRMTO00411 1230 aaKnown RBP22.49■■□□□ 1.19
USB1-209ENST00000564387 NFIXQ14938 502 aa22.49■■□□□ 1.19
USB1-209ENST00000564387 CLEC4GQ6UXB4 293 aa22.49■■□□□ 1.19
USB1-209ENST00000564387 NPM2Q86SE8 214 aaKnown RBP22.49■■□□□ 1.19
USB1-209ENST00000564387 KIF13BQ9NQT8 1826 aa22.49■■□□□ 1.19
USB1-209ENST00000564387 DUSP27Q5VZP5 1158 aa22.48■■□□□ 1.19
USB1-209ENST00000564387 ZNF330Q9Y3S2 320 aaPredicted RBP22.48■■□□□ 1.19
USB1-209ENST00000564387 NRXN2Q9P2S2 1712 aa22.48■■□□□ 1.19
USB1-209ENST00000564387 EIF2S2P20042 333 aaKnown RBP22.47■■□□□ 1.19
USB1-209ENST00000564387 PARP3Q9Y6F1 533 aa22.47■■□□□ 1.19
USB1-209ENST00000564387 C10orf71Q711Q0 1435 aa22.47■■□□□ 1.19
USB1-209ENST00000564387 ERVV-1B6SEH8 477 aa22.46■■□□□ 1.19
USB1-209ENST00000564387 C8orf58Q8NAV2 365 aa22.46■■□□□ 1.19
USB1-209ENST00000564387 DDX21Q9NR30 783 aaKnown RBP eCLIP22.46■■□□□ 1.19
USB1-209ENST00000564387 PROSER3Q2NL68 480 aa22.45■■□□□ 1.18
USB1-209ENST00000564387 TBC1D9BQ66K14 1250 aa22.45■■□□□ 1.18
USB1-209ENST00000564387 NLGN2Q8NFZ4 835 aa22.45■■□□□ 1.18
USB1-209ENST00000564387 TSR2Q969E8 191 aaKnown RBP22.45■■□□□ 1.18
USB1-209ENST00000564387 SALL2Q9Y467 1007 aaPredicted RBP22.45■■□□□ 1.18
USB1-209ENST00000564387 MYL6BP14649 208 aa22.44■■□□□ 1.18
USB1-209ENST00000564387 HDGFL1Q5TGJ6 251 aa22.44■■□□□ 1.18
USB1-209ENST00000564387 MAP3K15Q6ZN16 1313 aa22.43■■□□□ 1.18
USB1-209ENST00000564387 TTLL7Q6ZT98 887 aa22.43■■□□□ 1.18
USB1-209ENST00000564387 SPINK5Q9NQ38 1064 aaPredicted RBP22.43■■□□□ 1.18
USB1-209ENST00000564387 AFDNP55196 1824 aaKnown RBP22.43■■□□□ 1.18
USB1-209ENST00000564387 FANCIQ9NVI1 1328 aa22.42■■□□□ 1.18
USB1-209ENST00000564387 TSPYL6Q8N831 410 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms