RNA–Protein interactions for RNA: ENST00000488072.1

SHROOM1-205, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 423 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-205ENST00000488072 CFAP44Q96MT7 982 aa22.4■■□□□ 1.18
SHROOM1-205ENST00000488072 CCDC87Q9NVE4 849 aa22.4■■□□□ 1.18
SHROOM1-205ENST00000488072 SNRPA1P09661 255 aaKnown RBP22.39■■□□□ 1.17
SHROOM1-205ENST00000488072 RC3H1Q5TC82 1133 aaKnown RBP22.39■■□□□ 1.17
SHROOM1-205ENST00000488072 MSL1Q68DK7 614 aa22.39■■□□□ 1.17
SHROOM1-205ENST00000488072 NECTIN2Q92692 538 aa22.39■■□□□ 1.17
SHROOM1-205ENST00000488072 RPS6KA4O75676 772 aa22.38■■□□□ 1.17
SHROOM1-205ENST00000488072 ARHGEF1Q92888 912 aaKnown RBP22.38■■□□□ 1.17
SHROOM1-205ENST00000488072 IFT57Q9NWB7 429 aa22.38■■□□□ 1.17
SHROOM1-205ENST00000488072 ZNF831Q5JPB2 1677 aa22.38■■□□□ 1.17
SHROOM1-205ENST00000488072 CASZ1Q86V15 1759 aa22.38■■□□□ 1.17
SHROOM1-205ENST00000488072 NBPF26B4DH59 902 aa22.37■■□□□ 1.17
SHROOM1-205ENST00000488072 ELL2O00472 640 aaPredicted RBP22.37■■□□□ 1.17
SHROOM1-205ENST00000488072 NBPF10Q6P3W6 841 aaKnown RBP22.37■■□□□ 1.17
SHROOM1-205ENST00000488072 NBPF15Q8N660 670 aa22.37■■□□□ 1.17
SHROOM1-205ENST00000488072 SRP68Q9UHB9 627 aaKnown RBP22.37■■□□□ 1.17
SHROOM1-205ENST00000488072 RTCBQ9Y3I0 505 aaKnown RBP22.37■■□□□ 1.17
SHROOM1-205ENST00000488072 ZNF521Q96K83 1311 aa22.36■■□□□ 1.17
SHROOM1-205ENST00000488072 C8orf58Q8NAV2 365 aa22.36■■□□□ 1.17
SHROOM1-205ENST00000488072 ZNF330Q9Y3S2 320 aaPredicted RBP22.36■■□□□ 1.17
SHROOM1-205ENST00000488072 UBR3Q6ZT12 1888 aa22.36■■□□□ 1.17
SHROOM1-205ENST00000488072 CICQ96RK0 1608 aaPredicted RBP22.35■■□□□ 1.17
SHROOM1-205ENST00000488072 SOS1Q07889 1333 aaPredicted RBP22.35■■□□□ 1.17
SHROOM1-205ENST00000488072 STARD3NLO95772 234 aa22.35■■□□□ 1.17
SHROOM1-205ENST00000488072 ANXA1P04083 346 aa22.35■■□□□ 1.17
SHROOM1-205ENST00000488072 EIF2S2P20042 333 aaKnown RBP22.35■■□□□ 1.17
SHROOM1-205ENST00000488072 GNAI1P63096 354 aa22.35■■□□□ 1.17
SHROOM1-205ENST00000488072 BABAM1Q9NWV8 329 aa22.35■■□□□ 1.17
SHROOM1-205ENST00000488072 TRAPPC3LQ5T215 181 aa22.34■■□□□ 1.17
SHROOM1-205ENST00000488072 TSPYL6Q8N831 410 aa22.34■■□□□ 1.17
SHROOM1-205ENST00000488072 SSFA2P28290 1259 aa22.33■■□□□ 1.17
SHROOM1-205ENST00000488072 NCBP3Q53F19 620 aaKnown RBP22.33■■□□□ 1.17
SHROOM1-205ENST00000488072 CDCA7LQ96GN5 454 aa22.33■■□□□ 1.17
SHROOM1-205ENST00000488072 PROSER3Q2NL68 480 aa22.32■■□□□ 1.16
SHROOM1-205ENST00000488072 DUSP27Q5VZP5 1158 aa22.32■■□□□ 1.16
SHROOM1-205ENST00000488072 WDR63Q8IWG1 891 aa22.32■■□□□ 1.16
SHROOM1-205ENST00000488072 NGEFQ8N5V2 710 aa22.32■■□□□ 1.16
SHROOM1-205ENST00000488072 TEX13AQ9BXU3 409 aaPredicted RBP22.32■■□□□ 1.16
SHROOM1-205ENST00000488072 FANCIQ9NVI1 1328 aa22.31■■□□□ 1.16
SHROOM1-205ENST00000488072 PTGER2P43116 358 aa22.31■■□□□ 1.16
SHROOM1-205ENST00000488072 EIF5P55010 431 aaKnown RBP22.31■■□□□ 1.16
SHROOM1-205ENST00000488072 CALD1Q05682 793 aaKnown RBP22.31■■□□□ 1.16
SHROOM1-205ENST00000488072 TCERG1O14776 1098 aaKnown RBP22.3■■□□□ 1.16
SHROOM1-205ENST00000488072 TBC1D2BQ9UPU7 963 aa22.3■■□□□ 1.16
SHROOM1-205ENST00000488072 IL16Q14005 1332 aa22.3■■□□□ 1.16
SHROOM1-205ENST00000488072 MYL6BP14649 208 aa22.29■■□□□ 1.16
SHROOM1-205ENST00000488072 PDIA6Q15084 440 aa22.29■■□□□ 1.16
SHROOM1-205ENST00000488072 COL15A1P39059 1388 aa22.28■■□□□ 1.16
SHROOM1-205ENST00000488072 HNRNPUQ00839 825 aaKnown RBP eCLIP22.28■■□□□ 1.16
SHROOM1-205ENST00000488072 ARXQ96QS3 562 aa22.28■■□□□ 1.16
SHROOM1-205ENST00000488072 SGIP1Q9BQI5 828 aa22.28■■□□□ 1.16
SHROOM1-205ENST00000488072 MTFR1LQ9H019 292 aa22.28■■□□□ 1.16
SHROOM1-205ENST00000488072 BCL2L12Q9HB09 334 aa22.28■■□□□ 1.16
SHROOM1-205ENST00000488072 QSER1Q2KHR3 1735 aa22.28■■□□□ 1.16
SHROOM1-205ENST00000488072 GYS1P13807 737 aa22.27■■□□□ 1.16
SHROOM1-205ENST00000488072 RFC4P35249 363 aa22.27■■□□□ 1.16
SHROOM1-205ENST00000488072 EXOSC9Q06265 439 aaKnown RBP22.27■■□□□ 1.16
SHROOM1-205ENST00000488072 USPL1Q5W0Q7 1092 aa22.27■■□□□ 1.16
SHROOM1-205ENST00000488072 FLAD1Q8NFF5 587 aa22.27■■□□□ 1.16
SHROOM1-205ENST00000488072 FKBP8Q14318 412 aa22.26■■□□□ 1.15
SHROOM1-205ENST00000488072 TTLL7Q6ZT98 887 aa22.26■■□□□ 1.15
SHROOM1-205ENST00000488072 SPON1Q9HCB6 807 aa22.26■■□□□ 1.15
SHROOM1-205ENST00000488072 IL6STP40189 918 aaPredicted RBP22.25■■□□□ 1.15
SHROOM1-205ENST00000488072 LRP10Q7Z4F1 713 aa22.25■■□□□ 1.15
SHROOM1-205ENST00000488072 CHPF2Q9P2E5 772 aa22.25■■□□□ 1.15
SHROOM1-205ENST00000488072 USP42Q9H9J4 1324 aaKnown RBP22.25■■□□□ 1.15
SHROOM1-205ENST00000488072 C4AP0C0L4 1744 aa22.24■■□□□ 1.15
SHROOM1-205ENST00000488072 ADRA2BP18089 450 aa22.24■■□□□ 1.15
SHROOM1-205ENST00000488072 HDGFL1Q5TGJ6 251 aa22.24■■□□□ 1.15
SHROOM1-205ENST00000488072 LAMB4A4D0S4 1761 aa22.23■■□□□ 1.15
SHROOM1-205ENST00000488072 GOLGA2Q08379 1002 aa22.23■■□□□ 1.15
SHROOM1-205ENST00000488072 SLFN5Q08AF3 891 aa22.23■■□□□ 1.15
SHROOM1-205ENST00000488072 SLC16A10Q8TF71 515 aa22.23■■□□□ 1.15
SHROOM1-205ENST00000488072 CAMTA2O94983 1202 aa22.22■■□□□ 1.15
SHROOM1-205ENST00000488072 NARFQ9UHQ1 456 aa22.22■■□□□ 1.15
SHROOM1-205ENST00000488072 HMGB2P26583 209 aaKnown RBP22.21■■□□□ 1.15
SHROOM1-205ENST00000488072 DZIP3Q86Y13 1208 aaKnown RBP22.21■■□□□ 1.15
SHROOM1-205ENST00000488072 HLFQ16534 295 aa22.2■■□□□ 1.14
SHROOM1-205ENST00000488072 TWISTNBQ3B726 338 aaPredicted RBP22.2■■□□□ 1.14
SHROOM1-205ENST00000488072 BICDL1Q6ZP65 573 aa22.2■■□□□ 1.14
SHROOM1-205ENST00000488072 ZPR1O75312 459 aa22.19■■□□□ 1.14
SHROOM1-205ENST00000488072 VAMP4O75379 141 aa22.19■■□□□ 1.14
SHROOM1-205ENST00000488072 MMP10P09238 476 aa22.19■■□□□ 1.14
SHROOM1-205ENST00000488072 DDR1Q08345 913 aa22.19■■□□□ 1.14
SHROOM1-205ENST00000488072 AIMP1Q12904 312 aaKnown RBP22.19■■□□□ 1.14
SHROOM1-205ENST00000488072 XAGE3Q8WTP9 111 aa22.18■■□□□ 1.14
SHROOM1-205ENST00000488072 ZBTB3Q9H5J0 574 aa22.18■■□□□ 1.14
SHROOM1-205ENST00000488072 MYH16Q9H6N6 1097 aa22.18■■□□□ 1.14
SHROOM1-205ENST00000488072 PHAXQ9H814 394 aaKnown RBP22.18■■□□□ 1.14
SHROOM1-205ENST00000488072 A0A087WZG4 1122 aa22.17■■□□□ 1.14
SHROOM1-205ENST00000488072 HOXB7P09629 217 aa22.17■■□□□ 1.14
SHROOM1-205ENST00000488072 NFIXQ14938 502 aa22.17■■□□□ 1.14
SHROOM1-205ENST00000488072 TBC1D9BQ66K14 1250 aa22.17■■□□□ 1.14
SHROOM1-205ENST00000488072 COPS6Q7L5N1 327 aa22.17■■□□□ 1.14
SHROOM1-205ENST00000488072 TRMT2AQ8IZ69 625 aaKnown RBP22.17■■□□□ 1.14
SHROOM1-205ENST00000488072 ZNF428Q96B54 188 aa22.17■■□□□ 1.14
SHROOM1-205ENST00000488072 DDX21Q9NR30 783 aaKnown RBP eCLIP22.17■■□□□ 1.14
SHROOM1-205ENST00000488072 E9PSI1 815 aa22.16■■□□□ 1.14
SHROOM1-205ENST00000488072 G2E3Q7L622 706 aa22.16■■□□□ 1.14
SHROOM1-205ENST00000488072 KLHL34Q8N239 644 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms