RNA–Protein interactions for RNA: ENST00000483546.1

RPP40-206, Transcript of ribonuclease P/MRP subunit p40, humanhuman

TSL 3

Gene RPP40, Length 654 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPP40-206ENST00000483546 C4AP0C0L4 1744 aa20.4■□□□□ 0.86
RPP40-206ENST00000483546 INTS5Q6P9B9 1019 aaKnown RBP20.4■□□□□ 0.86
RPP40-206ENST00000483546 FAM9BQ8IZU0 186 aa20.4■□□□□ 0.86
RPP40-206ENST00000483546 CHL1O00533 1208 aa20.39■□□□□ 0.85
RPP40-206ENST00000483546 MSH5O43196 834 aa20.39■□□□□ 0.85
RPP40-206ENST00000483546 PHF14O94880 888 aa20.39■□□□□ 0.85
RPP40-206ENST00000483546 EIF4A1P60842 406 aaKnown RBP20.39■□□□□ 0.85
RPP40-206ENST00000483546 MIS18AQ9NYP9 233 aa20.39■□□□□ 0.85
RPP40-206ENST00000483546 AMIGO3Q86WK7 504 aa20.38■□□□□ 0.85
RPP40-206ENST00000483546 CFAP44Q96MT7 982 aa20.38■□□□□ 0.85
RPP40-206ENST00000483546 SOS1Q07889 1333 aaPredicted RBP20.37■□□□□ 0.85
RPP40-206ENST00000483546 GIGYF1O75420 1035 aaPredicted RBP20.36■□□□□ 0.85
RPP40-206ENST00000483546 POLD1P28340 1107 aa20.36■□□□□ 0.85
RPP40-206ENST00000483546 RFC4P35249 363 aa20.36■□□□□ 0.85
RPP40-206ENST00000483546 GNAI1P63096 354 aa20.36■□□□□ 0.85
RPP40-206ENST00000483546 IFT57Q9NWB7 429 aa20.36■□□□□ 0.85
RPP40-206ENST00000483546 ATF5Q9Y2D1 282 aaPredicted RBP20.36■□□□□ 0.85
RPP40-206ENST00000483546 ZBTB1Q9Y2K1 713 aa20.36■□□□□ 0.85
RPP40-206ENST00000483546 IL6STP40189 918 aaPredicted RBP20.35■□□□□ 0.85
RPP40-206ENST00000483546 PTGER2P43116 358 aa20.35■□□□□ 0.85
RPP40-206ENST00000483546 ARHGEF1Q92888 912 aaKnown RBP20.35■□□□□ 0.85
RPP40-206ENST00000483546 SGIP1Q9BQI5 828 aa20.35■□□□□ 0.85
RPP40-206ENST00000483546 COL15A1P39059 1388 aa20.34■□□□□ 0.85
RPP40-206ENST00000483546 A0A087WZG4 1122 aa20.34■□□□□ 0.85
RPP40-206ENST00000483546 ZNF853P0CG23 659 aa20.34■□□□□ 0.85
RPP40-206ENST00000483546 WWC1Q8IX03 1113 aa20.34■□□□□ 0.85
RPP40-206ENST00000483546 USP16Q9Y5T5 823 aa20.34■□□□□ 0.85
RPP40-206ENST00000483546 IL16Q14005 1332 aa20.33■□□□□ 0.85
RPP40-206ENST00000483546 EIF5P55010 431 aaKnown RBP20.33■□□□□ 0.85
RPP40-206ENST00000483546 NPM2Q86SE8 214 aaKnown RBP20.33■□□□□ 0.85
RPP40-206ENST00000483546 PPP1R1BQ9UD71 204 aaPredicted RBP20.33■□□□□ 0.85
RPP40-206ENST00000483546 CANXP27824 592 aaKnown RBP20.32■□□□□ 0.84
RPP40-206ENST00000483546 NLGN1Q8N2Q7 840 aa20.32■□□□□ 0.84
RPP40-206ENST00000483546 LAS1LQ9Y4W2 734 aaKnown RBP20.32■□□□□ 0.84
RPP40-206ENST00000483546 ERBB4Q15303 1308 aa20.31■□□□□ 0.84
RPP40-206ENST00000483546 USP42Q9H9J4 1324 aaKnown RBP20.31■□□□□ 0.84
RPP40-206ENST00000483546 HOXB7P09629 217 aa20.31■□□□□ 0.84
RPP40-206ENST00000483546 PRAMEF22A3QJZ6 481 aa20.3■□□□□ 0.84
RPP40-206ENST00000483546 ZPR1O75312 459 aa20.3■□□□□ 0.84
RPP40-206ENST00000483546 SMIM5Q71RC9 77 aa20.3■□□□□ 0.84
RPP40-206ENST00000483546 WDR63Q8IWG1 891 aa20.3■□□□□ 0.84
RPP40-206ENST00000483546 MIER1Q8N108 512 aa20.3■□□□□ 0.84
RPP40-206ENST00000483546 NARFQ9UHQ1 456 aa20.3■□□□□ 0.84
RPP40-206ENST00000483546 A1BGP04217 495 aa20.29■□□□□ 0.84
RPP40-206ENST00000483546 ARXQ96QS3 562 aa20.29■□□□□ 0.84
RPP40-206ENST00000483546 MBIPQ9NS73 344 aa20.29■□□□□ 0.84
RPP40-206ENST00000483546 SCN7AQ01118 1682 aa20.29■□□□□ 0.84
RPP40-206ENST00000483546 GYS1P13807 737 aa20.28■□□□□ 0.84
RPP40-206ENST00000483546 SRCAPQ6ZRS2 3230 aa20.27■□□□□ 0.84
RPP40-206ENST00000483546 BCORQ6W2J9 1755 aa20.27■□□□□ 0.84
RPP40-206ENST00000483546 RGL2O15211 777 aa20.27■□□□□ 0.84
RPP40-206ENST00000483546 MSL1Q68DK7 614 aa20.27■□□□□ 0.84
RPP40-206ENST00000483546 CHMP4AQ9BY43 222 aa20.27■□□□□ 0.84
RPP40-206ENST00000483546 NBPF26B4DH59 902 aa20.25■□□□□ 0.83
RPP40-206ENST00000483546 NBPF10Q6P3W6 841 aaKnown RBP20.25■□□□□ 0.83
RPP40-206ENST00000483546 NBPF15Q8N660 670 aa20.25■□□□□ 0.83
RPP40-206ENST00000483546 USPL1Q5W0Q7 1092 aa20.24■□□□□ 0.83
RPP40-206ENST00000483546 SRP68Q9UHB9 627 aaKnown RBP20.24■□□□□ 0.83
RPP40-206ENST00000483546 ZNF330Q9Y3S2 320 aaPredicted RBP20.24■□□□□ 0.83
RPP40-206ENST00000483546 MMP10P09238 476 aa20.22■□□□□ 0.83
RPP40-206ENST00000483546 DUSP27Q5VZP5 1158 aa20.22■□□□□ 0.83
RPP40-206ENST00000483546 DZIP3Q86Y13 1208 aaKnown RBP20.22■□□□□ 0.83
RPP40-206ENST00000483546 SALL2Q9Y467 1007 aaPredicted RBP20.22■□□□□ 0.83
RPP40-206ENST00000483546 EIF2S2P20042 333 aaKnown RBP20.21■□□□□ 0.83
RPP40-206ENST00000483546 FKBP8Q14318 412 aa20.21■□□□□ 0.83
RPP40-206ENST00000483546 CLEC4GQ6UXB4 293 aa20.21■□□□□ 0.83
RPP40-206ENST00000483546 TBC1D2BQ9UPU7 963 aa20.21■□□□□ 0.83
RPP40-206ENST00000483546 ZNF521Q96K83 1311 aa20.21■□□□□ 0.83
RPP40-206ENST00000483546 SENP3-EIF4A1A0A087X0R7 540 aa20.2■□□□□ 0.82
RPP40-206ENST00000483546 PIP4K2AP48426 406 aaPredicted RBP20.2■□□□□ 0.82
RPP40-206ENST00000483546 KRT24Q2M2I5 525 aa20.2■□□□□ 0.82
RPP40-206ENST00000483546 HDGFL1Q5TGJ6 251 aa20.2■□□□□ 0.82
RPP40-206ENST00000483546 FHDC1Q9C0D6 1143 aaPredicted RBP20.2■□□□□ 0.82
RPP40-206ENST00000483546 MYH16Q9H6N6 1097 aa20.2■□□□□ 0.82
RPP40-206ENST00000483546 ZNF652Q9Y2D9 606 aa20.2■□□□□ 0.82
RPP40-206ENST00000483546 CD2APQ9Y5K6 639 aa20.2■□□□□ 0.82
RPP40-206ENST00000483546 PARP3Q9Y6F1 533 aa20.2■□□□□ 0.82
RPP40-206ENST00000483546 KIF13BQ9NQT8 1826 aa20.2■□□□□ 0.82
RPP40-206ENST00000483546 CAMTA2O94983 1202 aa20.19■□□□□ 0.82
RPP40-206ENST00000483546 TM4SF1P30408 202 aa20.19■□□□□ 0.82
RPP40-206ENST00000483546 BCL2L12Q9HB09 334 aa20.19■□□□□ 0.82
RPP40-206ENST00000483546 DDX21Q9NR30 783 aaKnown RBP eCLIP20.19■□□□□ 0.82
RPP40-206ENST00000483546 ERVV-1B6SEH8 477 aa20.18■□□□□ 0.82
RPP40-206ENST00000483546 GOLGA2Q08379 1002 aa20.18■□□□□ 0.82
RPP40-206ENST00000483546 PDIA6Q15084 440 aa20.18■□□□□ 0.82
RPP40-206ENST00000483546 KIF6Q6ZMV9 814 aa20.18■□□□□ 0.82
RPP40-206ENST00000483546 SYT17Q9BSW7 474 aa20.18■□□□□ 0.82
RPP40-206ENST00000483546 DBF4Q9UBU7 674 aaPredicted RBP20.18■□□□□ 0.82
RPP40-206ENST00000483546 FANCIQ9NVI1 1328 aa20.18■□□□□ 0.82
RPP40-206ENST00000483546 NRXN2Q9P2S2 1712 aa20.18■□□□□ 0.82
RPP40-206ENST00000483546 CACNA1FO60840 1977 aa20.17■□□□□ 0.82
RPP40-206ENST00000483546 MYL6BP14649 208 aa20.17■□□□□ 0.82
RPP40-206ENST00000483546 TSR2Q969E8 191 aaKnown RBP20.17■□□□□ 0.82
RPP40-206ENST00000483546 NUP98P52948 1817 aa20.17■□□□□ 0.82
RPP40-206ENST00000483546 AFDNP55196 1824 aaKnown RBP20.16■□□□□ 0.82
RPP40-206ENST00000483546 NFIXQ14938 502 aa20.16■□□□□ 0.82
RPP40-206ENST00000483546 LRP10Q7Z4F1 713 aa20.16■□□□□ 0.82
RPP40-206ENST00000483546 C8orf58Q8NAV2 365 aa20.16■□□□□ 0.82
RPP40-206ENST00000483546 POLRMTO00411 1230 aaKnown RBP20.15■□□□□ 0.82
RPP40-206ENST00000483546 HYPKQ9NX55 129 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms