RNA–Protein interactions for RNA: ENST00000460573.5

C9orf3-209, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-209ENST00000460573 IL16Q14005 1332 aa29.27■■■□□ 2.28
C9orf3-209ENST00000460573 SENP3-EIF4A1A0A087X0R7 540 aa29.27■■■□□ 2.28
C9orf3-209ENST00000460573 PHF14O94880 888 aa29.27■■■□□ 2.28
C9orf3-209ENST00000460573 MSL1Q68DK7 614 aa29.27■■■□□ 2.28
C9orf3-209ENST00000460573 SALL2Q9Y467 1007 aaPredicted RBP29.27■■■□□ 2.28
C9orf3-209ENST00000460573 LAS1LQ9Y4W2 734 aaKnown RBP29.27■■■□□ 2.28
C9orf3-209ENST00000460573 ZNF853P0CG23 659 aa29.26■■■□□ 2.27
C9orf3-209ENST00000460573 LINC00116Q8NCU8 138 aa29.26■■■□□ 2.27
C9orf3-209ENST00000460573 EIF4A1P60842 406 aaKnown RBP29.25■■■□□ 2.27
C9orf3-209ENST00000460573 PELP1Q8IZL8 1130 aaKnown RBP29.25■■■□□ 2.27
C9orf3-209ENST00000460573 SNRPA1P09661 255 aaKnown RBP29.24■■■□□ 2.27
C9orf3-209ENST00000460573 RC3H1Q5TC82 1133 aaKnown RBP29.24■■■□□ 2.27
C9orf3-209ENST00000460573 GPR162Q16538 588 aa29.23■■■□□ 2.27
C9orf3-209ENST00000460573 DNAJC10Q8IXB1 793 aa29.23■■■□□ 2.27
C9orf3-209ENST00000460573 TJP1Q07157 1748 aa29.23■■■□□ 2.27
C9orf3-209ENST00000460573 CNTNAP4Q9C0A0 1308 aa29.22■■■□□ 2.27
C9orf3-209ENST00000460573 COL24A1Q17RW2 1714 aa29.22■■■□□ 2.27
C9orf3-209ENST00000460573 COL5A3P25940 1745 aaPredicted RBP29.21■■■□□ 2.27
C9orf3-209ENST00000460573 STARD3NLO95772 234 aa29.21■■■□□ 2.27
C9orf3-209ENST00000460573 MBIPQ9NS73 344 aa29.2■■■□□ 2.26
C9orf3-209ENST00000460573 UBR3Q6ZT12 1888 aa29.19■■■□□ 2.26
C9orf3-209ENST00000460573 GNPATO15228 680 aa29.19■■■□□ 2.26
C9orf3-209ENST00000460573 CYP19A1P11511 503 aaPredicted RBP29.19■■■□□ 2.26
C9orf3-209ENST00000460573 ZNF521Q96K83 1311 aa29.19■■■□□ 2.26
C9orf3-209ENST00000460573 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.18■■■□□ 2.26
C9orf3-209ENST00000460573 GIGYF1O75420 1035 aaPredicted RBP29.18■■■□□ 2.26
C9orf3-209ENST00000460573 CRKLP46109 303 aaKnown RBP29.18■■■□□ 2.26
C9orf3-209ENST00000460573 SSFA2P28290 1259 aa29.17■■■□□ 2.26
C9orf3-209ENST00000460573 CCDC87Q9NVE4 849 aa29.16■■■□□ 2.26
C9orf3-209ENST00000460573 USP16Q9Y5T5 823 aa29.15■■■□□ 2.26
C9orf3-209ENST00000460573 CHD4Q14839 1912 aa29.15■■■□□ 2.26
C9orf3-209ENST00000460573 RPS6KA4O75676 772 aa29.14■■■□□ 2.26
C9orf3-209ENST00000460573 RTCBQ9Y3I0 505 aaKnown RBP29.14■■■□□ 2.26
C9orf3-209ENST00000460573 HOXB7P09629 217 aa29.13■■■□□ 2.25
C9orf3-209ENST00000460573 INTS5Q6P9B9 1019 aaKnown RBP29.13■■■□□ 2.25
C9orf3-209ENST00000460573 GOLGA2Q08379 1002 aa29.12■■■□□ 2.25
C9orf3-209ENST00000460573 MYH16Q9H6N6 1097 aa29.12■■■□□ 2.25
C9orf3-209ENST00000460573 PRAMEF22A3QJZ6 481 aa29.11■■■□□ 2.25
C9orf3-209ENST00000460573 ADRA2BP18089 450 aa29.11■■■□□ 2.25
C9orf3-209ENST00000460573 SMIM5Q71RC9 77 aa29.11■■■□□ 2.25
C9orf3-209ENST00000460573 NLGN2Q8NFZ4 835 aa29.11■■■□□ 2.25
C9orf3-209ENST00000460573 HNRNPUQ00839 825 aaKnown RBP eCLIP29.1■■■□□ 2.25
C9orf3-209ENST00000460573 TRAPPC3LQ5T215 181 aa29.09■■■□□ 2.25
C9orf3-209ENST00000460573 TSR2Q969E8 191 aaKnown RBP29.09■■■□□ 2.25
C9orf3-209ENST00000460573 MYH14Q7Z406 1995 aaKnown RBP29.09■■■□□ 2.25
C9orf3-209ENST00000460573 SOS1Q07889 1333 aaPredicted RBP29.09■■■□□ 2.25
C9orf3-209ENST00000460573 LAMB4A4D0S4 1761 aa29.08■■■□□ 2.25
C9orf3-209ENST00000460573 CHMP4AQ9BY43 222 aa29.08■■■□□ 2.25
C9orf3-209ENST00000460573 ZBTB1Q9Y2K1 713 aa29.08■■■□□ 2.25
C9orf3-209ENST00000460573 E9PSI1 815 aa29.07■■■□□ 2.24
C9orf3-209ENST00000460573 AMIGO3Q86WK7 504 aa29.07■■■□□ 2.24
C9orf3-209ENST00000460573 FANCIQ9NVI1 1328 aa29.07■■■□□ 2.24
C9orf3-209ENST00000460573 ERBB4Q15303 1308 aa29.06■■■□□ 2.24
C9orf3-209ENST00000460573 A1BGP04217 495 aa29.06■■■□□ 2.24
C9orf3-209ENST00000460573 CANXP27824 592 aaKnown RBP29.06■■■□□ 2.24
C9orf3-209ENST00000460573 IL6STP40189 918 aaPredicted RBP29.06■■■□□ 2.24
C9orf3-209ENST00000460573 DUSP27Q5VZP5 1158 aa29.06■■■□□ 2.24
C9orf3-209ENST00000460573 SPINK5Q9NQ38 1064 aaPredicted RBP29.06■■■□□ 2.24
C9orf3-209ENST00000460573 KRT24Q2M2I5 525 aa29.05■■■□□ 2.24
C9orf3-209ENST00000460573 NPM2Q86SE8 214 aaKnown RBP29.04■■■□□ 2.24
C9orf3-209ENST00000460573 CD2APQ9Y5K6 639 aa29.04■■■□□ 2.24
C9orf3-209ENST00000460573 EIF5P55010 431 aaKnown RBP29.03■■■□□ 2.24
C9orf3-209ENST00000460573 A0A087WZG4 1122 aa29.02■■■□□ 2.24
C9orf3-209ENST00000460573 EIF2S2P20042 333 aaKnown RBP29.02■■■□□ 2.24
C9orf3-209ENST00000460573 RFC4P35249 363 aa29.02■■■□□ 2.24
C9orf3-209ENST00000460573 SLFN5Q08AF3 891 aa29.02■■■□□ 2.24
C9orf3-209ENST00000460573 C8orf58Q8NAV2 365 aa29.02■■■□□ 2.24
C9orf3-209ENST00000460573 ARHGEF1Q92888 912 aaKnown RBP29.02■■■□□ 2.24
C9orf3-209ENST00000460573 GRIN3BO60391 1043 aa29.01■■■□□ 2.23
C9orf3-209ENST00000460573 COL15A1P39059 1388 aa29.01■■■□□ 2.23
C9orf3-209ENST00000460573 HDGFL1Q5TGJ6 251 aa29■■■□□ 2.23
C9orf3-209ENST00000460573 ZBED9Q6R2W3 1325 aa28.99■■■□□ 2.23
C9orf3-209ENST00000460573 ELL2O00472 640 aaPredicted RBP28.99■■■□□ 2.23
C9orf3-209ENST00000460573 NBPF26B4DH59 902 aa28.98■■■□□ 2.23
C9orf3-209ENST00000460573 TWISTNBQ3B726 338 aaPredicted RBP28.98■■■□□ 2.23
C9orf3-209ENST00000460573 NBPF10Q6P3W6 841 aaKnown RBP28.98■■■□□ 2.23
C9orf3-209ENST00000460573 NBPF15Q8N660 670 aa28.98■■■□□ 2.23
C9orf3-209ENST00000460573 EXOSC9Q06265 439 aaKnown RBP28.97■■■□□ 2.23
C9orf3-209ENST00000460573 TSPYL6Q8N831 410 aa28.97■■■□□ 2.23
C9orf3-209ENST00000460573 MMP10P09238 476 aa28.96■■■□□ 2.23
C9orf3-209ENST00000460573 TRMT2AQ8IZ69 625 aaKnown RBP28.96■■■□□ 2.23
C9orf3-209ENST00000460573 NLGN1Q8N2Q7 840 aa28.96■■■□□ 2.23
C9orf3-209ENST00000460573 CDCA7LQ96GN5 454 aa28.96■■■□□ 2.23
C9orf3-209ENST00000460573 ZNF330Q9Y3S2 320 aaPredicted RBP28.96■■■□□ 2.23
C9orf3-209ENST00000460573 ZPR1O75312 459 aa28.95■■■□□ 2.22
C9orf3-209ENST00000460573 PIP4K2AP48426 406 aaPredicted RBP28.95■■■□□ 2.22
C9orf3-209ENST00000460573 CCDC30Q5VVM6 783 aa28.95■■■□□ 2.22
C9orf3-209ENST00000460573 ZNF784Q8NCA9 323 aaPredicted RBP28.95■■■□□ 2.22
C9orf3-209ENST00000460573 DDX21Q9NR30 783 aaKnown RBP eCLIP28.95■■■□□ 2.22
C9orf3-209ENST00000460573 DBF4Q9UBU7 674 aaPredicted RBP28.95■■■□□ 2.22
C9orf3-209ENST00000460573 NARFQ9UHQ1 456 aa28.95■■■□□ 2.22
C9orf3-209ENST00000460573 PDIA6Q15084 440 aa28.94■■■□□ 2.22
C9orf3-209ENST00000460573 NECTIN2Q92692 538 aa28.94■■■□□ 2.22
C9orf3-209ENST00000460573 USP42Q9H9J4 1324 aaKnown RBP28.94■■■□□ 2.22
C9orf3-209ENST00000460573 C4AP0C0L4 1744 aa28.92■■■□□ 2.22
C9orf3-209ENST00000460573 VAMP4O75379 141 aa28.92■■■□□ 2.22
C9orf3-209ENST00000460573 MYL6BP14649 208 aa28.92■■■□□ 2.22
C9orf3-209ENST00000460573 YBX3P16989 372 aaKnown RBP eCLIP28.92■■■□□ 2.22
C9orf3-209ENST00000460573 WWC3Q9ULE0 1092 aa28.92■■■□□ 2.22
C9orf3-209ENST00000460573 DZIP3Q86Y13 1208 aaKnown RBP28.91■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms