RNA–Protein interactions for RNA: ENST00000550828.1

ERBB3-215, Transcript of erb-b2 receptor tyrosine kinase 3, humanhuman

TSL 1 (best)

Gene ERBB3, Length 266 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB3-215ENST00000550828 TXNRD1Q16881 649 aa17.52■□□□□ 0.4
ERBB3-215ENST00000550828 ELL2O00472 640 aaPredicted RBP17.51■□□□□ 0.39
ERBB3-215ENST00000550828 LINC00116Q8NCU8 138 aa17.51■□□□□ 0.39
ERBB3-215ENST00000550828 VSIG10Q8N0Z9 540 aa17.5■□□□□ 0.39
ERBB3-215ENST00000550828 SPON1Q9HCB6 807 aa17.5■□□□□ 0.39
ERBB3-215ENST00000550828 PPP1R1BQ9UD71 204 aaPredicted RBP17.5■□□□□ 0.39
ERBB3-215ENST00000550828 CCNL1Q9UK58 526 aaPredicted RBP17.5■□□□□ 0.39
ERBB3-215ENST00000550828 USP16Q9Y5T5 823 aa17.5■□□□□ 0.39
ERBB3-215ENST00000550828 C4AP0C0L4 1744 aa17.5■□□□□ 0.39
ERBB3-215ENST00000550828 SNRPA1P09661 255 aaKnown RBP17.49■□□□□ 0.39
ERBB3-215ENST00000550828 ATP6V1AP38606 617 aa17.49■□□□□ 0.39
ERBB3-215ENST00000550828 QSER1Q2KHR3 1735 aa17.49■□□□□ 0.39
ERBB3-215ENST00000550828 VAMP4O75379 141 aa17.48■□□□□ 0.39
ERBB3-215ENST00000550828 CYP19A1P11511 503 aaPredicted RBP17.48■□□□□ 0.39
ERBB3-215ENST00000550828 TWISTNBQ3B726 338 aaPredicted RBP17.48■□□□□ 0.39
ERBB3-215ENST00000550828 SLC27A3Q5K4L6 730 aa17.47■□□□□ 0.39
ERBB3-215ENST00000550828 HOXB7P09629 217 aa17.46■□□□□ 0.39
ERBB3-215ENST00000550828 INTS5Q6P9B9 1019 aaKnown RBP17.46■□□□□ 0.39
ERBB3-215ENST00000550828 AMIGO3Q86WK7 504 aa17.46■□□□□ 0.39
ERBB3-215ENST00000550828 NECTIN2Q92692 538 aa17.46■□□□□ 0.39
ERBB3-215ENST00000550828 NBPF26B4DH59 902 aa17.45■□□□□ 0.38
ERBB3-215ENST00000550828 TCERG1O14776 1098 aaKnown RBP17.45■□□□□ 0.38
ERBB3-215ENST00000550828 A1BGP04217 495 aa17.45■□□□□ 0.38
ERBB3-215ENST00000550828 PIP4K2AP48426 406 aaPredicted RBP17.45■□□□□ 0.38
ERBB3-215ENST00000550828 PROSER3Q2NL68 480 aa17.45■□□□□ 0.38
ERBB3-215ENST00000550828 NBPF10Q6P3W6 841 aaKnown RBP17.45■□□□□ 0.38
ERBB3-215ENST00000550828 NBPF15Q8N660 670 aa17.45■□□□□ 0.38
ERBB3-215ENST00000550828 ANO8Q9HCE9 1232 aaPredicted RBP17.45■□□□□ 0.38
ERBB3-215ENST00000550828 BCORQ6W2J9 1755 aa17.44■□□□□ 0.38
ERBB3-215ENST00000550828 EIF2S2P20042 333 aaKnown RBP17.44■□□□□ 0.38
ERBB3-215ENST00000550828 CRKLP46109 303 aaKnown RBP17.44■□□□□ 0.38
ERBB3-215ENST00000550828 PDIA6Q15084 440 aa17.44■□□□□ 0.38
ERBB3-215ENST00000550828 ZNF827Q17R98 1081 aa17.44■□□□□ 0.38
ERBB3-215ENST00000550828 SMIM5Q71RC9 77 aa17.44■□□□□ 0.38
ERBB3-215ENST00000550828 LRP10Q7Z4F1 713 aa17.44■□□□□ 0.38
ERBB3-215ENST00000550828 ZBTB1Q9Y2K1 713 aa17.44■□□□□ 0.38
ERBB3-215ENST00000550828 SOS1Q07889 1333 aaPredicted RBP17.44■□□□□ 0.38
ERBB3-215ENST00000550828 CNTNAP4Q9C0A0 1308 aa17.44■□□□□ 0.38
ERBB3-215ENST00000550828 ANXA1P04083 346 aa17.43■□□□□ 0.38
ERBB3-215ENST00000550828 HDGFL1Q5TGJ6 251 aa17.43■□□□□ 0.38
ERBB3-215ENST00000550828 AKT1S1Q96B36 256 aa17.42■□□□□ 0.38
ERBB3-215ENST00000550828 TEX13AQ9BXU3 409 aaPredicted RBP17.42■□□□□ 0.38
ERBB3-215ENST00000550828 CCDC87Q9NVE4 849 aa17.42■□□□□ 0.38
ERBB3-215ENST00000550828 CHPF2Q9P2E5 772 aa17.42■□□□□ 0.38
ERBB3-215ENST00000550828 CASZ1Q86V15 1759 aa17.41■□□□□ 0.38
ERBB3-215ENST00000550828 ARFGEF2Q9Y6D5 1785 aa17.41■□□□□ 0.38
ERBB3-215ENST00000550828 STARD3NLO95772 234 aa17.41■□□□□ 0.38
ERBB3-215ENST00000550828 SCN7AQ01118 1682 aa17.41■□□□□ 0.38
ERBB3-215ENST00000550828 NUP98P52948 1817 aa17.4■□□□□ 0.38
ERBB3-215ENST00000550828 RC3H1Q5TC82 1133 aaKnown RBP17.4■□□□□ 0.38
ERBB3-215ENST00000550828 SSH1Q8WYL5 1049 aa17.4■□□□□ 0.38
ERBB3-215ENST00000550828 RARSP54136 660 aaKnown RBP17.39■□□□□ 0.37
ERBB3-215ENST00000550828 BCL2L13Q9BXK5 485 aa17.39■□□□□ 0.37
ERBB3-215ENST00000550828 ERBB4Q15303 1308 aa17.39■□□□□ 0.37
ERBB3-215ENST00000550828 ANKRD36CQ5JPF3 1778 aa17.38■□□□□ 0.37
ERBB3-215ENST00000550828 CT47B1P0C2W7 299 aaPredicted RBP17.38■□□□□ 0.37
ERBB3-215ENST00000550828 CANXP27824 592 aaKnown RBP17.38■□□□□ 0.37
ERBB3-215ENST00000550828 CCDC30Q5VVM6 783 aa17.38■□□□□ 0.37
ERBB3-215ENST00000550828 G2E3Q7L622 706 aa17.38■□□□□ 0.37
ERBB3-215ENST00000550828 DDX21Q9NR30 783 aaKnown RBP eCLIP17.38■□□□□ 0.37
ERBB3-215ENST00000550828 N4BP2Q86UW6 1770 aaPredicted RBP17.38■□□□□ 0.37
ERBB3-215ENST00000550828 GNPATO15228 680 aa17.37■□□□□ 0.37
ERBB3-215ENST00000550828 EIF5P55010 431 aaKnown RBP17.37■□□□□ 0.37
ERBB3-215ENST00000550828 MRPL50Q8N5N7 158 aaKnown RBP17.37■□□□□ 0.37
ERBB3-215ENST00000550828 RPS6KA4O75676 772 aa17.36■□□□□ 0.37
ERBB3-215ENST00000550828 MYL6BP14649 208 aa17.36■□□□□ 0.37
ERBB3-215ENST00000550828 AK7Q96M32 723 aa17.36■□□□□ 0.37
ERBB3-215ENST00000550828 COL15A1P39059 1388 aa17.36■□□□□ 0.37
ERBB3-215ENST00000550828 BCAR3O75815 825 aa17.35■□□□□ 0.37
ERBB3-215ENST00000550828 PHAXQ9H814 394 aaKnown RBP17.35■□□□□ 0.37
ERBB3-215ENST00000550828 DBF4Q9UBU7 674 aaPredicted RBP17.35■□□□□ 0.37
ERBB3-215ENST00000550828 CHD4Q14839 1912 aa17.35■□□□□ 0.37
ERBB3-215ENST00000550828 IL6STP40189 918 aaPredicted RBP17.34■□□□□ 0.37
ERBB3-215ENST00000550828 ALDH1L2Q3SY69 923 aa17.34■□□□□ 0.37
ERBB3-215ENST00000550828 TTLL7Q6ZT98 887 aa17.34■□□□□ 0.37
ERBB3-215ENST00000550828 PNPLA7Q6ZV29 1317 aa17.34■□□□□ 0.37
ERBB3-215ENST00000550828 ZNF428Q96B54 188 aa17.34■□□□□ 0.37
ERBB3-215ENST00000550828 RCAN3Q9UKA8 241 aa17.34■□□□□ 0.37
ERBB3-215ENST00000550828 AFDNP55196 1824 aaKnown RBP17.33■□□□□ 0.37
ERBB3-215ENST00000550828 SLC4A2P04920 1241 aa17.33■□□□□ 0.36
ERBB3-215ENST00000550828 SLC15A2Q16348 729 aa17.33■□□□□ 0.36
ERBB3-215ENST00000550828 XAGE3Q8WTP9 111 aa17.33■□□□□ 0.36
ERBB3-215ENST00000550828 SMC4Q9NTJ3 1288 aa17.33■□□□□ 0.36
ERBB3-215ENST00000550828 COL24A1Q17RW2 1714 aa17.33■□□□□ 0.36
ERBB3-215ENST00000550828 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.32■□□□□ 0.36
ERBB3-215ENST00000550828 PHF14O94880 888 aa17.32■□□□□ 0.36
ERBB3-215ENST00000550828 STK31Q9BXU1 1019 aa17.32■□□□□ 0.36
ERBB3-215ENST00000550828 PDGFDQ9GZP0 370 aaPredicted RBP17.32■□□□□ 0.36
ERBB3-215ENST00000550828 RTCBQ9Y3I0 505 aaKnown RBP17.32■□□□□ 0.36
ERBB3-215ENST00000550828 ZNF330Q9Y3S2 320 aaPredicted RBP17.32■□□□□ 0.36
ERBB3-215ENST00000550828 ADCY9O60503 1353 aa17.31■□□□□ 0.36
ERBB3-215ENST00000550828 SSFA2P28290 1259 aa17.31■□□□□ 0.36
ERBB3-215ENST00000550828 BRPF1P55201 1214 aaPredicted RBP17.31■□□□□ 0.36
ERBB3-215ENST00000550828 COPS6Q7L5N1 327 aa17.31■□□□□ 0.36
ERBB3-215ENST00000550828 COL23A1Q86Y22 540 aaPredicted RBP17.31■□□□□ 0.36
ERBB3-215ENST00000550828 ARHGEF1Q92888 912 aaKnown RBP17.31■□□□□ 0.36
ERBB3-215ENST00000550828 HYPKQ9NX55 129 aa17.31■□□□□ 0.36
ERBB3-215ENST00000550828 STK32BQ9NY57 414 aa17.31■□□□□ 0.36
ERBB3-215ENST00000550828 TNNQ9UQP3 1299 aa17.31■□□□□ 0.36
ERBB3-215ENST00000550828 FLIIQ13045 1269 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms