RNA–Protein interactions for RNA: ENST00000525209.5

CD44-213, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 574 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-213ENST00000525209 AEBP2Q6ZN18 517 aaPredicted RBP15.23■□□□□ 0.03
CD44-213ENST00000525209 CHIC1Q5VXU3 224 aa14.51□□□□□ -0.09
CD44-213ENST00000525209 SENP3Q9H4L4 574 aaPredicted RBP12.88□□□□□ -0.35
CD44-213ENST00000525209 PHF23Q9BUL5 403 aaPredicted RBP12.78□□□□□ -0.36
CD44-213ENST00000525209 FOXD1Q16676 465 aa12.06□□□□□ -0.48
CD44-213ENST00000525209 PLPPR3Q6T4P5 718 aa11.62□□□□□ -0.55
CD44-213ENST00000525209 PPP6R1Q9UPN7 881 aa11.4□□□□□ -0.58
CD44-213ENST00000525209 ADRA2BP18089 450 aa11.37□□□□□ -0.59
CD44-213ENST00000525209 PIAS4Q8N2W9 510 aaPredicted RBP11.29□□□□□ -0.6
CD44-213ENST00000525209 MSH5O43196 834 aa11.16□□□□□ -0.62
CD44-213ENST00000525209 POTEDQ86YR6 584 aa10.78□□□□□ -0.68
CD44-213ENST00000525209 MAPK8IP2Q13387 824 aaPredicted RBP10.43□□□□□ -0.74
CD44-213ENST00000525209 SCAF1Q9H7N4 1312 aaKnown RBP10.29□□□□□ -0.76
CD44-213ENST00000525209 DMRT2Q9Y5R5 561 aa10.25□□□□□ -0.77
CD44-213ENST00000525209 PPP4R3CPQ6ZMV5 832 aa10.23□□□□□ -0.77
CD44-213ENST00000525209 SLC24A1O60721 1099 aa10.05□□□□□ -0.8
CD44-213ENST00000525209 CNKSR2Q8WXI2 1034 aa9.98□□□□□ -0.81
CD44-213ENST00000525209 DCAF8L1A6NGE4 600 aa9.9□□□□□ -0.82
CD44-213ENST00000525209 HOXD11P31277 338 aaPredicted RBP9.9□□□□□ -0.82
CD44-213ENST00000525209 EHMT2Q96KQ7 1210 aa9.86□□□□□ -0.83
CD44-213ENST00000525209 RNF216Q9NWF9 866 aaPredicted RBP9.85□□□□□ -0.83
CD44-213ENST00000525209 NCBP3Q53F19 620 aaKnown RBP9.82□□□□□ -0.84
CD44-213ENST00000525209 NPM3O75607 178 aaKnown RBP9.74□□□□□ -0.85
CD44-213ENST00000525209 KCNA4P22459 653 aa9.7□□□□□ -0.86
CD44-213ENST00000525209 CACNB1Q02641 598 aaPredicted RBP9.57□□□□□ -0.88
CD44-213ENST00000525209 RNF39Q9H2S5 420 aa9.57□□□□□ -0.88
CD44-213ENST00000525209 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.48□□□□□ -0.89
CD44-213ENST00000525209 DNAJC5BQ9UF47 199 aa9.45□□□□□ -0.9
CD44-213ENST00000525209 C1QBPQ07021 282 aaKnown RBP9.4□□□□□ -0.9
CD44-213ENST00000525209 CSRNP3Q8WYN3 585 aa9.35□□□□□ -0.91
CD44-213ENST00000525209 RTN4Q9NQC3 1192 aaKnown RBP9.31□□□□□ -0.92
CD44-213ENST00000525209 U3KPZ7 1027 aaPredicted RBP9.3□□□□□ -0.92
CD44-213ENST00000525209 SLC4A2P04920 1241 aa9.29□□□□□ -0.92
CD44-213ENST00000525209 AMER1Q5JTC6 1135 aaPredicted RBP9.28□□□□□ -0.92
CD44-213ENST00000525209 SPINK5Q9NQ38 1064 aaPredicted RBP9.16□□□□□ -0.94
CD44-213ENST00000525209 SLC4A1APQ9BWU0 796 aaKnown RBP9.14□□□□□ -0.95
CD44-213ENST00000525209 CAPN15O75808 1086 aa9.12□□□□□ -0.95
CD44-213ENST00000525209 DSG3P32926 999 aa9.02□□□□□ -0.97
CD44-213ENST00000525209 TRHP20396 242 aaPredicted RBP9.01□□□□□ -0.97
CD44-213ENST00000525209 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.98□□□□□ -0.97
CD44-213ENST00000525209 HNRNPUL2Q1KMD3 747 aaKnown RBP8.98□□□□□ -0.97
CD44-213ENST00000525209 MYCNP04198 464 aaPredicted RBP8.97□□□□□ -0.97
CD44-213ENST00000525209 ABCB7O75027 752 aa8.96□□□□□ -0.98
CD44-213ENST00000525209 SAMD1Q6SPF0 538 aaPredicted RBP8.96□□□□□ -0.98
CD44-213ENST00000525209 FOXD4L1Q9NU39 408 aa8.95□□□□□ -0.98
CD44-213ENST00000525209 ZBTB22O15209 634 aa8.94□□□□□ -0.98
CD44-213ENST00000525209 APLP2Q06481 763 aa8.93□□□□□ -0.98
CD44-213ENST00000525209 ZNF219Q9P2Y4 722 aaPredicted RBP8.92□□□□□ -0.98
CD44-213ENST00000525209 DAXXQ9UER7 740 aaPredicted RBP8.86□□□□□ -0.99
CD44-213ENST00000525209 ATF5Q9Y2D1 282 aaPredicted RBP8.85□□□□□ -0.99
CD44-213ENST00000525209 POLA2Q14181 598 aa8.78□□□□□ -1
CD44-213ENST00000525209 PRKCSHP14314 528 aaPredicted RBP8.69□□□□□ -1.02
CD44-213ENST00000525209 ATXN8OSP0DMR3 200 aa8.6□□□□□ -1.03
CD44-213ENST00000525209 BCANQ96GW7 911 aa8.57□□□□□ -1.04
CD44-213ENST00000525209 ARXQ96QS3 562 aa8.57□□□□□ -1.04
CD44-213ENST00000525209 TAOK2Q9UL54 1235 aa8.57□□□□□ -1.04
CD44-213ENST00000525209 RBM42Q9BTD8 480 aaKnown RBP8.53□□□□□ -1.04
CD44-213ENST00000525209 OSCARQ8IYS5 282 aa8.52□□□□□ -1.05
CD44-213ENST00000525209 ZBTB12Q9Y330 459 aaPredicted RBP8.52□□□□□ -1.05
CD44-213ENST00000525209 PLCB2Q00722 1185 aa8.5□□□□□ -1.05
CD44-213ENST00000525209 POTEHQ6S545 545 aa8.46□□□□□ -1.06
CD44-213ENST00000525209 TIMELESSQ9UNS1 1208 aa8.44□□□□□ -1.06
CD44-213ENST00000525209 MKRN4PQ13434 485 aaPredicted RBP8.42□□□□□ -1.06
CD44-213ENST00000525209 FBLN2P98095 1184 aa8.4□□□□□ -1.06
CD44-213ENST00000525209 TPRNQ4KMQ1 711 aa8.39□□□□□ -1.07
CD44-213ENST00000525209 AKT1S1Q96B36 256 aa8.38□□□□□ -1.07
CD44-213ENST00000525209 HAP1P54257 671 aaPredicted RBP8.36□□□□□ -1.07
CD44-213ENST00000525209 FKBP8Q14318 412 aa8.36□□□□□ -1.07
CD44-213ENST00000525209 CHRDL2Q6WN34 429 aa8.36□□□□□ -1.07
CD44-213ENST00000525209 TULP1O00294 542 aaPredicted RBP8.35□□□□□ -1.07
CD44-213ENST00000525209 REM2Q8IYK8 340 aaPredicted RBP8.35□□□□□ -1.07
CD44-213ENST00000525209 SPDYE2BA6NHP3 402 aa8.3□□□□□ -1.08
CD44-213ENST00000525209 SPDYE6P0CI01 402 aa8.3□□□□□ -1.08
CD44-213ENST00000525209 SPDYE2Q495Y8 402 aa8.3□□□□□ -1.08
CD44-213ENST00000525209 HOMEZQ8IX15 550 aa8.29□□□□□ -1.08
CD44-213ENST00000525209 VSIG10Q8N0Z9 540 aa8.29□□□□□ -1.08
CD44-213ENST00000525209 PITPNM1O00562 1244 aa8.27□□□□□ -1.09
CD44-213ENST00000525209 ERICH6Q7L0X2 663 aa8.26□□□□□ -1.09
CD44-213ENST00000525209 ZNF692Q9BU19 519 aaPredicted RBP8.25□□□□□ -1.09
CD44-213ENST00000525209 GTF3C3Q9Y5Q9 886 aa8.23□□□□□ -1.09
CD44-213ENST00000525209 SSUH2Q9Y2M2 353 aa8.22□□□□□ -1.09
CD44-213ENST00000525209 PIP4P2Q8N4L2 257 aa8.2□□□□□ -1.1
CD44-213ENST00000525209 CLEC11AQ9Y240 323 aa8.18□□□□□ -1.1
CD44-213ENST00000525209 PABPN1Q86U42 306 aaKnown RBP eCLIP8.15□□□□□ -1.1
CD44-213ENST00000525209 RANGAP1P46060 587 aaPredicted RBP8.14□□□□□ -1.11
CD44-213ENST00000525209 FXR2P51116 673 aaKnown RBP eCLIP8.14□□□□□ -1.11
CD44-213ENST00000525209 SPDYE1Q8NFV5 336 aaPredicted RBP8.13□□□□□ -1.11
CD44-213ENST00000525209 KDM2AQ9Y2K7 1162 aa8.08□□□□□ -1.12
CD44-213ENST00000525209 PRKAR2AP13861 404 aaKnown RBP8.06□□□□□ -1.12
CD44-213ENST00000525209 SPDYE4A6NLX3 237 aa8.05□□□□□ -1.12
CD44-213ENST00000525209 HAX1O00165 279 aa8.04□□□□□ -1.12
CD44-213ENST00000525209 TMEM132AQ24JP5 1023 aa8.04□□□□□ -1.12
CD44-213ENST00000525209 CHADLQ6NUI6 762 aa8.04□□□□□ -1.12
CD44-213ENST00000525209 PRR29P0C7W0 189 aa8.02□□□□□ -1.13
CD44-213ENST00000525209 PODXL2Q9NZ53 605 aa7.99□□□□□ -1.13
CD44-213ENST00000525209 EVX2Q03828 476 aa7.98□□□□□ -1.13
CD44-213ENST00000525209 SP7Q8TDD2 431 aaPredicted RBP7.97□□□□□ -1.13
CD44-213ENST00000525209 DCAF8L2P0C7V8 631 aa7.96□□□□□ -1.14
CD44-213ENST00000525209 C14orf37Q86TY3 774 aa7.96□□□□□ -1.14
CD44-213ENST00000525209 C19orf67A6NJJ6 358 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms