RNA–Protein interactions for RNA: ENST00000485780.1

SHROOM3-207, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 531 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-207ENST00000485780 RBM42Q9BTD8 480 aaKnown RBP12.18□□□□□ -0.46
SHROOM3-207ENST00000485780 KCNQ3O43525 872 aa12.17□□□□□ -0.46
SHROOM3-207ENST00000485780 MSL1Q68DK7 614 aa12.17□□□□□ -0.46
SHROOM3-207ENST00000485780 TTC5Q8N0Z6 440 aa12.17□□□□□ -0.46
SHROOM3-207ENST00000485780 LINC00116Q8NCU8 138 aa12.17□□□□□ -0.46
SHROOM3-207ENST00000485780 ZNF496Q96IT1 587 aaPredicted RBP12.17□□□□□ -0.46
SHROOM3-207ENST00000485780 SSFA2P28290 1259 aa12.16□□□□□ -0.46
SHROOM3-207ENST00000485780 EIF4A1P60842 406 aaKnown RBP12.16□□□□□ -0.46
SHROOM3-207ENST00000485780 GNAI1P63096 354 aa12.16□□□□□ -0.46
SHROOM3-207ENST00000485780 ITPK1Q13572 414 aa12.16□□□□□ -0.46
SHROOM3-207ENST00000485780 FMNL2Q96PY5 1086 aa12.16□□□□□ -0.46
SHROOM3-207ENST00000485780 C4AP0C0L4 1744 aa12.15□□□□□ -0.46
SHROOM3-207ENST00000485780 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.15□□□□□ -0.46
SHROOM3-207ENST00000485780 GNPATO15228 680 aa12.15□□□□□ -0.46
SHROOM3-207ENST00000485780 PTCD1O75127 700 aaKnown RBP12.15□□□□□ -0.46
SHROOM3-207ENST00000485780 MBIPQ9NS73 344 aa12.15□□□□□ -0.46
SHROOM3-207ENST00000485780 TSPYL4Q9UJ04 414 aa12.15□□□□□ -0.46
SHROOM3-207ENST00000485780 CNTNAP4Q9C0A0 1308 aa12.14□□□□□ -0.47
SHROOM3-207ENST00000485780 SENP3-EIF4A1A0A087X0R7 540 aa12.14□□□□□ -0.47
SHROOM3-207ENST00000485780 YY1P25490 414 aa12.14□□□□□ -0.47
SHROOM3-207ENST00000485780 CACNB1Q02641 598 aaPredicted RBP12.14□□□□□ -0.47
SHROOM3-207ENST00000485780 MIS18AQ9NYP9 233 aa12.14□□□□□ -0.47
SHROOM3-207ENST00000485780 CACNA1FO60840 1977 aa12.14□□□□□ -0.47
SHROOM3-207ENST00000485780 COL24A1Q17RW2 1714 aa12.14□□□□□ -0.47
SHROOM3-207ENST00000485780 ZBED9Q6R2W3 1325 aa12.13□□□□□ -0.47
SHROOM3-207ENST00000485780 GIGYF1O75420 1035 aaPredicted RBP12.13□□□□□ -0.47
SHROOM3-207ENST00000485780 HOXB7P09629 217 aa12.13□□□□□ -0.47
SHROOM3-207ENST00000485780 RC3H1Q5TC82 1133 aaKnown RBP12.13□□□□□ -0.47
SHROOM3-207ENST00000485780 PELP1Q8IZL8 1130 aaKnown RBP12.13□□□□□ -0.47
SHROOM3-207ENST00000485780 SPINK5Q9NQ38 1064 aaPredicted RBP12.13□□□□□ -0.47
SHROOM3-207ENST00000485780 RTCBQ9Y3I0 505 aaKnown RBP12.13□□□□□ -0.47
SHROOM3-207ENST00000485780 SOS1Q07889 1333 aaPredicted RBP12.12□□□□□ -0.47
SHROOM3-207ENST00000485780 FANCIQ9NVI1 1328 aa12.12□□□□□ -0.47
SHROOM3-207ENST00000485780 SNRPA1P09661 255 aaKnown RBP12.12□□□□□ -0.47
SHROOM3-207ENST00000485780 CYP19A1P11511 503 aaPredicted RBP12.12□□□□□ -0.47
SHROOM3-207ENST00000485780 GPR162Q16538 588 aa12.12□□□□□ -0.47
SHROOM3-207ENST00000485780 SMIM5Q71RC9 77 aa12.12□□□□□ -0.47
SHROOM3-207ENST00000485780 AMIGO3Q86WK7 504 aa12.12□□□□□ -0.47
SHROOM3-207ENST00000485780 DNAJC10Q8IXB1 793 aa12.12□□□□□ -0.47
SHROOM3-207ENST00000485780 TEX13AQ9BXU3 409 aaPredicted RBP12.12□□□□□ -0.47
SHROOM3-207ENST00000485780 SALL2Q9Y467 1007 aaPredicted RBP12.12□□□□□ -0.47
SHROOM3-207ENST00000485780 BCORQ6W2J9 1755 aa12.11□□□□□ -0.47
SHROOM3-207ENST00000485780 SCN7AQ01118 1682 aa12.11□□□□□ -0.47
SHROOM3-207ENST00000485780 HNRNPUQ00839 825 aaKnown RBP eCLIP12.11□□□□□ -0.47
SHROOM3-207ENST00000485780 GOLGA2Q08379 1002 aa12.11□□□□□ -0.47
SHROOM3-207ENST00000485780 TRMT2AQ8IZ69 625 aaKnown RBP12.11□□□□□ -0.47
SHROOM3-207ENST00000485780 PRAMEF22A3QJZ6 481 aa12.1□□□□□ -0.47
SHROOM3-207ENST00000485780 E9PSI1 815 aa12.1□□□□□ -0.47
SHROOM3-207ENST00000485780 CRKLP46109 303 aaKnown RBP12.1□□□□□ -0.47
SHROOM3-207ENST00000485780 SLFN5Q08AF3 891 aa12.1□□□□□ -0.47
SHROOM3-207ENST00000485780 TRAPPC3LQ5T215 181 aa12.1□□□□□ -0.47
SHROOM3-207ENST00000485780 TSR2Q969E8 191 aaKnown RBP12.1□□□□□ -0.47
SHROOM3-207ENST00000485780 MYH16Q9H6N6 1097 aa12.1□□□□□ -0.47
SHROOM3-207ENST00000485780 LAS1LQ9Y4W2 734 aaKnown RBP12.1□□□□□ -0.47
SHROOM3-207ENST00000485780 UTRNP46939 3433 aa12.1□□□□□ -0.47
SHROOM3-207ENST00000485780 ERBB4Q15303 1308 aa12.1□□□□□ -0.47
SHROOM3-207ENST00000485780 STARD3NLO95772 234 aa12.09□□□□□ -0.47
SHROOM3-207ENST00000485780 RFC4P35249 363 aa12.09□□□□□ -0.47
SHROOM3-207ENST00000485780 KRT24Q2M2I5 525 aa12.09□□□□□ -0.47
SHROOM3-207ENST00000485780 INTS5Q6P9B9 1019 aaKnown RBP12.09□□□□□ -0.47
SHROOM3-207ENST00000485780 NLGN2Q8NFZ4 835 aa12.09□□□□□ -0.47
SHROOM3-207ENST00000485780 USP16Q9Y5T5 823 aa12.09□□□□□ -0.47
SHROOM3-207ENST00000485780 GOLGB1Q14789 3259 aaKnown RBP12.09□□□□□ -0.47
SHROOM3-207ENST00000485780 RPS6KA4O75676 772 aa12.08□□□□□ -0.48
SHROOM3-207ENST00000485780 CCDC87Q9NVE4 849 aa12.08□□□□□ -0.48
SHROOM3-207ENST00000485780 CD2APQ9Y5K6 639 aa12.08□□□□□ -0.48
SHROOM3-207ENST00000485780 DUSP27Q5VZP5 1158 aa12.07□□□□□ -0.48
SHROOM3-207ENST00000485780 C8orf58Q8NAV2 365 aa12.07□□□□□ -0.48
SHROOM3-207ENST00000485780 ARHGEF1Q92888 912 aaKnown RBP12.07□□□□□ -0.48
SHROOM3-207ENST00000485780 CDCA7LQ96GN5 454 aa12.07□□□□□ -0.48
SHROOM3-207ENST00000485780 ZBTB1Q9Y2K1 713 aa12.07□□□□□ -0.48
SHROOM3-207ENST00000485780 NBPF26B4DH59 902 aa12.06□□□□□ -0.48
SHROOM3-207ENST00000485780 NBPF10Q6P3W6 841 aaKnown RBP12.06□□□□□ -0.48
SHROOM3-207ENST00000485780 LRP10Q7Z4F1 713 aa12.06□□□□□ -0.48
SHROOM3-207ENST00000485780 NLGN1Q8N2Q7 840 aa12.06□□□□□ -0.48
SHROOM3-207ENST00000485780 NBPF15Q8N660 670 aa12.06□□□□□ -0.48
SHROOM3-207ENST00000485780 TSPYL6Q8N831 410 aa12.06□□□□□ -0.48
SHROOM3-207ENST00000485780 COL15A1P39059 1388 aa12.05□□□□□ -0.48
SHROOM3-207ENST00000485780 A1BGP04217 495 aa12.05□□□□□ -0.48
SHROOM3-207ENST00000485780 MMP10P09238 476 aa12.05□□□□□ -0.48
SHROOM3-207ENST00000485780 IL6STP40189 918 aaPredicted RBP12.05□□□□□ -0.48
SHROOM3-207ENST00000485780 EIF5P55010 431 aaKnown RBP12.05□□□□□ -0.48
SHROOM3-207ENST00000485780 PDIA6Q15084 440 aa12.05□□□□□ -0.48
SHROOM3-207ENST00000485780 GRIN3BO60391 1043 aa12.04□□□□□ -0.48
SHROOM3-207ENST00000485780 EXOSC9Q06265 439 aaKnown RBP12.04□□□□□ -0.48
SHROOM3-207ENST00000485780 TWISTNBQ3B726 338 aaPredicted RBP12.04□□□□□ -0.48
SHROOM3-207ENST00000485780 CHMP4AQ9BY43 222 aa12.04□□□□□ -0.48
SHROOM3-207ENST00000485780 PARP3Q9Y6F1 533 aa12.04□□□□□ -0.48
SHROOM3-207ENST00000485780 ANKRD36CQ5JPF3 1778 aa12.04□□□□□ -0.48
SHROOM3-207ENST00000485780 NUP98P52948 1817 aa12.04□□□□□ -0.48
SHROOM3-207ENST00000485780 ARFGEF2Q9Y6D5 1785 aa12.03□□□□□ -0.48
SHROOM3-207ENST00000485780 RGL2O15211 777 aa12.03□□□□□ -0.48
SHROOM3-207ENST00000485780 VAMP4O75379 141 aa12.03□□□□□ -0.48
SHROOM3-207ENST00000485780 CT47B1P0C2W7 299 aaPredicted RBP12.03□□□□□ -0.48
SHROOM3-207ENST00000485780 GYS1P13807 737 aa12.03□□□□□ -0.48
SHROOM3-207ENST00000485780 HDGFL1Q5TGJ6 251 aa12.03□□□□□ -0.48
SHROOM3-207ENST00000485780 ZPR1O75312 459 aa12.02□□□□□ -0.49
SHROOM3-207ENST00000485780 PROSER3Q2NL68 480 aa12.02□□□□□ -0.49
SHROOM3-207ENST00000485780 ZNF428Q96B54 188 aa12.02□□□□□ -0.49
SHROOM3-207ENST00000485780 DDX21Q9NR30 783 aaKnown RBP eCLIP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms