RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 PTGER2P43116 358 aa18.82■□□□□ 0.6
COL3A1-203ENST00000450867 EIF4A1P60842 406 aaKnown RBP18.82■□□□□ 0.6
COL3A1-203ENST00000450867 MIS18AQ9NYP9 233 aa18.82■□□□□ 0.6
COL3A1-203ENST00000450867 SOS1Q07889 1333 aaPredicted RBP18.81■□□□□ 0.6
COL3A1-203ENST00000450867 ZBTB7AO95365 584 aa18.81■□□□□ 0.6
COL3A1-203ENST00000450867 SNRPA1P09661 255 aaKnown RBP18.81■□□□□ 0.6
COL3A1-203ENST00000450867 ZNF853P0CG23 659 aa18.8■□□□□ 0.6
COL3A1-203ENST00000450867 CALD1Q05682 793 aaKnown RBP18.8■□□□□ 0.6
COL3A1-203ENST00000450867 NGEFQ8N5V2 710 aa18.8■□□□□ 0.6
COL3A1-203ENST00000450867 CFAP44Q96MT7 982 aa18.8■□□□□ 0.6
COL3A1-203ENST00000450867 SCN7AQ01118 1682 aa18.79■□□□□ 0.6
COL3A1-203ENST00000450867 BCORQ6W2J9 1755 aa18.79■□□□□ 0.6
COL3A1-203ENST00000450867 FAM9BQ8IZU0 186 aa18.79■□□□□ 0.6
COL3A1-203ENST00000450867 TSPYL4Q9UJ04 414 aa18.79■□□□□ 0.6
COL3A1-203ENST00000450867 ZBTB1Q9Y2K1 713 aa18.79■□□□□ 0.6
COL3A1-203ENST00000450867 GIGYF1O75420 1035 aaPredicted RBP18.78■□□□□ 0.6
COL3A1-203ENST00000450867 PHF14O94880 888 aa18.78■□□□□ 0.6
COL3A1-203ENST00000450867 TRAPPC3LQ5T215 181 aa18.78■□□□□ 0.6
COL3A1-203ENST00000450867 ARHGEF1Q92888 912 aaKnown RBP18.78■□□□□ 0.6
COL3A1-203ENST00000450867 IFT57Q9NWB7 429 aa18.78■□□□□ 0.6
COL3A1-203ENST00000450867 USP16Q9Y5T5 823 aa18.78■□□□□ 0.6
COL3A1-203ENST00000450867 COL15A1P39059 1388 aa18.78■□□□□ 0.6
COL3A1-203ENST00000450867 EIF5P55010 431 aaKnown RBP18.77■□□□□ 0.6
COL3A1-203ENST00000450867 SMIM5Q71RC9 77 aa18.77■□□□□ 0.6
COL3A1-203ENST00000450867 WWC1Q8IX03 1113 aa18.77■□□□□ 0.6
COL3A1-203ENST00000450867 PRAMEF22A3QJZ6 481 aa18.76■□□□□ 0.59
COL3A1-203ENST00000450867 IL6STP40189 918 aaPredicted RBP18.76■□□□□ 0.59
COL3A1-203ENST00000450867 ATF5Q9Y2D1 282 aaPredicted RBP18.76■□□□□ 0.59
COL3A1-203ENST00000450867 IL16Q14005 1332 aa18.75■□□□□ 0.59
COL3A1-203ENST00000450867 USP42Q9H9J4 1324 aaKnown RBP18.75■□□□□ 0.59
COL3A1-203ENST00000450867 GNAI1P63096 354 aa18.75■□□□□ 0.59
COL3A1-203ENST00000450867 MSH5O43196 834 aa18.74■□□□□ 0.59
COL3A1-203ENST00000450867 MIER1Q8N108 512 aa18.74■□□□□ 0.59
COL3A1-203ENST00000450867 KIF13BQ9NQT8 1826 aa18.74■□□□□ 0.59
COL3A1-203ENST00000450867 ERBB4Q15303 1308 aa18.74■□□□□ 0.59
COL3A1-203ENST00000450867 A1BGP04217 495 aa18.73■□□□□ 0.59
COL3A1-203ENST00000450867 GYS1P13807 737 aa18.73■□□□□ 0.59
COL3A1-203ENST00000450867 RFC4P35249 363 aa18.73■□□□□ 0.59
COL3A1-203ENST00000450867 MBIPQ9NS73 344 aa18.73■□□□□ 0.59
COL3A1-203ENST00000450867 NBPF26B4DH59 902 aa18.72■□□□□ 0.59
COL3A1-203ENST00000450867 HOXB7P09629 217 aa18.72■□□□□ 0.59
COL3A1-203ENST00000450867 NBPF10Q6P3W6 841 aaKnown RBP18.72■□□□□ 0.59
COL3A1-203ENST00000450867 WDR63Q8IWG1 891 aa18.72■□□□□ 0.59
COL3A1-203ENST00000450867 NBPF15Q8N660 670 aa18.72■□□□□ 0.59
COL3A1-203ENST00000450867 NARFQ9UHQ1 456 aa18.72■□□□□ 0.59
COL3A1-203ENST00000450867 A0A087WZG4 1122 aa18.71■□□□□ 0.59
COL3A1-203ENST00000450867 CANXP27824 592 aaKnown RBP18.71■□□□□ 0.59
COL3A1-203ENST00000450867 POLD1P28340 1107 aa18.71■□□□□ 0.59
COL3A1-203ENST00000450867 NLGN1Q8N2Q7 840 aa18.71■□□□□ 0.59
COL3A1-203ENST00000450867 NRXN2Q9P2S2 1712 aa18.71■□□□□ 0.59
COL3A1-203ENST00000450867 ZNF521Q96K83 1311 aa18.71■□□□□ 0.59
COL3A1-203ENST00000450867 AFDNP55196 1824 aaKnown RBP18.7■□□□□ 0.58
COL3A1-203ENST00000450867 ARXQ96QS3 562 aa18.7■□□□□ 0.58
COL3A1-203ENST00000450867 LAS1LQ9Y4W2 734 aaKnown RBP18.7■□□□□ 0.58
COL3A1-203ENST00000450867 CACNA1FO60840 1977 aa18.7■□□□□ 0.58
COL3A1-203ENST00000450867 NUP98P52948 1817 aa18.7■□□□□ 0.58
COL3A1-203ENST00000450867 RGL2O15211 777 aa18.69■□□□□ 0.58
COL3A1-203ENST00000450867 MSL1Q68DK7 614 aa18.69■□□□□ 0.58
COL3A1-203ENST00000450867 SRP68Q9UHB9 627 aaKnown RBP18.69■□□□□ 0.58
COL3A1-203ENST00000450867 BCL2L12Q9HB09 334 aa18.68■□□□□ 0.58
COL3A1-203ENST00000450867 ZPR1O75312 459 aa18.67■□□□□ 0.58
COL3A1-203ENST00000450867 KRT24Q2M2I5 525 aa18.67■□□□□ 0.58
COL3A1-203ENST00000450867 PPP1R1BQ9UD71 204 aaPredicted RBP18.67■□□□□ 0.58
COL3A1-203ENST00000450867 KIAA1551Q9HCM1 1747 aa18.66■□□□□ 0.58
COL3A1-203ENST00000450867 FKBP8Q14318 412 aa18.66■□□□□ 0.58
COL3A1-203ENST00000450867 PDIA6Q15084 440 aa18.66■□□□□ 0.58
COL3A1-203ENST00000450867 USPL1Q5W0Q7 1092 aa18.66■□□□□ 0.58
COL3A1-203ENST00000450867 LRP10Q7Z4F1 713 aa18.66■□□□□ 0.58
COL3A1-203ENST00000450867 SENP3-EIF4A1A0A087X0R7 540 aa18.65■□□□□ 0.58
COL3A1-203ENST00000450867 CAMTA2O94983 1202 aa18.65■□□□□ 0.58
COL3A1-203ENST00000450867 TM4SF1P30408 202 aa18.65■□□□□ 0.58
COL3A1-203ENST00000450867 PIP4K2AP48426 406 aaPredicted RBP18.65■□□□□ 0.58
COL3A1-203ENST00000450867 ANKRD36CQ5JPF3 1778 aa18.64■□□□□ 0.57
COL3A1-203ENST00000450867 MMP10P09238 476 aa18.64■□□□□ 0.57
COL3A1-203ENST00000450867 DUSP27Q5VZP5 1158 aa18.64■□□□□ 0.57
COL3A1-203ENST00000450867 DZIP3Q86Y13 1208 aaKnown RBP18.64■□□□□ 0.57
COL3A1-203ENST00000450867 CLEC4GQ6UXB4 293 aa18.63■□□□□ 0.57
COL3A1-203ENST00000450867 NPM2Q86SE8 214 aaKnown RBP18.63■□□□□ 0.57
COL3A1-203ENST00000450867 FHDC1Q9C0D6 1143 aaPredicted RBP18.63■□□□□ 0.57
COL3A1-203ENST00000450867 TBC1D2BQ9UPU7 963 aa18.63■□□□□ 0.57
COL3A1-203ENST00000450867 C10orf71Q711Q0 1435 aa18.63■□□□□ 0.57
COL3A1-203ENST00000450867 C8orf58Q8NAV2 365 aa18.62■□□□□ 0.57
COL3A1-203ENST00000450867 TSR2Q969E8 191 aaKnown RBP18.62■□□□□ 0.57
COL3A1-203ENST00000450867 DDX21Q9NR30 783 aaKnown RBP eCLIP18.62■□□□□ 0.57
COL3A1-203ENST00000450867 SALL2Q9Y467 1007 aaPredicted RBP18.62■□□□□ 0.57
COL3A1-203ENST00000450867 FANCIQ9NVI1 1328 aa18.62■□□□□ 0.57
COL3A1-203ENST00000450867 BRCA1P38398 1863 aaKnown RBP18.61■□□□□ 0.57
COL3A1-203ENST00000450867 EIF2S2P20042 333 aaKnown RBP18.61■□□□□ 0.57
COL3A1-203ENST00000450867 DDR1Q08345 913 aa18.61■□□□□ 0.57
COL3A1-203ENST00000450867 HDGFL1Q5TGJ6 251 aa18.61■□□□□ 0.57
COL3A1-203ENST00000450867 SYT17Q9BSW7 474 aa18.61■□□□□ 0.57
COL3A1-203ENST00000450867 SPINK5Q9NQ38 1064 aaPredicted RBP18.61■□□□□ 0.57
COL3A1-203ENST00000450867 ZNF330Q9Y3S2 320 aaPredicted RBP18.61■□□□□ 0.57
COL3A1-203ENST00000450867 CD2APQ9Y5K6 639 aa18.61■□□□□ 0.57
COL3A1-203ENST00000450867 ERVV-1B6SEH8 477 aa18.6■□□□□ 0.57
COL3A1-203ENST00000450867 POLRMTO00411 1230 aaKnown RBP18.6■□□□□ 0.57
COL3A1-203ENST00000450867 NFIXQ14938 502 aa18.6■□□□□ 0.57
COL3A1-203ENST00000450867 PROSER3Q2NL68 480 aa18.6■□□□□ 0.57
COL3A1-203ENST00000450867 CHMP4AQ9BY43 222 aa18.6■□□□□ 0.57
COL3A1-203ENST00000450867 ANKRD31Q8N7Z5 1873 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms