RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 CITED4Q96RK1 184 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 RNF19AQ9NV58 838 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 PRKAB1Q9Y478 270 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 EMILIN1Q9Y6C2 1016 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 GIGYF1O75420 1035 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 FOXD4L6Q3SYB3 417 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 SWT1Q5T5J6 900 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 RNF20Q5VTR2 975 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 FOXD4L3Q6VB84 417 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 CAPN12Q6ZSI9 719 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 CRELD1Q96HD1 420 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 CDC45O75419 566 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 WDHD1O75717 1129 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 BRD3Q15059 726 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 MCF2L2Q86YR7 1114 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 TSEN2Q8NCE0 465 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 TERF2IPQ9NYB0 399 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 PRR12Q9ULL5 1215 aa3.07□□□□□ -1.92
CCDC88A-208ENST00000444458 CFHP08603 1231 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 PTPREP23469 700 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 CNGA1P29973 690 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 GNA15P30679 374 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 KMT5BQ4FZB7 885 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 AXDND1Q5T1B0 1012 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 ARMC2Q8NEN0 867 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 RPS6KC1Q96S38 1066 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 ARHGAP9Q9BRR9 750 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 ZBTB24O43167 697 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 WDR78Q5VTH9 848 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 LYPD8Q6UX82 237 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 GAS2L2Q8NHY3 880 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 CPLX3Q8WVH0 158 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 TMX4Q9H1E5 349 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 MAP10Q9P2G4 905 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 SPG7Q9UQ90 795 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 TRIM6-TRIM34B2RNG4 842 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 BHMG1C9JSJ3 638 aaPredicted RBP3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 SLC10A3P09131 477 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 EIF4BP23588 611 aaKnown RBP3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 ZFYVE27Q5T4F4 411 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 LDLRAD1Q5T700 205 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 NBPF14Q5TI25 921 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 CARD14Q9BXL6 1004 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 CCDC87Q9NVE4 849 aa3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 DDX41Q9UJV9 622 aaKnown RBP3.06□□□□□ -1.92
CCDC88A-208ENST00000444458 FAM205CA6NFA0 338 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 NUDT7P0C024 238 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 USP4Q13107 963 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 PPP4R3BQ5MIZ7 849 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 GPRASP2Q96D09 838 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 ZBTB7BO15156 539 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 COL9A1P20849 921 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 EIF1AXP47813 144 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 TBX4P57082 545 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 RHBDL3P58872 404 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 PAK2Q13177 524 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 AGERQ15109 404 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 DESI1Q6ICB0 168 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 TSHZ1Q6ZSZ6 1077 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 ADAM32Q8TC27 787 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 SCG3Q8WXD2 468 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 FRMD6Q96NE9 622 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 SETDB2Q96T68 719 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 PCGF6Q9BYE7 350 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 FANCLQ9NW38 375 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 LAS1LQ9Y4W2 734 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 MAGEB6P1A0A0J9YX57 407 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 MYCP01106 439 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 ATF4P18848 351 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 IFRD2Q12894 506 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 TSGA10IPQ3SY00 556 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 LONRF3Q496Y0 759 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 NBPF6Q5VWK0 638 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 C16orf46Q6P387 395 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 PAF1Q8N7H5 531 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 NBPF4Q96M43 638 aa3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 MPHOSPH6Q99547 160 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 NAP1L4Q99733 375 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-208ENST00000444458 PCSK2P16519 638 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 PAX3P23760 479 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 RACK1P63244 317 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 NFX1Q12986 1120 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 ECM1Q16610 540 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 SLC51AQ86UW1 340 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 GPATCH11Q8N954 259 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 APPBP2Q92624 585 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 SGSM3Q96HU1 749 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 TMX1Q9H3N1 280 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 PNMA2Q9UL42 364 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 MRVI1Q9Y6F6 885 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 MAFGO15525 162 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 FGRP09769 529 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 HDAC1Q13547 482 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 TRAF7Q6Q0C0 670 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 FAM9BQ8IZU0 186 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 PHTF2Q8N3S3 785 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 HOMER2Q9NSB8 354 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 SIRPGQ9P1W8 387 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 GPSM3Q9Y4H4 160 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 PCDHB11Q9Y5F2 797 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 150.9 ms