RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 DCAF8L2P0C7V8 631 aa17.29■□□□□ 0.36
PCDH9-204ENST00000544246 PELP1Q8IZL8 1130 aaKnown RBP17.06■□□□□ 0.32
PCDH9-204ENST00000544246 NISCHQ9Y2I1 1504 aa17.05■□□□□ 0.32
PCDH9-204ENST00000544246 ERICH6Q7L0X2 663 aa16.42■□□□□ 0.22
PCDH9-204ENST00000544246 SUPT5HO00267 1087 aaKnown RBP16.39■□□□□ 0.21
PCDH9-204ENST00000544246 CCER1Q8TC90 406 aaPredicted RBP16.28■□□□□ 0.2
PCDH9-204ENST00000544246 EHMT2Q96KQ7 1210 aa16.24■□□□□ 0.19
PCDH9-204ENST00000544246 APLP2Q06481 763 aa16.21■□□□□ 0.18
PCDH9-204ENST00000544246 FAM9AQ8IZU1 332 aaPredicted RBP16.02■□□□□ 0.16
PCDH9-204ENST00000544246 CENPBP07199 599 aaPredicted RBP15.98■□□□□ 0.15
PCDH9-204ENST00000544246 MYT1Q01538 1121 aa15.92■□□□□ 0.14
PCDH9-204ENST00000544246 SHROOM4Q9ULL8 1493 aa15.81■□□□□ 0.12
PCDH9-204ENST00000544246 NEFLP07196 543 aa15.78■□□□□ 0.12
PCDH9-204ENST00000544246 TTBK1Q5TCY1 1321 aaPredicted RBP15.76■□□□□ 0.11
PCDH9-204ENST00000544246 PCGF6Q9BYE7 350 aa15.7■□□□□ 0.1
PCDH9-204ENST00000544246 ZEB1P37275 1124 aaPredicted RBP15.65■□□□□ 0.1
PCDH9-204ENST00000544246 DAXXQ9UER7 740 aaPredicted RBP15.58■□□□□ 0.08
PCDH9-204ENST00000544246 YTHDC1Q96MU7 727 aaKnown RBP15.51■□□□□ 0.07
PCDH9-204ENST00000544246 ATP1B4Q9UN42 357 aaPredicted RBP15.5■□□□□ 0.07
PCDH9-204ENST00000544246 RANGAP1P46060 587 aaPredicted RBP15.48■□□□□ 0.07
PCDH9-204ENST00000544246 ABCC9O60706 1549 aa15.46■□□□□ 0.07
PCDH9-204ENST00000544246 ZNF316A6NFI3 1004 aaPredicted RBP15.17■□□□□ 0.02
PCDH9-204ENST00000544246 UBTFP17480 764 aaKnown RBP15.17■□□□□ 0.02
PCDH9-204ENST00000544246 RTL5Q5HYW3 569 aaPredicted RBP15.16■□□□□ 0.02
PCDH9-204ENST00000544246 TRIM41Q8WV44 630 aa15.16■□□□□ 0.02
PCDH9-204ENST00000544246 POLR3GLQ9BT43 218 aa15.13■□□□□ 0.01
PCDH9-204ENST00000544246 MYT1LQ9UL68 1186 aa15.06■□□□□ 0
PCDH9-204ENST00000544246 PABPN1Q86U42 306 aaKnown RBP eCLIP15.05■□□□□ -0
PCDH9-204ENST00000544246 CLSPNQ9HAW4 1339 aa15.03■□□□□ -0
PCDH9-204ENST00000544246 SLC4A1APQ9BWU0 796 aaKnown RBP14.93□□□□□ -0.02
PCDH9-204ENST00000544246 CNGB1Q14028 1251 aaPredicted RBP14.92□□□□□ -0.02
PCDH9-204ENST00000544246 PPARGC1BQ86YN6 1023 aaKnown RBP14.87□□□□□ -0.03
PCDH9-204ENST00000544246 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.85□□□□□ -0.03
PCDH9-204ENST00000544246 HNRNPUL2Q1KMD3 747 aaKnown RBP14.85□□□□□ -0.03
PCDH9-204ENST00000544246 ITGAEP38570 1179 aa14.84□□□□□ -0.03
PCDH9-204ENST00000544246 TRIM26Q12899 539 aaPredicted RBP14.8□□□□□ -0.04
PCDH9-204ENST00000544246 CHIC1Q5VXU3 224 aa14.8□□□□□ -0.04
PCDH9-204ENST00000544246 HRCP23327 699 aa14.77□□□□□ -0.04
PCDH9-204ENST00000544246 ZBTB47Q9UFB7 747 aaPredicted RBP14.76□□□□□ -0.05
PCDH9-204ENST00000544246 CDK11AQ9UQ88 783 aaPredicted RBP14.61□□□□□ -0.07
PCDH9-204ENST00000544246 BCANQ96GW7 911 aa14.55□□□□□ -0.08
PCDH9-204ENST00000544246 DIEXFQ68CQ4 756 aaKnown RBP14.53□□□□□ -0.08
PCDH9-204ENST00000544246 CANXP27824 592 aaKnown RBP14.53□□□□□ -0.08
PCDH9-204ENST00000544246 CCDC180Q9P1Z9 1646 aa14.53□□□□□ -0.08
PCDH9-204ENST00000544246 SLC24A1O60721 1099 aa14.51□□□□□ -0.09
PCDH9-204ENST00000544246 BCL11AQ9H165 835 aa14.5□□□□□ -0.09
PCDH9-204ENST00000544246 ANP32BQ92688 251 aaKnown RBP14.48□□□□□ -0.09
PCDH9-204ENST00000544246 EIF5BO60841 1220 aaKnown RBP14.45□□□□□ -0.1
PCDH9-204ENST00000544246 TRIM52Q96A61 297 aa14.45□□□□□ -0.1
PCDH9-204ENST00000544246 GLIPR1L2Q4G1C9 344 aa14.44□□□□□ -0.1
PCDH9-204ENST00000544246 RB1CC1Q8TDY2 1594 aa14.44□□□□□ -0.1
PCDH9-204ENST00000544246 ANP32AP39687 249 aaKnown RBP14.43□□□□□ -0.1
PCDH9-204ENST00000544246 ANP32CO43423 234 aa14.42□□□□□ -0.1
PCDH9-204ENST00000544246 NEFMP07197 916 aa14.42□□□□□ -0.1
PCDH9-204ENST00000544246 FAM50AQ14320 339 aaKnown RBP14.39□□□□□ -0.11
PCDH9-204ENST00000544246 NEUROD1Q13562 356 aa14.36□□□□□ -0.11
PCDH9-204ENST00000544246 GTF3C3Q9Y5Q9 886 aa14.35□□□□□ -0.11
PCDH9-204ENST00000544246 ZNF326Q5BKZ1 582 aaKnown RBP14.33□□□□□ -0.11
PCDH9-204ENST00000544246 NPM2Q86SE8 214 aaKnown RBP14.32□□□□□ -0.12
PCDH9-204ENST00000544246 SCRIBQ14160 1630 aa14.3□□□□□ -0.12
PCDH9-204ENST00000544246 HSP90AA1P07900 732 aaKnown RBP14.3□□□□□ -0.12
PCDH9-204ENST00000544246 FBLN2P98095 1184 aa14.29□□□□□ -0.12
PCDH9-204ENST00000544246 LOC105371045A0A1W2PR82 267 aa14.24□□□□□ -0.13
PCDH9-204ENST00000544246 UPF2Q9HAU5 1272 aaKnown RBP14.21□□□□□ -0.13
PCDH9-204ENST00000544246 CDK11BP21127 795 aaKnown RBP14.2□□□□□ -0.14
PCDH9-204ENST00000544246 NACADO15069 1562 aa14.18□□□□□ -0.14
PCDH9-204ENST00000544246 ARXQ96QS3 562 aa14.04□□□□□ -0.16
PCDH9-204ENST00000544246 ACIN1Q9UKV3 1341 aaKnown RBP14.01□□□□□ -0.17
PCDH9-204ENST00000544246 ERCC6Q03468 1493 aa14.01□□□□□ -0.17
PCDH9-204ENST00000544246 ZCCHC6Q5VYS8 1495 aaKnown RBP14□□□□□ -0.17
PCDH9-204ENST00000544246 FKBP8Q14318 412 aa13.99□□□□□ -0.17
PCDH9-204ENST00000544246 NBR1Q14596 966 aa13.99□□□□□ -0.17
PCDH9-204ENST00000544246 TNNT2P45379 298 aaPredicted RBP13.97□□□□□ -0.17
PCDH9-204ENST00000544246 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.96□□□□□ -0.17
PCDH9-204ENST00000544246 ESF1Q9H501 851 aaKnown RBP13.92□□□□□ -0.18
PCDH9-204ENST00000544246 NCLP19338 710 aaKnown RBP13.92□□□□□ -0.18
PCDH9-204ENST00000544246 TRIM44Q96DX7 344 aaPredicted RBP13.9□□□□□ -0.18
PCDH9-204ENST00000544246 NPM1P06748 294 aaKnown RBP eCLIP13.88□□□□□ -0.19
PCDH9-204ENST00000544246 STAG3Q9UJ98 1225 aa13.88□□□□□ -0.19
PCDH9-204ENST00000544246 CCDC136Q96JN2 1154 aa13.88□□□□□ -0.19
PCDH9-204ENST00000544246 MYH16Q9H6N6 1097 aa13.88□□□□□ -0.19
PCDH9-204ENST00000544246 HNRNPUQ00839 825 aaKnown RBP eCLIP13.86□□□□□ -0.19
PCDH9-204ENST00000544246 FAM9BQ8IZU0 186 aa13.84□□□□□ -0.19
PCDH9-204ENST00000544246 ZNF777Q9ULD5 760 aaPredicted RBP13.84□□□□□ -0.19
PCDH9-204ENST00000544246 CHGAP10645 457 aaKnown RBP13.84□□□□□ -0.19
PCDH9-204ENST00000544246 ANP32EQ9BTT0 268 aa13.83□□□□□ -0.2
PCDH9-204ENST00000544246 SALL2Q9Y467 1007 aaPredicted RBP13.82□□□□□ -0.2
PCDH9-204ENST00000544246 GOLGA6L22H0YM25 854 aa13.82□□□□□ -0.2
PCDH9-204ENST00000544246 ZRSR1Q15695 479 aaKnown RBP13.82□□□□□ -0.2
PCDH9-204ENST00000544246 BECN1Q14457 450 aa13.81□□□□□ -0.2
PCDH9-204ENST00000544246 PTMAP06454 111 aaKnown RBP13.8□□□□□ -0.2
PCDH9-204ENST00000544246 WDR43Q15061 677 aaKnown RBP eCLIP13.8□□□□□ -0.2
PCDH9-204ENST00000544246 DDRGK1Q96HY6 314 aa13.8□□□□□ -0.2
PCDH9-204ENST00000544246 ARID3CA6NKF2 412 aa13.78□□□□□ -0.2
PCDH9-204ENST00000544246 TONSLQ96HA7 1378 aa13.77□□□□□ -0.2
PCDH9-204ENST00000544246 DNTTIP2Q5QJE6 756 aaKnown RBP13.77□□□□□ -0.21
PCDH9-204ENST00000544246 PLPPR3Q6T4P5 718 aa13.76□□□□□ -0.21
PCDH9-204ENST00000544246 CHMP7Q8WUX9 453 aaPredicted RBP13.76□□□□□ -0.21
PCDH9-204ENST00000544246 TMC1Q8TDI8 760 aa13.75□□□□□ -0.21
PCDH9-204ENST00000544246 A0A0G2JS52 829 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms