RNA–Protein interactions for RNA: ENST00000413658.6

ZNF3-205, Transcript of zinc finger protein 3, human

TSL 1 (best) BASIC

Gene ZNF3, Length 1,441 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF3-205	ENST00000413658	TSPYL4	Q9UJ04	414 aa		13.41	□□□□□ -0.26
ZNF3-205	ENST00000413658	C4B	P0C0L5	1744 aa		13.41	□□□□□ -0.26
ZNF3-205	ENST00000413658	EIF4A1	P60842	406 aa	Known RBP	13.4	□□□□□ -0.26
ZNF3-205	ENST00000413658	ITPK1	Q13572	414 aa		13.4	□□□□□ -0.26
ZNF3-205	ENST00000413658	SLC27A3	Q5K4L6	730 aa		13.4	□□□□□ -0.26
ZNF3-205	ENST00000413658	RBM42	Q9BTD8	480 aa	Known RBP	13.4	□□□□□ -0.26
ZNF3-205	ENST00000413658	LAS1L	Q9Y4W2	734 aa	Known RBP	13.4	□□□□□ -0.26
ZNF3-205	ENST00000413658	UBR3	Q6ZT12	1888 aa		13.4	□□□□□ -0.26
ZNF3-205	ENST00000413658	TTC5	Q8N0Z6	440 aa		13.39	□□□□□ -0.27
ZNF3-205	ENST00000413658	CCNL1	Q9UK58	526 aa	Predicted RBP	13.39	□□□□□ -0.27
ZNF3-205	ENST00000413658	ZBED9	Q6R2W3	1325 aa		13.39	□□□□□ -0.27
ZNF3-205	ENST00000413658	MKRN4P	Q13434	485 aa	Predicted RBP	13.39	□□□□□ -0.27
ZNF3-205	ENST00000413658	VSIG10	Q8N0Z9	540 aa		13.39	□□□□□ -0.27
ZNF3-205	ENST00000413658	TSR2	Q969E8	191 aa	Known RBP	13.39	□□□□□ -0.27
ZNF3-205	ENST00000413658	FMNL2	Q96PY5	1086 aa		13.39	□□□□□ -0.27
ZNF3-205	ENST00000413658	FANCI	Q9NVI1	1328 aa		13.38	□□□□□ -0.27
ZNF3-205	ENST00000413658	QSER1	Q2KHR3	1735 aa		13.38	□□□□□ -0.27
ZNF3-205	ENST00000413658	PRAMEF22	A3QJZ6	481 aa		13.38	□□□□□ -0.27
ZNF3-205	ENST00000413658	ATP6V1A	P38606	617 aa		13.38	□□□□□ -0.27
ZNF3-205	ENST00000413658	GOLGA2	Q08379	1002 aa		13.38	□□□□□ -0.27
ZNF3-205	ENST00000413658	SLFN5	Q08AF3	891 aa		13.38	□□□□□ -0.27
ZNF3-205	ENST00000413658	KRT24	Q2M2I5	525 aa		13.38	□□□□□ -0.27
ZNF3-205	ENST00000413658	TRMT2A	Q8IZ69	625 aa	Known RBP	13.38	□□□□□ -0.27
ZNF3-205	ENST00000413658	LINC00116	Q8NCU8	138 aa		13.38	□□□□□ -0.27
ZNF3-205	ENST00000413658	CDCA7L	Q96GN5	454 aa		13.38	□□□□□ -0.27
ZNF3-205	ENST00000413658	GIGYF1	O75420	1035 aa	Predicted RBP	13.37	□□□□□ -0.27
ZNF3-205	ENST00000413658	DNAJC10	Q8IXB1	793 aa		13.37	□□□□□ -0.27
ZNF3-205	ENST00000413658	SNRPA1	P09661	255 aa	Known RBP	13.36	□□□□□ -0.27
ZNF3-205	ENST00000413658	CYP19A1	P11511	503 aa	Predicted RBP	13.36	□□□□□ -0.27
ZNF3-205	ENST00000413658	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.36	□□□□□ -0.27
ZNF3-205	ENST00000413658		E9PSI1	815 aa		13.35	□□□□□ -0.27
ZNF3-205	ENST00000413658	CENPB	P07199	599 aa	Predicted RBP	13.35	□□□□□ -0.27
ZNF3-205	ENST00000413658	C8orf58	Q8NAV2	365 aa		13.35	□□□□□ -0.27
ZNF3-205	ENST00000413658	AKT1S1	Q96B36	256 aa		13.35	□□□□□ -0.27
ZNF3-205	ENST00000413658	USP16	Q9Y5T5	823 aa		13.35	□□□□□ -0.27
ZNF3-205	ENST00000413658	CACNA1F	O60840	1977 aa		13.34	□□□□□ -0.27
ZNF3-205	ENST00000413658	ZNF827	Q17R98	1081 aa		13.34	□□□□□ -0.27
ZNF3-205	ENST00000413658	DUSP27	Q5VZP5	1158 aa		13.34	□□□□□ -0.27
ZNF3-205	ENST00000413658	INTS5	Q6P9B9	1019 aa	Known RBP	13.34	□□□□□ -0.27
ZNF3-205	ENST00000413658	MYH16	Q9H6N6	1097 aa		13.34	□□□□□ -0.27
ZNF3-205	ENST00000413658	CNTNAP4	Q9C0A0	1308 aa		13.34	□□□□□ -0.27
ZNF3-205	ENST00000413658	CRKL	P46109	303 aa	Known RBP	13.33	□□□□□ -0.28
ZNF3-205	ENST00000413658	RC3H1	Q5TC82	1133 aa	Known RBP	13.33	□□□□□ -0.28
ZNF3-205	ENST00000413658	TSPYL6	Q8N831	410 aa		13.33	□□□□□ -0.28
ZNF3-205	ENST00000413658	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.33	□□□□□ -0.28
ZNF3-205	ENST00000413658	C4A	P0C0L4	1744 aa		13.33	□□□□□ -0.28
ZNF3-205	ENST00000413658	HOXB7	P09629	217 aa		13.32	□□□□□ -0.28
ZNF3-205	ENST00000413658	EXOSC9	Q06265	439 aa	Known RBP	13.32	□□□□□ -0.28
ZNF3-205	ENST00000413658	AMIGO3	Q86WK7	504 aa		13.32	□□□□□ -0.28
ZNF3-205	ENST00000413658	STARD3NL	O95772	234 aa		13.31	□□□□□ -0.28
ZNF3-205	ENST00000413658	CASZ1	Q86V15	1759 aa		13.31	□□□□□ -0.28
ZNF3-205	ENST00000413658	ELL2	O00472	640 aa	Predicted RBP	13.3	□□□□□ -0.28
ZNF3-205	ENST00000413658	A1BG	P04217	495 aa		13.3	□□□□□ -0.28
ZNF3-205	ENST00000413658	CCDC87	Q9NVE4	849 aa		13.3	□□□□□ -0.28
ZNF3-205	ENST00000413658	SOS1	Q07889	1333 aa	Predicted RBP	13.3	□□□□□ -0.28
ZNF3-205	ENST00000413658	NBPF26	B4DH59	902 aa		13.3	□□□□□ -0.28
ZNF3-205	ENST00000413658	HMGB2	P26583	209 aa	Known RBP	13.3	□□□□□ -0.28
ZNF3-205	ENST00000413658	PDIA6	Q15084	440 aa		13.3	□□□□□ -0.28
ZNF3-205	ENST00000413658	SLC15A2	Q16348	729 aa		13.3	□□□□□ -0.28
ZNF3-205	ENST00000413658	NBPF14	Q5TI25	921 aa		13.3	□□□□□ -0.28
ZNF3-205	ENST00000413658	NBPF10	Q6P3W6	841 aa	Known RBP	13.3	□□□□□ -0.28
ZNF3-205	ENST00000413658	NBPF15	Q8N660	670 aa		13.3	□□□□□ -0.28
ZNF3-205	ENST00000413658	YTHDC1	Q96MU7	727 aa	Known RBP	13.3	□□□□□ -0.28
ZNF3-205	ENST00000413658	ZBTB1	Q9Y2K1	713 aa		13.3	□□□□□ -0.28
ZNF3-205	ENST00000413658	VAMP4	O75379	141 aa		13.29	□□□□□ -0.28
ZNF3-205	ENST00000413658	TWISTNB	Q3B726	338 aa	Predicted RBP	13.29	□□□□□ -0.28
ZNF3-205	ENST00000413658	SMIM5	Q71RC9	77 aa		13.29	□□□□□ -0.28
ZNF3-205	ENST00000413658	LRP10	Q7Z4F1	713 aa		13.29	□□□□□ -0.28
ZNF3-205	ENST00000413658	BCOR	Q6W2J9	1755 aa		13.28	□□□□□ -0.28
ZNF3-205	ENST00000413658	GNPAT	O15228	680 aa		13.28	□□□□□ -0.28
ZNF3-205	ENST00000413658	RPS6KA4	O75676	772 aa		13.28	□□□□□ -0.28
ZNF3-205	ENST00000413658	EIF2S2	P20042	333 aa	Known RBP	13.28	□□□□□ -0.28
ZNF3-205	ENST00000413658	PIP4K2A	P48426	406 aa	Predicted RBP	13.28	□□□□□ -0.28
ZNF3-205	ENST00000413658	AK7	Q96M32	723 aa		13.28	□□□□□ -0.28
ZNF3-205	ENST00000413658	STK32B	Q9NY57	414 aa		13.28	□□□□□ -0.28
ZNF3-205	ENST00000413658	PNPLA7	Q6ZV29	1317 aa		13.28	□□□□□ -0.28
ZNF3-205	ENST00000413658	EIF5	P55010	431 aa	Known RBP	13.27	□□□□□ -0.29
ZNF3-205	ENST00000413658	FKBP8	Q14318	412 aa		13.27	□□□□□ -0.29
ZNF3-205	ENST00000413658	PROSER3	Q2NL68	480 aa		13.27	□□□□□ -0.29
ZNF3-205	ENST00000413658	HDGFL1	Q5TGJ6	251 aa		13.27	□□□□□ -0.29
ZNF3-205	ENST00000413658	NECTIN2	Q92692	538 aa		13.27	□□□□□ -0.29
ZNF3-205	ENST00000413658	ERBB4	Q15303	1308 aa		13.27	□□□□□ -0.29
ZNF3-205	ENST00000413658	COL24A1	Q17RW2	1714 aa		13.27	□□□□□ -0.29
ZNF3-205	ENST00000413658	SCN7A	Q01118	1682 aa		13.26	□□□□□ -0.29
ZNF3-205	ENST00000413658	CANX	P27824	592 aa	Known RBP	13.26	□□□□□ -0.29
ZNF3-205	ENST00000413658	SSFA2	P28290	1259 aa		13.26	□□□□□ -0.29
ZNF3-205	ENST00000413658	IL6ST	P40189	918 aa	Predicted RBP	13.26	□□□□□ -0.29
ZNF3-205	ENST00000413658	TFCP2L1	Q9NZI6	479 aa		13.26	□□□□□ -0.29
ZNF3-205	ENST00000413658	CHPF2	Q9P2E5	772 aa		13.26	□□□□□ -0.29
ZNF3-205	ENST00000413658	NUP98	P52948	1817 aa		13.25	□□□□□ -0.29
ZNF3-205	ENST00000413658	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.25	□□□□□ -0.29
ZNF3-205	ENST00000413658	R3HDM1	Q15032	1099 aa	Known RBP	13.25	□□□□□ -0.29
ZNF3-205	ENST00000413658	COL23A1	Q86Y22	540 aa	Predicted RBP	13.25	□□□□□ -0.29
ZNF3-205	ENST00000413658	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.25	□□□□□ -0.29
ZNF3-205	ENST00000413658	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.25	□□□□□ -0.29
ZNF3-205	ENST00000413658	RTCB	Q9Y3I0	505 aa	Known RBP	13.25	□□□□□ -0.29
ZNF3-205	ENST00000413658	COL15A1	P39059	1388 aa		13.25	□□□□□ -0.29
ZNF3-205	ENST00000413658	ANXA1	P04083	346 aa		13.24	□□□□□ -0.29
ZNF3-205	ENST00000413658	CCDC30	Q5VVM6	783 aa		13.24	□□□□□ -0.29
ZNF3-205	ENST00000413658	ARHGEF1	Q92888	912 aa	Known RBP	13.24	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms