RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 TEX13AQ9BXU3 409 aaPredicted RBP18.63■□□□□ 0.57
SHMT2-217ENST00000555116 BABAM1Q9NWV8 329 aa18.63■□□□□ 0.57
SHMT2-217ENST00000555116 CCER2I3L3R5 266 aa18.63■□□□□ 0.57
SHMT2-217ENST00000555116 ADRA2BP18089 450 aa18.63■□□□□ 0.57
SHMT2-217ENST00000555116 PRAMEF22A3QJZ6 481 aa18.62■□□□□ 0.57
SHMT2-217ENST00000555116 STARD3NLO95772 234 aa18.62■□□□□ 0.57
SHMT2-217ENST00000555116 SNRPA1P09661 255 aaKnown RBP18.62■□□□□ 0.57
SHMT2-217ENST00000555116 EIF4A1P60842 406 aaKnown RBP18.62■□□□□ 0.57
SHMT2-217ENST00000555116 TRAPPC3LQ5T215 181 aa18.61■□□□□ 0.57
SHMT2-217ENST00000555116 ARHGEF1Q92888 912 aaKnown RBP18.61■□□□□ 0.57
SHMT2-217ENST00000555116 TSPYL4Q9UJ04 414 aa18.61■□□□□ 0.57
SHMT2-217ENST00000555116 ZBTB1Q9Y2K1 713 aa18.61■□□□□ 0.57
SHMT2-217ENST00000555116 USP16Q9Y5T5 823 aa18.61■□□□□ 0.57
SHMT2-217ENST00000555116 SOS1Q07889 1333 aaPredicted RBP18.61■□□□□ 0.57
SHMT2-217ENST00000555116 CHL1O00533 1208 aa18.6■□□□□ 0.57
SHMT2-217ENST00000555116 SRCAPQ6ZRS2 3230 aa18.6■□□□□ 0.57
SHMT2-217ENST00000555116 SENP3-EIF4A1A0A087X0R7 540 aa18.6■□□□□ 0.57
SHMT2-217ENST00000555116 GIGYF1O75420 1035 aaPredicted RBP18.58■□□□□ 0.57
SHMT2-217ENST00000555116 A1BGP04217 495 aa18.58■□□□□ 0.57
SHMT2-217ENST00000555116 CCDC27Q2M243 656 aa18.58■□□□□ 0.57
SHMT2-217ENST00000555116 NCBP3Q53F19 620 aaKnown RBP18.58■□□□□ 0.57
SHMT2-217ENST00000555116 MSL1Q68DK7 614 aa18.58■□□□□ 0.57
SHMT2-217ENST00000555116 CANXP27824 592 aaKnown RBP18.58■□□□□ 0.56
SHMT2-217ENST00000555116 ZNF853P0CG23 659 aa18.57■□□□□ 0.56
SHMT2-217ENST00000555116 CFAP44Q96MT7 982 aa18.57■□□□□ 0.56
SHMT2-217ENST00000555116 LAS1LQ9Y4W2 734 aaKnown RBP18.57■□□□□ 0.56
SHMT2-217ENST00000555116 RFC4P35249 363 aa18.56■□□□□ 0.56
SHMT2-217ENST00000555116 EIF5P55010 431 aaKnown RBP18.56■□□□□ 0.56
SHMT2-217ENST00000555116 COL15A1P39059 1388 aa18.56■□□□□ 0.56
SHMT2-217ENST00000555116 CALD1Q05682 793 aaKnown RBP18.56■□□□□ 0.56
SHMT2-217ENST00000555116 WWC1Q8IX03 1113 aa18.56■□□□□ 0.56
SHMT2-217ENST00000555116 IFT57Q9NWB7 429 aa18.55■□□□□ 0.56
SHMT2-217ENST00000555116 SRP68Q9UHB9 627 aaKnown RBP18.55■□□□□ 0.56
SHMT2-217ENST00000555116 USP42Q9H9J4 1324 aaKnown RBP18.54■□□□□ 0.56
SHMT2-217ENST00000555116 GYS1P13807 737 aa18.54■□□□□ 0.56
SHMT2-217ENST00000555116 POLD1P28340 1107 aa18.54■□□□□ 0.56
SHMT2-217ENST00000555116 IL6STP40189 918 aaPredicted RBP18.54■□□□□ 0.56
SHMT2-217ENST00000555116 PPP1R1BQ9UD71 204 aaPredicted RBP18.54■□□□□ 0.56
SHMT2-217ENST00000555116 ARXQ96QS3 562 aa18.54■□□□□ 0.56
SHMT2-217ENST00000555116 MBIPQ9NS73 344 aa18.54■□□□□ 0.56
SHMT2-217ENST00000555116 NBPF26B4DH59 902 aa18.53■□□□□ 0.56
SHMT2-217ENST00000555116 PIP4K2AP48426 406 aaPredicted RBP18.53■□□□□ 0.56
SHMT2-217ENST00000555116 GNAI1P63096 354 aa18.53■□□□□ 0.56
SHMT2-217ENST00000555116 NBPF10Q6P3W6 841 aaKnown RBP18.53■□□□□ 0.56
SHMT2-217ENST00000555116 NBPF15Q8N660 670 aa18.53■□□□□ 0.56
SHMT2-217ENST00000555116 KRT24Q2M2I5 525 aa18.52■□□□□ 0.56
SHMT2-217ENST00000555116 NARFQ9UHQ1 456 aa18.52■□□□□ 0.56
SHMT2-217ENST00000555116 SCN7AQ01118 1682 aa18.52■□□□□ 0.56
SHMT2-217ENST00000555116 SALL2Q9Y467 1007 aaPredicted RBP18.52■□□□□ 0.55
SHMT2-217ENST00000555116 BCORQ6W2J9 1755 aa18.51■□□□□ 0.55
SHMT2-217ENST00000555116 A0A087WZG4 1122 aa18.51■□□□□ 0.55
SHMT2-217ENST00000555116 NLGN1Q8N2Q7 840 aa18.51■□□□□ 0.55
SHMT2-217ENST00000555116 USPL1Q5W0Q7 1092 aa18.5■□□□□ 0.55
SHMT2-217ENST00000555116 IL16Q14005 1332 aa18.5■□□□□ 0.55
SHMT2-217ENST00000555116 ZPR1O75312 459 aa18.5■□□□□ 0.55
SHMT2-217ENST00000555116 FKBP8Q14318 412 aa18.5■□□□□ 0.55
SHMT2-217ENST00000555116 NGEFQ8N5V2 710 aa18.5■□□□□ 0.55
SHMT2-217ENST00000555116 BCL2L12Q9HB09 334 aa18.5■□□□□ 0.55
SHMT2-217ENST00000555116 ZNF330Q9Y3S2 320 aaPredicted RBP18.5■□□□□ 0.55
SHMT2-217ENST00000555116 CENPBP07199 599 aaPredicted RBP18.49■□□□□ 0.55
SHMT2-217ENST00000555116 MMP10P09238 476 aa18.48■□□□□ 0.55
SHMT2-217ENST00000555116 WDR63Q8IWG1 891 aa18.48■□□□□ 0.55
SHMT2-217ENST00000555116 FHDC1Q9C0D6 1143 aaPredicted RBP18.48■□□□□ 0.55
SHMT2-217ENST00000555116 TBC1D2BQ9UPU7 963 aa18.48■□□□□ 0.55
SHMT2-217ENST00000555116 ERBB4Q15303 1308 aa18.48■□□□□ 0.55
SHMT2-217ENST00000555116 EIF2S2P20042 333 aaKnown RBP18.47■□□□□ 0.55
SHMT2-217ENST00000555116 AFDNP55196 1824 aaKnown RBP18.47■□□□□ 0.55
SHMT2-217ENST00000555116 CAMTA2O94983 1202 aa18.46■□□□□ 0.55
SHMT2-217ENST00000555116 HOXB7P09629 217 aa18.46■□□□□ 0.55
SHMT2-217ENST00000555116 PDIA6Q15084 440 aa18.46■□□□□ 0.55
SHMT2-217ENST00000555116 DUSP27Q5VZP5 1158 aa18.46■□□□□ 0.55
SHMT2-217ENST00000555116 DZIP3Q86Y13 1208 aaKnown RBP18.46■□□□□ 0.55
SHMT2-217ENST00000555116 KIF13BQ9NQT8 1826 aa18.46■□□□□ 0.55
SHMT2-217ENST00000555116 TM4SF1P30408 202 aa18.46■□□□□ 0.54
SHMT2-217ENST00000555116 TSR2Q969E8 191 aaKnown RBP18.46■□□□□ 0.54
SHMT2-217ENST00000555116 SYT17Q9BSW7 474 aa18.46■□□□□ 0.54
SHMT2-217ENST00000555116 ZNF521Q96K83 1311 aa18.45■□□□□ 0.54
SHMT2-217ENST00000555116 LRP10Q7Z4F1 713 aa18.45■□□□□ 0.54
SHMT2-217ENST00000555116 NPM2Q86SE8 214 aaKnown RBP18.45■□□□□ 0.54
SHMT2-217ENST00000555116 NUP98P52948 1817 aa18.45■□□□□ 0.54
SHMT2-217ENST00000555116 DDR1Q08345 913 aa18.44■□□□□ 0.54
SHMT2-217ENST00000555116 C8orf58Q8NAV2 365 aa18.44■□□□□ 0.54
SHMT2-217ENST00000555116 NRXN2Q9P2S2 1712 aa18.44■□□□□ 0.54
SHMT2-217ENST00000555116 MYL6BP14649 208 aa18.43■□□□□ 0.54
SHMT2-217ENST00000555116 NFIXQ14938 502 aa18.43■□□□□ 0.54
SHMT2-217ENST00000555116 PROSER3Q2NL68 480 aa18.43■□□□□ 0.54
SHMT2-217ENST00000555116 NECTIN2Q92692 538 aa18.43■□□□□ 0.54
SHMT2-217ENST00000555116 SPINK5Q9NQ38 1064 aaPredicted RBP18.43■□□□□ 0.54
SHMT2-217ENST00000555116 PARP3Q9Y6F1 533 aa18.43■□□□□ 0.54
SHMT2-217ENST00000555116 KLHL34Q8N239 644 aa18.42■□□□□ 0.54
SHMT2-217ENST00000555116 FANCIQ9NVI1 1328 aa18.42■□□□□ 0.54
SHMT2-217ENST00000555116 POLRMTO00411 1230 aaKnown RBP18.41■□□□□ 0.54
SHMT2-217ENST00000555116 ELL2O00472 640 aaPredicted RBP18.41■□□□□ 0.54
SHMT2-217ENST00000555116 ANXA1P04083 346 aa18.41■□□□□ 0.54
SHMT2-217ENST00000555116 HDGFL1Q5TGJ6 251 aa18.41■□□□□ 0.54
SHMT2-217ENST00000555116 TBC1D9BQ66K14 1250 aa18.41■□□□□ 0.54
SHMT2-217ENST00000555116 TTLL7Q6ZT98 887 aa18.41■□□□□ 0.54
SHMT2-217ENST00000555116 YTHDC1Q96MU7 727 aaKnown RBP18.41■□□□□ 0.54
SHMT2-217ENST00000555116 TSPYL6Q8N831 410 aa18.41■□□□□ 0.54
SHMT2-217ENST00000555116 DDX21Q9NR30 783 aaKnown RBP eCLIP18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms