RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 STARD3NLO95772 234 aa21.88■■□□□ 1.09
CLK3-207ENST00000562389 SNRPA1P09661 255 aaKnown RBP21.88■■□□□ 1.09
CLK3-207ENST00000562389 CCDC27Q2M243 656 aa21.88■■□□□ 1.09
CLK3-207ENST00000562389 MSH5O43196 834 aa21.87■■□□□ 1.09
CLK3-207ENST00000562389 EIF4A1P60842 406 aaKnown RBP21.87■■□□□ 1.09
CLK3-207ENST00000562389 SMIM5Q71RC9 77 aa21.87■■□□□ 1.09
CLK3-207ENST00000562389 CHL1O00533 1208 aa21.86■■□□□ 1.09
CLK3-207ENST00000562389 CALD1Q05682 793 aaKnown RBP21.86■■□□□ 1.09
CLK3-207ENST00000562389 ZBTB1Q9Y2K1 713 aa21.86■■□□□ 1.09
CLK3-207ENST00000562389 SOS1Q07889 1333 aaPredicted RBP21.85■■□□□ 1.09
CLK3-207ENST00000562389 TRAPPC3LQ5T215 181 aa21.85■■□□□ 1.09
CLK3-207ENST00000562389 ATF5Q9Y2D1 282 aaPredicted RBP21.85■■□□□ 1.09
CLK3-207ENST00000562389 PRAMEF22A3QJZ6 481 aa21.84■■□□□ 1.09
CLK3-207ENST00000562389 PTGER2P43116 358 aa21.84■■□□□ 1.09
CLK3-207ENST00000562389 MIER1Q8N108 512 aa21.84■■□□□ 1.09
CLK3-207ENST00000562389 CFAP44Q96MT7 982 aa21.84■■□□□ 1.09
CLK3-207ENST00000562389 SGIP1Q9BQI5 828 aa21.84■■□□□ 1.09
CLK3-207ENST00000562389 GIGYF1O75420 1035 aaPredicted RBP21.83■■□□□ 1.09
CLK3-207ENST00000562389 ARHGEF1Q92888 912 aaKnown RBP21.83■■□□□ 1.09
CLK3-207ENST00000562389 IFT57Q9NWB7 429 aa21.83■■□□□ 1.09
CLK3-207ENST00000562389 USP16Q9Y5T5 823 aa21.83■■□□□ 1.09
CLK3-207ENST00000562389 ZNF853P0CG23 659 aa21.82■■□□□ 1.08
CLK3-207ENST00000562389 WWC1Q8IX03 1113 aa21.82■■□□□ 1.08
CLK3-207ENST00000562389 LAS1LQ9Y4W2 734 aaKnown RBP21.82■■□□□ 1.08
CLK3-207ENST00000562389 COL15A1P39059 1388 aa21.82■■□□□ 1.08
CLK3-207ENST00000562389 NGEFQ8N5V2 710 aa21.81■■□□□ 1.08
CLK3-207ENST00000562389 SENP3-EIF4A1A0A087X0R7 540 aa21.8■■□□□ 1.08
CLK3-207ENST00000562389 CANXP27824 592 aaKnown RBP21.8■■□□□ 1.08
CLK3-207ENST00000562389 RFC4P35249 363 aa21.8■■□□□ 1.08
CLK3-207ENST00000562389 GNAI1P63096 354 aa21.8■■□□□ 1.08
CLK3-207ENST00000562389 A1BGP04217 495 aa21.79■■□□□ 1.08
CLK3-207ENST00000562389 IL6STP40189 918 aaPredicted RBP21.79■■□□□ 1.08
CLK3-207ENST00000562389 EIF5P55010 431 aaKnown RBP21.79■■□□□ 1.08
CLK3-207ENST00000562389 MBIPQ9NS73 344 aa21.79■■□□□ 1.08
CLK3-207ENST00000562389 USP42Q9H9J4 1324 aaKnown RBP21.79■■□□□ 1.08
CLK3-207ENST00000562389 POLD1P28340 1107 aa21.78■■□□□ 1.08
CLK3-207ENST00000562389 MSL1Q68DK7 614 aa21.78■■□□□ 1.08
CLK3-207ENST00000562389 IL16Q14005 1332 aa21.78■■□□□ 1.08
CLK3-207ENST00000562389 SCN7AQ01118 1682 aa21.77■■□□□ 1.08
CLK3-207ENST00000562389 A0A087WZG4 1122 aa21.76■■□□□ 1.07
CLK3-207ENST00000562389 GYS1P13807 737 aa21.76■■□□□ 1.07
CLK3-207ENST00000562389 PPP1R1BQ9UD71 204 aaPredicted RBP21.76■■□□□ 1.07
CLK3-207ENST00000562389 BCORQ6W2J9 1755 aa21.75■■□□□ 1.07
CLK3-207ENST00000562389 WDR63Q8IWG1 891 aa21.75■■□□□ 1.07
CLK3-207ENST00000562389 SALL2Q9Y467 1007 aaPredicted RBP21.75■■□□□ 1.07
CLK3-207ENST00000562389 NBPF26B4DH59 902 aa21.74■■□□□ 1.07
CLK3-207ENST00000562389 HOXB7P09629 217 aa21.74■■□□□ 1.07
CLK3-207ENST00000562389 NBPF10Q6P3W6 841 aaKnown RBP21.74■■□□□ 1.07
CLK3-207ENST00000562389 NLGN1Q8N2Q7 840 aa21.74■■□□□ 1.07
CLK3-207ENST00000562389 NBPF15Q8N660 670 aa21.74■■□□□ 1.07
CLK3-207ENST00000562389 SRP68Q9UHB9 627 aaKnown RBP21.74■■□□□ 1.07
CLK3-207ENST00000562389 NARFQ9UHQ1 456 aa21.74■■□□□ 1.07
CLK3-207ENST00000562389 ERBB4Q15303 1308 aa21.74■■□□□ 1.07
CLK3-207ENST00000562389 ZPR1O75312 459 aa21.73■■□□□ 1.07
CLK3-207ENST00000562389 PIP4K2AP48426 406 aaPredicted RBP21.73■■□□□ 1.07
CLK3-207ENST00000562389 KRT24Q2M2I5 525 aa21.73■■□□□ 1.07
CLK3-207ENST00000562389 ARXQ96QS3 562 aa21.73■■□□□ 1.07
CLK3-207ENST00000562389 NPM2Q86SE8 214 aaKnown RBP21.72■■□□□ 1.07
CLK3-207ENST00000562389 ZNF330Q9Y3S2 320 aaPredicted RBP21.72■■□□□ 1.07
CLK3-207ENST00000562389 USPL1Q5W0Q7 1092 aa21.71■■□□□ 1.07
CLK3-207ENST00000562389 ZNF521Q96K83 1311 aa21.71■■□□□ 1.07
CLK3-207ENST00000562389 EIF2S2P20042 333 aaKnown RBP21.69■■□□□ 1.06
CLK3-207ENST00000562389 FKBP8Q14318 412 aa21.69■■□□□ 1.06
CLK3-207ENST00000562389 DUSP27Q5VZP5 1158 aa21.69■■□□□ 1.06
CLK3-207ENST00000562389 BCL2L12Q9HB09 334 aa21.69■■□□□ 1.06
CLK3-207ENST00000562389 SRCAPQ6ZRS2 3230 aa21.68■■□□□ 1.06
CLK3-207ENST00000562389 MMP10P09238 476 aa21.68■■□□□ 1.06
CLK3-207ENST00000562389 DZIP3Q86Y13 1208 aaKnown RBP21.68■■□□□ 1.06
CLK3-207ENST00000562389 TSR2Q969E8 191 aaKnown RBP21.68■■□□□ 1.06
CLK3-207ENST00000562389 TBC1D2BQ9UPU7 963 aa21.68■■□□□ 1.06
CLK3-207ENST00000562389 CAMTA2O94983 1202 aa21.67■■□□□ 1.06
CLK3-207ENST00000562389 FANCIQ9NVI1 1328 aa21.66■■□□□ 1.06
CLK3-207ENST00000562389 PDIA6Q15084 440 aa21.66■■□□□ 1.06
CLK3-207ENST00000562389 HDGFL1Q5TGJ6 251 aa21.66■■□□□ 1.06
CLK3-207ENST00000562389 FHDC1Q9C0D6 1143 aaPredicted RBP21.66■■□□□ 1.06
CLK3-207ENST00000562389 KIF13BQ9NQT8 1826 aa21.65■■□□□ 1.06
CLK3-207ENST00000562389 RGL2O15211 777 aa21.65■■□□□ 1.06
CLK3-207ENST00000562389 MYL6BP14649 208 aa21.65■■□□□ 1.06
CLK3-207ENST00000562389 LRP10Q7Z4F1 713 aa21.65■■□□□ 1.06
CLK3-207ENST00000562389 C8orf58Q8NAV2 365 aa21.65■■□□□ 1.06
CLK3-207ENST00000562389 NRXN2Q9P2S2 1712 aa21.64■■□□□ 1.06
CLK3-207ENST00000562389 TM4SF1P30408 202 aa21.64■■□□□ 1.05
CLK3-207ENST00000562389 NECTIN2Q92692 538 aa21.64■■□□□ 1.05
CLK3-207ENST00000562389 SPINK5Q9NQ38 1064 aaPredicted RBP21.64■■□□□ 1.05
CLK3-207ENST00000562389 PARP3Q9Y6F1 533 aa21.64■■□□□ 1.05
CLK3-207ENST00000562389 AFDNP55196 1824 aaKnown RBP21.64■■□□□ 1.05
CLK3-207ENST00000562389 DDR1Q08345 913 aa21.63■■□□□ 1.05
CLK3-207ENST00000562389 NFIXQ14938 502 aa21.63■■□□□ 1.05
CLK3-207ENST00000562389 PROSER3Q2NL68 480 aa21.63■■□□□ 1.05
CLK3-207ENST00000562389 SYT17Q9BSW7 474 aa21.63■■□□□ 1.05
CLK3-207ENST00000562389 MYH16Q9H6N6 1097 aa21.63■■□□□ 1.05
CLK3-207ENST00000562389 DDX21Q9NR30 783 aaKnown RBP eCLIP21.63■■□□□ 1.05
CLK3-207ENST00000562389 NUP98P52948 1817 aa21.63■■□□□ 1.05
CLK3-207ENST00000562389 POLRMTO00411 1230 aaKnown RBP21.62■■□□□ 1.05
CLK3-207ENST00000562389 ELL2O00472 640 aaPredicted RBP21.62■■□□□ 1.05
CLK3-207ENST00000562389 CLEC4GQ6UXB4 293 aa21.62■■□□□ 1.05
CLK3-207ENST00000562389 TSPYL6Q8N831 410 aa21.62■■□□□ 1.05
CLK3-207ENST00000562389 CHMP4AQ9BY43 222 aa21.62■■□□□ 1.05
CLK3-207ENST00000562389 CHPF2Q9P2E5 772 aa21.62■■□□□ 1.05
CLK3-207ENST00000562389 ANXA1P04083 346 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms