RNA–Protein interactions for RNA: ENST00000525209.5

CD44-213, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 574 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-213ENST00000525209 C8orf48Q96LL4 319 aa5.89□□□□□ -1.47
CD44-213ENST00000525209 FRMD6Q96NE9 622 aa5.89□□□□□ -1.47
CD44-213ENST00000525209 SENP7Q9BQF6 1050 aa5.89□□□□□ -1.47
CD44-213ENST00000525209 RBCK1Q9BYM8 510 aa5.89□□□□□ -1.47
CD44-213ENST00000525209 QTRT2Q9H974 415 aaKnown RBP5.89□□□□□ -1.47
CD44-213ENST00000525209 CXXC1Q9P0U4 656 aaPredicted RBP5.89□□□□□ -1.47
CD44-213ENST00000525209 PRMT3O60678 531 aa5.88□□□□□ -1.47
CD44-213ENST00000525209 PRPF40AO75400 957 aaKnown RBP5.88□□□□□ -1.47
CD44-213ENST00000525209 FMNL1O95466 1100 aaPredicted RBP5.88□□□□□ -1.47
CD44-213ENST00000525209 FGRP09769 529 aa5.88□□□□□ -1.47
CD44-213ENST00000525209 GYS2P54840 703 aa5.88□□□□□ -1.47
CD44-213ENST00000525209 EVA1CP58658 441 aa5.88□□□□□ -1.47
CD44-213ENST00000525209 DAB2P98082 770 aa5.88□□□□□ -1.47
CD44-213ENST00000525209 FMR1Q06787 632 aaKnown RBP eCLIP5.88□□□□□ -1.47
CD44-213ENST00000525209 NR1H3Q13133 447 aa5.88□□□□□ -1.47
CD44-213ENST00000525209 OCLNQ16625 522 aa5.88□□□□□ -1.47
CD44-213ENST00000525209 PUS10Q3MIT2 529 aaKnown RBP5.88□□□□□ -1.47
CD44-213ENST00000525209 KMT5BQ4FZB7 885 aa5.88□□□□□ -1.47
CD44-213ENST00000525209 FAM43BQ6ZT52 329 aaPredicted RBP5.88□□□□□ -1.47
CD44-213ENST00000525209 TMC7Q7Z402 723 aa5.88□□□□□ -1.47
CD44-213ENST00000525209 FAM174AQ8TBP5 190 aa5.88□□□□□ -1.47
CD44-213ENST00000525209 GTF3C2Q8WUA4 911 aaPredicted RBP5.88□□□□□ -1.47
CD44-213ENST00000525209 PRR14Q9BWN1 585 aa5.88□□□□□ -1.47
CD44-213ENST00000525209 CCDC189A1A4V9 331 aa5.87□□□□□ -1.47
CD44-213ENST00000525209 K7ELQ4 463 aaPredicted RBP5.87□□□□□ -1.47
CD44-213ENST00000525209 TREHO43280 583 aa5.87□□□□□ -1.47
CD44-213ENST00000525209 ACTN4O43707 911 aaKnown RBP5.87□□□□□ -1.47
CD44-213ENST00000525209 VIL1P09327 827 aaKnown RBP5.87□□□□□ -1.47
CD44-213ENST00000525209 PDE3BQ13370 1112 aa5.87□□□□□ -1.47
CD44-213ENST00000525209 UBE4AQ14139 1066 aa5.87□□□□□ -1.47
CD44-213ENST00000525209 WDR78Q5VTH9 848 aa5.87□□□□□ -1.47
CD44-213ENST00000525209 Q6ZNB5 142 aa5.87□□□□□ -1.47
CD44-213ENST00000525209 VPS37DQ86XT2 251 aa5.87□□□□□ -1.47
CD44-213ENST00000525209 MKL1Q969V6 931 aa5.87□□□□□ -1.47
CD44-213ENST00000525209 DUSP9Q99956 384 aaKnown RBP5.87□□□□□ -1.47
CD44-213ENST00000525209 PCGF6Q9BYE7 350 aa5.87□□□□□ -1.47
CD44-213ENST00000525209 JADE2Q9NQC1 790 aa5.87□□□□□ -1.47
CD44-213ENST00000525209 VTI1BQ9UEU0 232 aa5.87□□□□□ -1.47
CD44-213ENST00000525209 TCEAL9Q9UHQ7 104 aa5.87□□□□□ -1.47
CD44-213ENST00000525209 DNMT3AQ9Y6K1 912 aaPredicted RBP5.87□□□□□ -1.47
CD44-213ENST00000525209 PPEF1O14829 653 aaPredicted RBP5.86□□□□□ -1.47
CD44-213ENST00000525209 KIF4AO95239 1232 aa5.86□□□□□ -1.47
CD44-213ENST00000525209 LDHBP07195 334 aaKnown RBP5.86□□□□□ -1.47
CD44-213ENST00000525209 FDX1P10109 184 aa5.86□□□□□ -1.47
CD44-213ENST00000525209 LIG1P18858 919 aa5.86□□□□□ -1.47
CD44-213ENST00000525209 BDNFP23560 247 aa5.86□□□□□ -1.47
CD44-213ENST00000525209 OS9Q13438 667 aaPredicted RBP5.86□□□□□ -1.47
CD44-213ENST00000525209 SERINC3Q13530 473 aa5.86□□□□□ -1.47
CD44-213ENST00000525209 NCOA4Q13772 614 aa5.86□□□□□ -1.47
CD44-213ENST00000525209 ODR4Q5SWX8 454 aa5.86□□□□□ -1.47
CD44-213ENST00000525209 CCSAPQ6IQ19 270 aaPredicted RBP5.86□□□□□ -1.47
CD44-213ENST00000525209 ZNF654Q8IZM8 581 aa5.86□□□□□ -1.47
CD44-213ENST00000525209 RDH13Q8NBN7 331 aa5.86□□□□□ -1.47
CD44-213ENST00000525209 RELTQ969Z4 430 aa5.86□□□□□ -1.47
CD44-213ENST00000525209 RNPC3Q96LT9 517 aaKnown RBP5.86□□□□□ -1.47
CD44-213ENST00000525209 DDX41Q9UJV9 622 aaKnown RBP5.86□□□□□ -1.47
CD44-213ENST00000525209 WWC3Q9ULE0 1092 aa5.86□□□□□ -1.47
CD44-213ENST00000525209 TTF2Q9UNY4 1162 aaKnown RBP5.86□□□□□ -1.47
CD44-213ENST00000525209 DDX11L8A8MPP1 907 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 RNF223E7ERA6 249 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 CCER2I3L3R5 266 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 GFRA3O60609 400 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 S1PR4O95977 384 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 NR6A1Q15406 480 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 MAP9Q49MG5 647 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 NBPF6Q5VWK0 638 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 AMOTL1Q8IY63 956 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 OGFOD1Q8N543 542 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 PRPF38AQ8NAV1 312 aaKnown RBP5.85□□□□□ -1.47
CD44-213ENST00000525209 IL17RAQ96F46 866 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 PRIMPOLQ96LW4 560 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 NBPF4Q96M43 638 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 IER2Q9BTL4 223 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 RNF19AQ9NV58 838 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 SEPT3Q9UH03 358 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 PCDHGC3Q9UN70 934 aa5.85□□□□□ -1.47
CD44-213ENST00000525209 GIGYF1O75420 1035 aaPredicted RBP5.84□□□□□ -1.47
CD44-213ENST00000525209 GGCXP38435 758 aa5.84□□□□□ -1.47
CD44-213ENST00000525209 RACK1P63244 317 aaKnown RBP5.84□□□□□ -1.47
CD44-213ENST00000525209 PSMD2Q13200 908 aa5.84□□□□□ -1.47
CD44-213ENST00000525209 SWAP70Q9UH65 585 aa5.84□□□□□ -1.47
CD44-213ENST00000525209 FBXO9Q9UK97 447 aaPredicted RBP5.84□□□□□ -1.47
CD44-213ENST00000525209 EMILIN1Q9Y6C2 1016 aa5.84□□□□□ -1.47
CD44-213ENST00000525209 CFAP99D6REC4 459 aa5.83□□□□□ -1.48
CD44-213ENST00000525209 LCE2BO14633 110 aa5.83□□□□□ -1.48
CD44-213ENST00000525209 DKK1O94907 266 aa5.83□□□□□ -1.48
CD44-213ENST00000525209 FBXO45P0C2W1 286 aa5.83□□□□□ -1.48
CD44-213ENST00000525209 USP46P62068 366 aa5.83□□□□□ -1.48
CD44-213ENST00000525209 MTMR2Q13614 643 aa5.83□□□□□ -1.48
CD44-213ENST00000525209 MTMR3Q13615 1198 aa5.83□□□□□ -1.48
CD44-213ENST00000525209 AAMPQ13685 434 aa5.83□□□□□ -1.48
CD44-213ENST00000525209 MYBPC2Q14324 1141 aa5.83□□□□□ -1.48
CD44-213ENST00000525209 DHX8Q14562 1220 aaKnown RBP5.83□□□□□ -1.48
CD44-213ENST00000525209 DSC3Q14574 896 aa5.83□□□□□ -1.48
CD44-213ENST00000525209 SCUBE3Q8IX30 993 aa5.83□□□□□ -1.48
CD44-213ENST00000525209 CKAP2LQ8IYA6 745 aa5.83□□□□□ -1.48
CD44-213ENST00000525209 CACTIN-AS1Q8N1I8 211 aa5.83□□□□□ -1.48
CD44-213ENST00000525209 EMID1Q96A84 441 aaPredicted RBP5.83□□□□□ -1.48
CD44-213ENST00000525209 CCDC85AQ96PX6 553 aaPredicted RBP5.83□□□□□ -1.48
CD44-213ENST00000525209 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms