RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 AEBP2Q6ZN18 517 aaPredicted RBP12.2□□□□□ -0.46
VPS13A-208ENST00000423463 CHIC1Q5VXU3 224 aa11.84□□□□□ -0.51
VPS13A-208ENST00000423463 PHF23Q9BUL5 403 aaPredicted RBP10.47□□□□□ -0.73
VPS13A-208ENST00000423463 SENP3Q9H4L4 574 aaPredicted RBP10.27□□□□□ -0.76
VPS13A-208ENST00000423463 PLPPR3Q6T4P5 718 aa9.61□□□□□ -0.87
VPS13A-208ENST00000423463 FOXD1Q16676 465 aa9.59□□□□□ -0.87
VPS13A-208ENST00000423463 PPP6R1Q9UPN7 881 aa9.26□□□□□ -0.93
VPS13A-208ENST00000423463 ADRA2BP18089 450 aa9.25□□□□□ -0.93
VPS13A-208ENST00000423463 PIAS4Q8N2W9 510 aaPredicted RBP9.06□□□□□ -0.96
VPS13A-208ENST00000423463 MSH5O43196 834 aa8.78□□□□□ -1
VPS13A-208ENST00000423463 PPP4R3CPQ6ZMV5 832 aa8.49□□□□□ -1.05
VPS13A-208ENST00000423463 MAPK8IP2Q13387 824 aaPredicted RBP8.41□□□□□ -1.06
VPS13A-208ENST00000423463 SCAF1Q9H7N4 1312 aaKnown RBP8.35□□□□□ -1.07
VPS13A-208ENST00000423463 KCNA4P22459 653 aa8.34□□□□□ -1.07
VPS13A-208ENST00000423463 CNKSR2Q8WXI2 1034 aa8.22□□□□□ -1.09
VPS13A-208ENST00000423463 NCBP3Q53F19 620 aaKnown RBP8.2□□□□□ -1.1
VPS13A-208ENST00000423463 DMRT2Q9Y5R5 561 aa8.2□□□□□ -1.1
VPS13A-208ENST00000423463 NPM3O75607 178 aaKnown RBP8.16□□□□□ -1.1
VPS13A-208ENST00000423463 POTEDQ86YR6 584 aa8.07□□□□□ -1.12
VPS13A-208ENST00000423463 RNF216Q9NWF9 866 aaPredicted RBP8.05□□□□□ -1.12
VPS13A-208ENST00000423463 HOXD11P31277 338 aaPredicted RBP8.02□□□□□ -1.12
VPS13A-208ENST00000423463 DCAF8L1A6NGE4 600 aa7.94□□□□□ -1.14
VPS13A-208ENST00000423463 SLC4A1APQ9BWU0 796 aaKnown RBP7.9□□□□□ -1.14
VPS13A-208ENST00000423463 DNAJC5BQ9UF47 199 aa7.8□□□□□ -1.16
VPS13A-208ENST00000423463 EHMT2Q96KQ7 1210 aa7.76□□□□□ -1.17
VPS13A-208ENST00000423463 SLC4A2P04920 1241 aa7.72□□□□□ -1.17
VPS13A-208ENST00000423463 ZBTB22O15209 634 aa7.69□□□□□ -1.18
VPS13A-208ENST00000423463 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.68□□□□□ -1.184e-6■■□□□ 11.8
VPS13A-208ENST00000423463 FOXD4L1Q9NU39 408 aa7.62□□□□□ -1.19
VPS13A-208ENST00000423463 CSRNP3Q8WYN3 585 aa7.61□□□□□ -1.19
VPS13A-208ENST00000423463 U3KPZ7 1027 aaPredicted RBP7.58□□□□□ -1.2
VPS13A-208ENST00000423463 RNF39Q9H2S5 420 aa7.56□□□□□ -1.2
VPS13A-208ENST00000423463 MYCNP04198 464 aaPredicted RBP7.5□□□□□ -1.21
VPS13A-208ENST00000423463 C1QBPQ07021 282 aaKnown RBP7.43□□□□□ -1.22
VPS13A-208ENST00000423463 SPINK5Q9NQ38 1064 aaPredicted RBP7.41□□□□□ -1.22
VPS13A-208ENST00000423463 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-208ENST00000423463 HNRNPUL2Q1KMD3 747 aaKnown RBP7.39□□□□□ -1.23
VPS13A-208ENST00000423463 SAMD1Q6SPF0 538 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-208ENST00000423463 ATF5Q9Y2D1 282 aaPredicted RBP7.38□□□□□ -1.23
VPS13A-208ENST00000423463 CACNB1Q02641 598 aaPredicted RBP7.38□□□□□ -1.23
VPS13A-208ENST00000423463 CAPN15O75808 1086 aa7.35□□□□□ -1.23
VPS13A-208ENST00000423463 TRHP20396 242 aaPredicted RBP7.33□□□□□ -1.24
VPS13A-208ENST00000423463 ATXN8OSP0DMR3 200 aa7.29□□□□□ -1.24
VPS13A-208ENST00000423463 APLP2Q06481 763 aa7.28□□□□□ -1.24
VPS13A-208ENST00000423463 ZNF219Q9P2Y4 722 aaPredicted RBP7.26□□□□□ -1.25
VPS13A-208ENST00000423463 ABCB7O75027 752 aa7.24□□□□□ -1.25
VPS13A-208ENST00000423463 DSG3P32926 999 aa7.21□□□□□ -1.26
VPS13A-208ENST00000423463 POLA2Q14181 598 aa7.19□□□□□ -1.26
VPS13A-208ENST00000423463 MKRN4PQ13434 485 aaPredicted RBP7.04□□□□□ -1.28
VPS13A-208ENST00000423463 FBLN2P98095 1184 aa6.98□□□□□ -1.29
VPS13A-208ENST00000423463 OSCARQ8IYS5 282 aa6.98□□□□□ -1.29
VPS13A-208ENST00000423463 ZBTB12Q9Y330 459 aaPredicted RBP6.98□□□□□ -1.29
VPS13A-208ENST00000423463 FKBP8Q14318 412 aa6.9□□□□□ -1.31
VPS13A-208ENST00000423463 SPDYE4A6NLX3 237 aa6.85□□□□□ -1.31
VPS13A-208ENST00000423463 ZNF692Q9BU19 519 aaPredicted RBP6.83□□□□□ -1.32
VPS13A-208ENST00000423463 SPDYE2BA6NHP3 402 aa6.82□□□□□ -1.32
VPS13A-208ENST00000423463 SPDYE6P0CI01 402 aa6.82□□□□□ -1.32
VPS13A-208ENST00000423463 SPDYE2Q495Y8 402 aa6.82□□□□□ -1.32
VPS13A-208ENST00000423463 RBM42Q9BTD8 480 aaKnown RBP6.81□□□□□ -1.32
VPS13A-208ENST00000423463 SSUH2Q9Y2M2 353 aa6.78□□□□□ -1.32
VPS13A-208ENST00000423463 PABPN1Q86U42 306 aaKnown RBP eCLIP6.76□□□□□ -1.33
VPS13A-208ENST00000423463 AKT1S1Q96B36 256 aa6.73□□□□□ -1.33
VPS13A-208ENST00000423463 REM2Q8IYK8 340 aaPredicted RBP6.71□□□□□ -1.34
VPS13A-208ENST00000423463 PROM2Q8N271 834 aa6.7□□□□□ -1.34
VPS13A-208ENST00000423463 CLEC11AQ9Y240 323 aa6.67□□□□□ -1.34
VPS13A-208ENST00000423463 PITPNM1O00562 1244 aa6.66□□□□□ -1.34
VPS13A-208ENST00000423463 SPDYE1Q8NFV5 336 aaPredicted RBP6.62□□□□□ -1.35
VPS13A-208ENST00000423463 CHRDL2Q6WN34 429 aa6.59□□□□□ -1.35
VPS13A-208ENST00000423463 PRR29P0C7W0 189 aa6.56□□□□□ -1.36
VPS13A-208ENST00000423463 STAG3Q9UJ98 1225 aa6.56□□□□□ -1.36
VPS13A-208ENST00000423463 FBXO3Q9UK99 471 aa6.56□□□□□ -1.36
VPS13A-208ENST00000423463 VASPP50552 380 aaPredicted RBP6.53□□□□□ -1.36
VPS13A-208ENST00000423463 CHADLQ6NUI6 762 aa6.53□□□□□ -1.36
VPS13A-208ENST00000423463 MIER1Q8N108 512 aa6.5□□□□□ -1.37
VPS13A-208ENST00000423463 PIP4P2Q8N4L2 257 aa6.5□□□□□ -1.37
VPS13A-208ENST00000423463 PLCD3Q8N3E9 789 aa6.5□□□□□ -1.37
VPS13A-208ENST00000423463 PRKAR2AP13861 404 aaKnown RBP6.48□□□□□ -1.37
VPS13A-208ENST00000423463 FXR2P51116 673 aaKnown RBP eCLIP6.48□□□□□ -1.372e-6■■■■□ 19.8
VPS13A-208ENST00000423463 CREBZFQ9NS37 354 aa6.48□□□□□ -1.37
VPS13A-208ENST00000423463 IFNLR1Q8IU57 520 aaPredicted RBP6.46□□□□□ -1.38
VPS13A-208ENST00000423463 MNX1P50219 401 aaPredicted RBP6.42□□□□□ -1.38
VPS13A-208ENST00000423463 KLHL34Q8N239 644 aa6.42□□□□□ -1.38
VPS13A-208ENST00000423463 PLEKHG5O94827 1062 aa6.41□□□□□ -1.38
VPS13A-208ENST00000423463 FARP1Q9Y4F1 1045 aaPredicted RBP6.41□□□□□ -1.38
VPS13A-208ENST00000423463 POTEHQ6S545 545 aa6.39□□□□□ -1.39
VPS13A-208ENST00000423463 ZBTB47Q9UFB7 747 aaPredicted RBP6.35□□□□□ -1.39
VPS13A-208ENST00000423463 RASEFQ8IZ41 740 aa6.34□□□□□ -1.39
VPS13A-208ENST00000423463 SPOCK2Q92563 424 aa6.33□□□□□ -1.4
VPS13A-208ENST00000423463 NPM1P06748 294 aaKnown RBP eCLIP6.32□□□□□ -1.4
VPS13A-208ENST00000423463 NUBP1P53384 320 aa6.32□□□□□ -1.4
VPS13A-208ENST00000423463 TSPYL2Q9H2G4 693 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-208ENST00000423463 HAX1O00165 279 aa6.31□□□□□ -1.4
VPS13A-208ENST00000423463 CD44P16070 742 aaKnown RBP6.3□□□□□ -1.4
VPS13A-208ENST00000423463 EVX2Q03828 476 aa6.29□□□□□ -1.4
VPS13A-208ENST00000423463 CIZ1Q9ULV3 898 aaPredicted RBP6.29□□□□□ -1.4
VPS13A-208ENST00000423463 RTN4Q9NQC3 1192 aaKnown RBP6.28□□□□□ -1.4
VPS13A-208ENST00000423463 DCAF8Q5TAQ9 597 aa6.27□□□□□ -1.41
VPS13A-208ENST00000423463 FAM212AQ96EL1 285 aa6.27□□□□□ -1.41
VPS13A-208ENST00000423463 C19orf67A6NJJ6 358 aa6.26□□□□□ -1.41
VPS13A-208ENST00000423463 ZRANB1Q9UGI0 708 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms