RNA–Protein interactions for RNA: ENST00000558428.5

SMAD3-205, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-205ENST00000558428 SNRPA1P09661 255 aaKnown RBP16.17■□□□□ 0.18
SMAD3-205ENST00000558428 TRAPPC3LQ5T215 181 aa16.17■□□□□ 0.18
SMAD3-205ENST00000558428 ADRA2BP18089 450 aa16.16■□□□□ 0.18
SMAD3-205ENST00000558428 BABAM1Q9NWV8 329 aa16.16■□□□□ 0.18
SMAD3-205ENST00000558428 ZBTB1Q9Y2K1 713 aa16.16■□□□□ 0.18
SMAD3-205ENST00000558428 LAS1LQ9Y4W2 734 aaKnown RBP16.16■□□□□ 0.18
SMAD3-205ENST00000558428 PRAMEF22A3QJZ6 481 aa16.15■□□□□ 0.18
SMAD3-205ENST00000558428 C4AP0C0L4 1744 aa16.15■□□□□ 0.18
SMAD3-205ENST00000558428 EIF4A1P60842 406 aaKnown RBP16.15■□□□□ 0.18
SMAD3-205ENST00000558428 MSL1Q68DK7 614 aa16.15■□□□□ 0.18
SMAD3-205ENST00000558428 ARHGEF1Q92888 912 aaKnown RBP16.15■□□□□ 0.18
SMAD3-205ENST00000558428 PPP1R1BQ9UD71 204 aaPredicted RBP16.15■□□□□ 0.18
SMAD3-205ENST00000558428 USP16Q9Y5T5 823 aa16.15■□□□□ 0.18
SMAD3-205ENST00000558428 COL24A1Q17RW2 1714 aa16.14■□□□□ 0.17
SMAD3-205ENST00000558428 LAMB4A4D0S4 1761 aa16.14■□□□□ 0.17
SMAD3-205ENST00000558428 CANXP27824 592 aaKnown RBP16.14■□□□□ 0.17
SMAD3-205ENST00000558428 RFC4P35249 363 aa16.14■□□□□ 0.17
SMAD3-205ENST00000558428 PTGER2P43116 358 aa16.14■□□□□ 0.17
SMAD3-205ENST00000558428 SOS1Q07889 1333 aaPredicted RBP16.14■□□□□ 0.17
SMAD3-205ENST00000558428 CHL1O00533 1208 aa16.13■□□□□ 0.17
SMAD3-205ENST00000558428 POLD1P28340 1107 aa16.13■□□□□ 0.17
SMAD3-205ENST00000558428 CALD1Q05682 793 aaKnown RBP16.13■□□□□ 0.17
SMAD3-205ENST00000558428 MIER1Q8N108 512 aa16.13■□□□□ 0.17
SMAD3-205ENST00000558428 SGIP1Q9BQI5 828 aa16.13■□□□□ 0.17
SMAD3-205ENST00000558428 COL15A1P39059 1388 aa16.13■□□□□ 0.17
SMAD3-205ENST00000558428 GIGYF1O75420 1035 aaPredicted RBP16.12■□□□□ 0.17
SMAD3-205ENST00000558428 A1BGP04217 495 aa16.12■□□□□ 0.17
SMAD3-205ENST00000558428 CCDC27Q2M243 656 aa16.12■□□□□ 0.17
SMAD3-205ENST00000558428 CFAP44Q96MT7 982 aa16.12■□□□□ 0.17
SMAD3-205ENST00000558428 SALL2Q9Y467 1007 aaPredicted RBP16.12■□□□□ 0.17
SMAD3-205ENST00000558428 ZNF330Q9Y3S2 320 aaPredicted RBP16.11■□□□□ 0.17
SMAD3-205ENST00000558428 PIP4K2AP48426 406 aaPredicted RBP16.1■□□□□ 0.17
SMAD3-205ENST00000558428 EIF5P55010 431 aaKnown RBP16.1■□□□□ 0.17
SMAD3-205ENST00000558428 GNAI1P63096 354 aa16.1■□□□□ 0.17
SMAD3-205ENST00000558428 NCBP3Q53F19 620 aaKnown RBP16.1■□□□□ 0.17
SMAD3-205ENST00000558428 WWC1Q8IX03 1113 aa16.1■□□□□ 0.17
SMAD3-205ENST00000558428 IFT57Q9NWB7 429 aa16.1■□□□□ 0.17
SMAD3-205ENST00000558428 SRP68Q9UHB9 627 aaKnown RBP16.1■□□□□ 0.17
SMAD3-205ENST00000558428 ZPR1O75312 459 aa16.09■□□□□ 0.17
SMAD3-205ENST00000558428 ZNF853P0CG23 659 aa16.09■□□□□ 0.17
SMAD3-205ENST00000558428 IL6STP40189 918 aaPredicted RBP16.09■□□□□ 0.17
SMAD3-205ENST00000558428 NPM2Q86SE8 214 aaKnown RBP16.09■□□□□ 0.17
SMAD3-205ENST00000558428 ARXQ96QS3 562 aa16.09■□□□□ 0.17
SMAD3-205ENST00000558428 MBIPQ9NS73 344 aa16.09■□□□□ 0.17
SMAD3-205ENST00000558428 USP42Q9H9J4 1324 aaKnown RBP16.09■□□□□ 0.17
SMAD3-205ENST00000558428 A0A087WZG4 1122 aa16.08■□□□□ 0.16
SMAD3-205ENST00000558428 GYS1P13807 737 aa16.08■□□□□ 0.16
SMAD3-205ENST00000558428 KRT24Q2M2I5 525 aa16.07■□□□□ 0.16
SMAD3-205ENST00000558428 USPL1Q5W0Q7 1092 aa16.07■□□□□ 0.16
SMAD3-205ENST00000558428 NLGN1Q8N2Q7 840 aa16.07■□□□□ 0.16
SMAD3-205ENST00000558428 NARFQ9UHQ1 456 aa16.07■□□□□ 0.16
SMAD3-205ENST00000558428 NBPF26B4DH59 902 aa16.06■□□□□ 0.16
SMAD3-205ENST00000558428 EIF2S2P20042 333 aaKnown RBP16.06■□□□□ 0.16
SMAD3-205ENST00000558428 NBPF10Q6P3W6 841 aaKnown RBP16.06■□□□□ 0.16
SMAD3-205ENST00000558428 NGEFQ8N5V2 710 aa16.06■□□□□ 0.16
SMAD3-205ENST00000558428 NBPF15Q8N660 670 aa16.06■□□□□ 0.16
SMAD3-205ENST00000558428 MMP10P09238 476 aa16.05■□□□□ 0.16
SMAD3-205ENST00000558428 FKBP8Q14318 412 aa16.05■□□□□ 0.16
SMAD3-205ENST00000558428 KLHL34Q8N239 644 aa16.05■□□□□ 0.16
SMAD3-205ENST00000558428 FHDC1Q9C0D6 1143 aaPredicted RBP16.05■□□□□ 0.16
SMAD3-205ENST00000558428 TBC1D2BQ9UPU7 963 aa16.05■□□□□ 0.16
SMAD3-205ENST00000558428 IL16Q14005 1332 aa16.04■□□□□ 0.16
SMAD3-205ENST00000558428 DZIP3Q86Y13 1208 aaKnown RBP16.04■□□□□ 0.16
SMAD3-205ENST00000558428 WDR63Q8IWG1 891 aa16.04■□□□□ 0.16
SMAD3-205ENST00000558428 SCN7AQ01118 1682 aa16.04■□□□□ 0.16
SMAD3-205ENST00000558428 ERBB4Q15303 1308 aa16.03■□□□□ 0.16
SMAD3-205ENST00000558428 HOXB7P09629 217 aa16.03■□□□□ 0.16
SMAD3-205ENST00000558428 MYL6BP14649 208 aa16.03■□□□□ 0.16
SMAD3-205ENST00000558428 DUSP27Q5VZP5 1158 aa16.03■□□□□ 0.16
SMAD3-205ENST00000558428 NECTIN2Q92692 538 aa16.03■□□□□ 0.16
SMAD3-205ENST00000558428 TSR2Q969E8 191 aaKnown RBP16.03■□□□□ 0.16
SMAD3-205ENST00000558428 BCORQ6W2J9 1755 aa16.03■□□□□ 0.16
SMAD3-205ENST00000558428 BCL2L12Q9HB09 334 aa16.02■□□□□ 0.16
SMAD3-205ENST00000558428 ELL2O00472 640 aaPredicted RBP16.01■□□□□ 0.15
SMAD3-205ENST00000558428 CAMTA2O94983 1202 aa16.01■□□□□ 0.15
SMAD3-205ENST00000558428 HDGFL1Q5TGJ6 251 aa16.01■□□□□ 0.15
SMAD3-205ENST00000558428 SYT17Q9BSW7 474 aa16.01■□□□□ 0.15
SMAD3-205ENST00000558428 PARP3Q9Y6F1 533 aa16.01■□□□□ 0.15
SMAD3-205ENST00000558428 PDIA6Q15084 440 aa16■□□□□ 0.15
SMAD3-205ENST00000558428 C8orf58Q8NAV2 365 aa16■□□□□ 0.15
SMAD3-205ENST00000558428 ANXA1P04083 346 aa15.99■□□□□ 0.15
SMAD3-205ENST00000558428 TM4SF1P30408 202 aa15.99■□□□□ 0.15
SMAD3-205ENST00000558428 DDR1Q08345 913 aa15.99■□□□□ 0.15
SMAD3-205ENST00000558428 NFIXQ14938 502 aa15.99■□□□□ 0.15
SMAD3-205ENST00000558428 PROSER3Q2NL68 480 aa15.99■□□□□ 0.15
SMAD3-205ENST00000558428 BICDL1Q6ZP65 573 aa15.99■□□□□ 0.15
SMAD3-205ENST00000558428 ZNF521Q96K83 1311 aa15.98■□□□□ 0.15
SMAD3-205ENST00000558428 FANCIQ9NVI1 1328 aa15.98■□□□□ 0.15
SMAD3-205ENST00000558428 POLRMTO00411 1230 aaKnown RBP15.98■□□□□ 0.15
SMAD3-205ENST00000558428 TBC1D9BQ66K14 1250 aa15.98■□□□□ 0.15
SMAD3-205ENST00000558428 KIF6Q6ZMV9 814 aa15.98■□□□□ 0.15
SMAD3-205ENST00000558428 SPINK5Q9NQ38 1064 aaPredicted RBP15.98■□□□□ 0.15
SMAD3-205ENST00000558428 DDX21Q9NR30 783 aaKnown RBP eCLIP15.98■□□□□ 0.15
SMAD3-205ENST00000558428 CHPF2Q9P2E5 772 aa15.98■□□□□ 0.15
SMAD3-205ENST00000558428 ZNF652Q9Y2D9 606 aa15.98■□□□□ 0.15
SMAD3-205ENST00000558428 AFDNP55196 1824 aaKnown RBP15.98■□□□□ 0.15
SMAD3-205ENST00000558428 NUP98P52948 1817 aa15.97■□□□□ 0.15
SMAD3-205ENST00000558428 CLEC4GQ6UXB4 293 aa15.97■□□□□ 0.15
SMAD3-205ENST00000558428 TTLL7Q6ZT98 887 aa15.97■□□□□ 0.15
SMAD3-205ENST00000558428 LRP10Q7Z4F1 713 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms