RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 KLHL10Q6JEL2 608 aa12.03□□□□□ -0.48
PCDH9-204ENST00000544246 EHMT1Q9H9B1 1298 aa12.03□□□□□ -0.48
PCDH9-204ENST00000544246 CABP2Q9NPB3 220 aa12.03□□□□□ -0.48
PCDH9-204ENST00000544246 GTF2F1P35269 517 aaKnown RBP eCLIP12.03□□□□□ -0.48
PCDH9-204ENST00000544246 CEBPAP49715 358 aaPredicted RBP12.03□□□□□ -0.48
PCDH9-204ENST00000544246 HDGFL1Q5TGJ6 251 aa12.03□□□□□ -0.48
PCDH9-204ENST00000544246 CWC27Q6UX04 472 aaKnown RBP12.03□□□□□ -0.48
PCDH9-204ENST00000544246 AIDAQ96BJ3 306 aa12.03□□□□□ -0.48
PCDH9-204ENST00000544246 CUL5Q93034 780 aa12.03□□□□□ -0.48
PCDH9-204ENST00000544246 NAP1L3Q99457 506 aaPredicted RBP12.03□□□□□ -0.48
PCDH9-204ENST00000544246 RAB34Q9BZG1 259 aa12.03□□□□□ -0.48
PCDH9-204ENST00000544246 SYCE3A1L190 88 aa12.03□□□□□ -0.48
PCDH9-204ENST00000544246 CLIP2Q9UDT6 1046 aa12.02□□□□□ -0.48
PCDH9-204ENST00000544246 EFCAB5A4FU69 1503 aa12.02□□□□□ -0.49
PCDH9-204ENST00000544246 UBAP1LF5GYI3 381 aa12.02□□□□□ -0.49
PCDH9-204ENST00000544246 CETN1Q12798 172 aa12.02□□□□□ -0.49
PCDH9-204ENST00000544246 LRRC45Q96CN5 670 aa12.02□□□□□ -0.49
PCDH9-204ENST00000544246 TMX1Q9H3N1 280 aa12.02□□□□□ -0.49
PCDH9-204ENST00000544246 ADGRL1O94910 1474 aa12.02□□□□□ -0.49
PCDH9-204ENST00000544246 ABTB2Q8N961 1025 aa12.02□□□□□ -0.49
PCDH9-204ENST00000544246 MXRA7P84157 204 aa12.02□□□□□ -0.49
PCDH9-204ENST00000544246 CCDC6Q16204 474 aa12.02□□□□□ -0.49
PCDH9-204ENST00000544246 TROQ12816 1431 aaPredicted RBP12.02□□□□□ -0.49
PCDH9-204ENST00000544246 CASTP20810 708 aaKnown RBP12.01□□□□□ -0.49
PCDH9-204ENST00000544246 TRERF1Q96PN7 1200 aa12.01□□□□□ -0.49
PCDH9-204ENST00000544246 NSRP1Q9H0G5 558 aaKnown RBP12.01□□□□□ -0.49
PCDH9-204ENST00000544246 STRN4Q9NRL3 753 aa12.01□□□□□ -0.49
PCDH9-204ENST00000544246 HSF2BPO75031 334 aa12.01□□□□□ -0.49
PCDH9-204ENST00000544246 WDHD1O75717 1129 aaPredicted RBP12.01□□□□□ -0.49
PCDH9-204ENST00000544246 PRKAR2BP31323 418 aa12.01□□□□□ -0.49
PCDH9-204ENST00000544246 SEPT6Q14141 434 aa12.01□□□□□ -0.49
PCDH9-204ENST00000544246 CCDC183Q5T5S1 534 aa12.01□□□□□ -0.49
PCDH9-204ENST00000544246 BRD4O60885 1362 aaPredicted RBP12.01□□□□□ -0.49
PCDH9-204ENST00000544246 A0A1W2PRG0 241 aa12.01□□□□□ -0.49
PCDH9-204ENST00000544246 CCDC160A6NGH7 325 aa12.01□□□□□ -0.49
PCDH9-204ENST00000544246 NOL3O60936 208 aaKnown RBP12.01□□□□□ -0.49
PCDH9-204ENST00000544246 HSPA4P34932 840 aa12.01□□□□□ -0.49
PCDH9-204ENST00000544246 IGHMBP2P38935 993 aaKnown RBP12.01□□□□□ -0.49
PCDH9-204ENST00000544246 PDE3AQ14432 1141 aa12.01□□□□□ -0.49
PCDH9-204ENST00000544246 TCP11L2Q8N4U5 519 aa12.01□□□□□ -0.49
PCDH9-204ENST00000544246 HECW1Q76N89 1606 aa12.01□□□□□ -0.49
PCDH9-204ENST00000544246 PRPF4BQ13523 1007 aaKnown RBP12.01□□□□□ -0.49
PCDH9-204ENST00000544246 ANAPC4Q9UJX5 808 aa12.01□□□□□ -0.49
PCDH9-204ENST00000544246 APBB1IPQ7Z5R6 666 aaPredicted RBP12□□□□□ -0.49
PCDH9-204ENST00000544246 MYL6BP14649 208 aa12□□□□□ -0.49
PCDH9-204ENST00000544246 ACTN2P35609 894 aa12□□□□□ -0.49
PCDH9-204ENST00000544246 CHD1LQ86WJ1 897 aa12□□□□□ -0.49
PCDH9-204ENST00000544246 CCDC155Q8N6L0 562 aa12□□□□□ -0.49
PCDH9-204ENST00000544246 CEP126Q9P2H0 1117 aa12□□□□□ -0.49
PCDH9-204ENST00000544246 SPG7Q9UQ90 795 aa12□□□□□ -0.49
PCDH9-204ENST00000544246 CASKIN1Q8WXD9 1431 aa12□□□□□ -0.49
PCDH9-204ENST00000544246 NEMFO60524 1076 aa12□□□□□ -0.49
PCDH9-204ENST00000544246 POLR3DP05423 398 aaPredicted RBP12□□□□□ -0.49
PCDH9-204ENST00000544246 DDX46Q7L014 1031 aaKnown RBP12□□□□□ -0.49
PCDH9-204ENST00000544246 CRACR2BQ8N4Y2 399 aaPredicted RBP12□□□□□ -0.49
PCDH9-204ENST00000544246 SPINK5Q9NQ38 1064 aaPredicted RBP12□□□□□ -0.49
PCDH9-204ENST00000544246 DNAAF4Q8WXU2 420 aa12□□□□□ -0.49
PCDH9-204ENST00000544246 ADAMTS8Q9UP79 889 aa12□□□□□ -0.49
PCDH9-204ENST00000544246 MTHFSP49914 203 aa11.99□□□□□ -0.49
PCDH9-204ENST00000544246 IDH1O75874 414 aaKnown RBP11.99□□□□□ -0.49
PCDH9-204ENST00000544246 LIG1P18858 919 aa11.99□□□□□ -0.49
PCDH9-204ENST00000544246 CPLX3Q8WVH0 158 aa11.99□□□□□ -0.49
PCDH9-204ENST00000544246 TOM1O60784 492 aa11.99□□□□□ -0.49
PCDH9-204ENST00000544246 PRKCSHP14314 528 aaPredicted RBP11.99□□□□□ -0.49
PCDH9-204ENST00000544246 MCM4P33991 863 aa11.99□□□□□ -0.49
PCDH9-204ENST00000544246 MNAT1P51948 309 aa11.99□□□□□ -0.49
PCDH9-204ENST00000544246 CTAGE5O15320 804 aa11.99□□□□□ -0.49
PCDH9-204ENST00000544246 MTIF2P46199 727 aaKnown RBP11.99□□□□□ -0.49
PCDH9-204ENST00000544246 FAM114A1Q8IWE2 563 aa11.99□□□□□ -0.49
PCDH9-204ENST00000544246 BAG4O95429 457 aaKnown RBP11.99□□□□□ -0.49
PCDH9-204ENST00000544246 CKAP4Q07065 602 aaKnown RBP11.99□□□□□ -0.49
PCDH9-204ENST00000544246 CCDC96Q2M329 555 aa11.99□□□□□ -0.49
PCDH9-204ENST00000544246 CCDC7Q96M83 1385 aa11.98□□□□□ -0.49
PCDH9-204ENST00000544246 IFI16Q16666 785 aaKnown RBP11.98□□□□□ -0.49
PCDH9-204ENST00000544246 IQCGQ9H095 443 aaKnown RBP11.98□□□□□ -0.49
PCDH9-204ENST00000544246 CCDC196A0A1B0GTZ2 297 aa11.98□□□□□ -0.49
PCDH9-204ENST00000544246 GOLGA6L9A6NEM1 432 aa11.98□□□□□ -0.49
PCDH9-204ENST00000544246 PRC1O43663 620 aa11.98□□□□□ -0.49
PCDH9-204ENST00000544246 GSDMDP57764 484 aa11.98□□□□□ -0.49
PCDH9-204ENST00000544246 ESCO1Q5FWF5 840 aa11.98□□□□□ -0.49
PCDH9-204ENST00000544246 MKNK2Q9HBH9 465 aa11.98□□□□□ -0.49
PCDH9-204ENST00000544246 ATP2C2O75185 946 aa11.98□□□□□ -0.49
PCDH9-204ENST00000544246 ARL1P40616 181 aaPredicted RBP11.98□□□□□ -0.49
PCDH9-204ENST00000544246 CCDC40Q4G0X9 1142 aa11.98□□□□□ -0.49
PCDH9-204ENST00000544246 MSL1Q68DK7 614 aa11.98□□□□□ -0.49
PCDH9-204ENST00000544246 STAC3Q96MF2 364 aa11.98□□□□□ -0.49
PCDH9-204ENST00000544246 TPD52P55327 224 aaPredicted RBP11.98□□□□□ -0.49
PCDH9-204ENST00000544246 STXBP4Q6ZWJ1 553 aa11.98□□□□□ -0.49
PCDH9-204ENST00000544246 U3KPZ7 1027 aaPredicted RBP11.98□□□□□ -0.49
PCDH9-204ENST00000544246 SRGAP3O43295 1099 aa11.97□□□□□ -0.49
PCDH9-204ENST00000544246 NOP2P46087 812 aaKnown RBP11.97□□□□□ -0.49
PCDH9-204ENST00000544246 TTC16Q8NEE8 873 aa11.97□□□□□ -0.49
PCDH9-204ENST00000544246 SCAND2PQ9GZW5 306 aaPredicted RBP11.97□□□□□ -0.49
PCDH9-204ENST00000544246 NDC80O14777 642 aa11.97□□□□□ -0.49
PCDH9-204ENST00000544246 GTF2A1P52655 376 aaPredicted RBP11.97□□□□□ -0.49
PCDH9-204ENST00000544246 AMPD3Q01432 767 aa11.97□□□□□ -0.49
PCDH9-204ENST00000544246 KIAA0753Q2KHM9 967 aa11.97□□□□□ -0.49
PCDH9-204ENST00000544246 CNNM3Q8NE01 707 aa11.97□□□□□ -0.49
PCDH9-204ENST00000544246 ZNF428Q96B54 188 aa11.97□□□□□ -0.49
PCDH9-204ENST00000544246 PUF60Q9UHX1 559 aaKnown RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms