RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 ERBB4Q15303 1308 aa4.34□□□□□ -1.71
VPS13A-208ENST00000423463 ERCC6Q03468 1493 aa4.34□□□□□ -1.71
VPS13A-208ENST00000423463 CDC14CA4D256 554 aa4.34□□□□□ -1.71
VPS13A-208ENST00000423463 SLC35F4A4IF30 521 aa4.34□□□□□ -1.71
VPS13A-208ENST00000423463 CARNS1A5YM72 827 aa4.34□□□□□ -1.71
VPS13A-208ENST00000423463 TERTO14746 1132 aaKnown RBP4.34□□□□□ -1.71
VPS13A-208ENST00000423463 PPFIA3O75145 1194 aa4.34□□□□□ -1.71
VPS13A-208ENST00000423463 SEC13P55735 322 aa4.34□□□□□ -1.71
VPS13A-208ENST00000423463 NFX1Q12986 1120 aaKnown RBP4.34□□□□□ -1.71
VPS13A-208ENST00000423463 RIPOR1Q6ZS17 1223 aa4.34□□□□□ -1.71
VPS13A-208ENST00000423463 PPARGC1BQ86YN6 1023 aaKnown RBP4.34□□□□□ -1.71
VPS13A-208ENST00000423463 SLC9A9Q8IVB4 645 aa4.34□□□□□ -1.71
VPS13A-208ENST00000423463 ZNF295-AS1Q8N0V1 137 aa4.34□□□□□ -1.71
VPS13A-208ENST00000423463 RHBDD1Q8TEB9 315 aa4.34□□□□□ -1.71
VPS13A-208ENST00000423463 PBXIP1Q96AQ6 731 aa4.34□□□□□ -1.71
VPS13A-208ENST00000423463 AIDAQ96BJ3 306 aa4.34□□□□□ -1.71
VPS13A-208ENST00000423463 SLC4A9Q96Q91 983 aa4.34□□□□□ -1.71
VPS13A-208ENST00000423463 HINFPQ9BQA5 517 aa4.34□□□□□ -1.71
VPS13A-208ENST00000423463 RBM19Q9Y4C8 960 aaKnown RBP4.34□□□□□ -1.71
VPS13A-208ENST00000423463 CCDC88BA6NC98 1476 aa4.34□□□□□ -1.71
VPS13A-208ENST00000423463 BACH1O14867 736 aa4.34□□□□□ -1.72
VPS13A-208ENST00000423463 MTFR1Q15390 333 aa4.34□□□□□ -1.72
VPS13A-208ENST00000423463 GNASQ5JWF2 1037 aa4.34□□□□□ -1.72
VPS13A-208ENST00000423463 CHMP7Q8WUX9 453 aaPredicted RBP4.34□□□□□ -1.72
VPS13A-208ENST00000423463 TIMMDC1Q9NPL8 285 aa4.34□□□□□ -1.72
VPS13A-208ENST00000423463 CABP1Q9NZU7 370 aa4.34□□□□□ -1.72
VPS13A-208ENST00000423463 ITGA6P23229 1130 aa4.33□□□□□ -1.72
VPS13A-208ENST00000423463 CFTRP13569 1480 aa4.33□□□□□ -1.72
VPS13A-208ENST00000423463 SPATA31C2B4DYI2 1134 aa4.33□□□□□ -1.72
VPS13A-208ENST00000423463 GTF2E1P29083 439 aaPredicted RBP4.33□□□□□ -1.72
VPS13A-208ENST00000423463 ZDHHC1Q8WTX9 485 aa4.33□□□□□ -1.72
VPS13A-208ENST00000423463 H3BM21 787 aa4.32□□□□□ -1.72
VPS13A-208ENST00000423463 GPR25O00155 361 aa4.32□□□□□ -1.72
VPS13A-208ENST00000423463 C21orf2O43822 256 aa4.32□□□□□ -1.72
VPS13A-208ENST00000423463 TMEM164Q5U3C3 297 aa4.32□□□□□ -1.72
VPS13A-208ENST00000423463 KLRG1Q96E93 195 aa4.32□□□□□ -1.72
VPS13A-208ENST00000423463 NIFKQ9BYG3 293 aaKnown RBP4.32□□□□□ -1.72
VPS13A-208ENST00000423463 RUBCNLQ9H714 662 aa4.32□□□□□ -1.72
VPS13A-208ENST00000423463 ZNF232Q9UNY5 417 aa4.32□□□□□ -1.72
VPS13A-208ENST00000423463 ATP4AP20648 1035 aa4.32□□□□□ -1.72
VPS13A-208ENST00000423463 TXLNAP40222 546 aa4.32□□□□□ -1.72
VPS13A-208ENST00000423463 FOXK2Q01167 660 aa4.32□□□□□ -1.72
VPS13A-208ENST00000423463 FAM200AQ8TCP9 573 aa4.32□□□□□ -1.72
VPS13A-208ENST00000423463 SCG3Q8WXD2 468 aaKnown RBP4.32□□□□□ -1.72
VPS13A-208ENST00000423463 L3MBTL2Q969R5 705 aa4.32□□□□□ -1.72
VPS13A-208ENST00000423463 PRMT3O60678 531 aa4.31□□□□□ -1.72
VPS13A-208ENST00000423463 WFS1O76024 890 aa4.31□□□□□ -1.72
VPS13A-208ENST00000423463 DYRK1BQ9Y463 629 aa4.31□□□□□ -1.72
VPS13A-208ENST00000423463 CDK2AP1O14519 115 aa4.31□□□□□ -1.72
VPS13A-208ENST00000423463 THBS1P07996 1170 aa4.31□□□□□ -1.72
VPS13A-208ENST00000423463 VWA5B2Q8N398 1253 aa4.31□□□□□ -1.72
VPS13A-208ENST00000423463 A0A1B0GTH6 734 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 PPP1R12BO60237 982 aaPredicted RBP4.3□□□□□ -1.72
VPS13A-208ENST00000423463 ATG7O95352 703 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 FAM69CQ0P6D2 419 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 DBN1Q16643 649 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 LCE2AQ5TA79 106 aaPredicted RBP4.3□□□□□ -1.72
VPS13A-208ENST00000423463 ZNF837Q96EG3 531 aaPredicted RBP4.3□□□□□ -1.72
VPS13A-208ENST00000423463 PRIMPOLQ96LW4 560 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 CUX2O14529 1486 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 MSX1P28360 303 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 SCNN1AP37088 669 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 ARSJQ5FYB0 599 aaPredicted RBP4.3□□□□□ -1.72
VPS13A-208ENST00000423463 GPR161Q8N6U8 529 aaKnown RBP4.3□□□□□ -1.72
VPS13A-208ENST00000423463 HCN4Q9Y3Q4 1203 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 FANCD2Q9BXW9 1451 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 EML1O00423 815 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 F11P03951 625 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 NOS2P35228 1153 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 PSMA6P60900 246 aaKnown RBP4.3□□□□□ -1.72
VPS13A-208ENST00000423463 ATAD2Q6PL18 1390 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 SLC16A10Q8TF71 515 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 GTPBP3Q969Y2 492 aaKnown RBP4.3□□□□□ -1.72
VPS13A-208ENST00000423463 NGLY1Q96IV0 654 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 SLAIN2Q9P270 581 aa4.3□□□□□ -1.72
VPS13A-208ENST00000423463 ACIN1Q9UKV3 1341 aaKnown RBP4.29□□□□□ -1.72
VPS13A-208ENST00000423463 SERTM1A2A2V5 107 aa4.29□□□□□ -1.72
VPS13A-208ENST00000423463 M0R2N6 131 aa4.29□□□□□ -1.72
VPS13A-208ENST00000423463 GMPRP36959 345 aa4.29□□□□□ -1.72
VPS13A-208ENST00000423463 NBPF1Q3BBV0 1214 aa4.29□□□□□ -1.72
VPS13A-208ENST00000423463 WDR44Q5JSH3 913 aa4.29□□□□□ -1.72
VPS13A-208ENST00000423463 TREML4Q6UXN2 200 aa4.29□□□□□ -1.72
VPS13A-208ENST00000423463 CAPN12Q6ZSI9 719 aa4.29□□□□□ -1.72
VPS13A-208ENST00000423463 IRF7Q92985 503 aa4.29□□□□□ -1.72
VPS13A-208ENST00000423463 MKNK1Q9BUB5 465 aa4.29□□□□□ -1.72
VPS13A-208ENST00000423463 CEP164Q9UPV0 1460 aa4.29□□□□□ -1.72
VPS13A-208ENST00000423463 RNFT1Q5M7Z0 435 aa4.29□□□□□ -1.72
VPS13A-208ENST00000423463 MRC2Q9UBG0 1479 aa4.28□□□□□ -1.72
VPS13A-208ENST00000423463 FKBP5Q13451 457 aaPredicted RBP4.28□□□□□ -1.72
VPS13A-208ENST00000423463 ELOAQ14241 798 aaKnown RBP4.28□□□□□ -1.72
VPS13A-208ENST00000423463 BICDL1Q6ZP65 573 aa4.28□□□□□ -1.72
VPS13A-208ENST00000423463 NPAS3Q8IXF0 933 aa4.28□□□□□ -1.72
VPS13A-208ENST00000423463 C2orf49Q9BVC5 232 aaPredicted RBP4.28□□□□□ -1.72
VPS13A-208ENST00000423463 NUCKS1Q9H1E3 243 aaKnown RBP4.28□□□□□ -1.72
VPS13A-208ENST00000423463 CSB-PGBD3P0DP91 1061 aa4.28□□□□□ -1.72
VPS13A-208ENST00000423463 TEAD4Q15561 434 aa4.28□□□□□ -1.72
VPS13A-208ENST00000423463 OCLNQ16625 522 aa4.28□□□□□ -1.72
VPS13A-208ENST00000423463 TRIM22Q8IYM9 498 aa4.28□□□□□ -1.72
VPS13A-208ENST00000423463 PGBD3Q8N328 593 aa4.28□□□□□ -1.72
VPS13A-208ENST00000423463 HSH2DQ96JZ2 352 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms