RNA–Protein interactions for RNA: ENST00000402434.6

RTN4-207, Transcript of reticulon 4, humanhuman

TSL 5 BASIC

Gene RTN4, Length 1,456 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-207ENST00000402434 APAF1O14727 1248 aa25.23■■□□□ 1.63
RTN4-207ENST00000402434 SNRPA1P09661 255 aaKnown RBP25.21■■□□□ 1.63
RTN4-207ENST00000402434 BABAM1Q9NWV8 329 aa25.21■■□□□ 1.63
RTN4-207ENST00000402434 POLD1P28340 1107 aa25.21■■□□□ 1.63
RTN4-207ENST00000402434 ARXQ96QS3 562 aa25.21■■□□□ 1.63
RTN4-207ENST00000402434 ZBTB1Q9Y2K1 713 aa25.21■■□□□ 1.63
RTN4-207ENST00000402434 SOS1Q07889 1333 aaPredicted RBP25.2■■□□□ 1.63
RTN4-207ENST00000402434 RFC4P35249 363 aa25.2■■□□□ 1.62
RTN4-207ENST00000402434 MSL1Q68DK7 614 aa25.2■■□□□ 1.62
RTN4-207ENST00000402434 USP16Q9Y5T5 823 aa25.2■■□□□ 1.62
RTN4-207ENST00000402434 KDM3BQ7LBC6 1761 aa25.19■■□□□ 1.62
RTN4-207ENST00000402434 EIF4A1P60842 406 aaKnown RBP25.18■■□□□ 1.62
RTN4-207ENST00000402434 PRAMEF22A3QJZ6 481 aa25.17■■□□□ 1.62
RTN4-207ENST00000402434 TSPYL4Q9UJ04 414 aa25.16■■□□□ 1.62
RTN4-207ENST00000402434 CHL1O00533 1208 aa25.15■■□□□ 1.62
RTN4-207ENST00000402434 GIGYF1O75420 1035 aaPredicted RBP25.15■■□□□ 1.62
RTN4-207ENST00000402434 CANXP27824 592 aaKnown RBP25.15■■□□□ 1.62
RTN4-207ENST00000402434 EIF5P55010 431 aaKnown RBP25.15■■□□□ 1.62
RTN4-207ENST00000402434 NLGN1Q8N2Q7 840 aa25.15■■□□□ 1.62
RTN4-207ENST00000402434 C4AP0C0L4 1744 aa25.15■■□□□ 1.62
RTN4-207ENST00000402434 GYS1P13807 737 aa25.15■■□□□ 1.62
RTN4-207ENST00000402434 USP42Q9H9J4 1324 aaKnown RBP25.14■■□□□ 1.62
RTN4-207ENST00000402434 A1BGP04217 495 aa25.14■■□□□ 1.61
RTN4-207ENST00000402434 FHDC1Q9C0D6 1143 aaPredicted RBP25.14■■□□□ 1.61
RTN4-207ENST00000402434 COL15A1P39059 1388 aa25.14■■□□□ 1.61
RTN4-207ENST00000402434 IL6STP40189 918 aaPredicted RBP25.13■■□□□ 1.61
RTN4-207ENST00000402434 NCBP3Q53F19 620 aaKnown RBP25.12■■□□□ 1.61
RTN4-207ENST00000402434 SYT17Q9BSW7 474 aa25.12■■□□□ 1.61
RTN4-207ENST00000402434 SRP68Q9UHB9 627 aaKnown RBP25.12■■□□□ 1.61
RTN4-207ENST00000402434 CFAP44Q96MT7 982 aa25.11■■□□□ 1.61
RTN4-207ENST00000402434 NARFQ9UHQ1 456 aa25.11■■□□□ 1.61
RTN4-207ENST00000402434 CCDC27Q2M243 656 aa25.1■■□□□ 1.61
RTN4-207ENST00000402434 ZPR1O75312 459 aa25.09■■□□□ 1.61
RTN4-207ENST00000402434 CALD1Q05682 793 aaKnown RBP25.09■■□□□ 1.61
RTN4-207ENST00000402434 FAM9BQ8IZU0 186 aa25.09■■□□□ 1.61
RTN4-207ENST00000402434 A0A087WZG4 1122 aa25.09■■□□□ 1.61
RTN4-207ENST00000402434 MMP10P09238 476 aa25.09■■□□□ 1.61
RTN4-207ENST00000402434 ZNF853P0CG23 659 aa25.09■■□□□ 1.61
RTN4-207ENST00000402434 NBPF26B4DH59 902 aa25.08■■□□□ 1.6
RTN4-207ENST00000402434 FKBP8Q14318 412 aa25.08■■□□□ 1.6
RTN4-207ENST00000402434 USPL1Q5W0Q7 1092 aa25.08■■□□□ 1.6
RTN4-207ENST00000402434 NBPF10Q6P3W6 841 aaKnown RBP25.08■■□□□ 1.6
RTN4-207ENST00000402434 NBPF15Q8N660 670 aa25.08■■□□□ 1.6
RTN4-207ENST00000402434 LAS1LQ9Y4W2 734 aaKnown RBP25.08■■□□□ 1.6
RTN4-207ENST00000402434 CCER2I3L3R5 266 aa25.06■■□□□ 1.6
RTN4-207ENST00000402434 BCL2L12Q9HB09 334 aa25.06■■□□□ 1.6
RTN4-207ENST00000402434 IFT57Q9NWB7 429 aa25.06■■□□□ 1.6
RTN4-207ENST00000402434 LAMB4A4D0S4 1761 aa25.05■■□□□ 1.6
RTN4-207ENST00000402434 PIP4K2AP48426 406 aaPredicted RBP25.05■■□□□ 1.6
RTN4-207ENST00000402434 WWC1Q8IX03 1113 aa25.05■■□□□ 1.6
RTN4-207ENST00000402434 GNAI1P63096 354 aa25.04■■□□□ 1.6
RTN4-207ENST00000402434 NPM2Q86SE8 214 aaKnown RBP25.04■■□□□ 1.6
RTN4-207ENST00000402434 ZNF330Q9Y3S2 320 aaPredicted RBP25.04■■□□□ 1.6
RTN4-207ENST00000402434 TM4SF1P30408 202 aa25.03■■□□□ 1.6
RTN4-207ENST00000402434 DIEXFQ68CQ4 756 aaKnown RBP25.03■■□□□ 1.6
RTN4-207ENST00000402434 MBIPQ9NS73 344 aa25.03■■□□□ 1.6
RTN4-207ENST00000402434 TBC1D2BQ9UPU7 963 aa25.03■■□□□ 1.6
RTN4-207ENST00000402434 CD2APQ9Y5K6 639 aa25.03■■□□□ 1.6
RTN4-207ENST00000402434 SENP3-EIF4A1A0A087X0R7 540 aa25.02■■□□□ 1.6
RTN4-207ENST00000402434 ERBB4Q15303 1308 aa25.01■■□□□ 1.59
RTN4-207ENST00000402434 KRT24Q2M2I5 525 aa25.01■■□□□ 1.59
RTN4-207ENST00000402434 DZIP3Q86Y13 1208 aaKnown RBP25.01■■□□□ 1.59
RTN4-207ENST00000402434 KLHL34Q8N239 644 aa25.01■■□□□ 1.59
RTN4-207ENST00000402434 PARP3Q9Y6F1 533 aa25.01■■□□□ 1.59
RTN4-207ENST00000402434 CAMTA2O94983 1202 aa25■■□□□ 1.59
RTN4-207ENST00000402434 DDR1Q08345 913 aa25■■□□□ 1.59
RTN4-207ENST00000402434 NGEFQ8N5V2 710 aa25■■□□□ 1.59
RTN4-207ENST00000402434 HOXB7P09629 217 aa24.99■■□□□ 1.59
RTN4-207ENST00000402434 NFIXQ14938 502 aa24.99■■□□□ 1.59
RTN4-207ENST00000402434 POLRMTO00411 1230 aaKnown RBP24.98■■□□□ 1.59
RTN4-207ENST00000402434 NLGN2Q8NFZ4 835 aa24.98■■□□□ 1.59
RTN4-207ENST00000402434 IL16Q14005 1332 aa24.98■■□□□ 1.59
RTN4-207ENST00000402434 RGL2O15211 777 aa24.97■■□□□ 1.59
RTN4-207ENST00000402434 EIF2S2P20042 333 aaKnown RBP24.97■■□□□ 1.59
RTN4-207ENST00000402434 PDIA6Q15084 440 aa24.97■■□□□ 1.59
RTN4-207ENST00000402434 SCN7AQ01118 1682 aa24.96■■□□□ 1.59
RTN4-207ENST00000402434 CLEC4GQ6UXB4 293 aa24.96■■□□□ 1.59
RTN4-207ENST00000402434 LRP10Q7Z4F1 713 aa24.96■■□□□ 1.59
RTN4-207ENST00000402434 WDR63Q8IWG1 891 aa24.96■■□□□ 1.59
RTN4-207ENST00000402434 MYL6BP14649 208 aa24.95■■□□□ 1.58
RTN4-207ENST00000402434 DUSP27Q5VZP5 1158 aa24.95■■□□□ 1.58
RTN4-207ENST00000402434 TBC1D9BQ66K14 1250 aa24.95■■□□□ 1.58
RTN4-207ENST00000402434 SALL2Q9Y467 1007 aaPredicted RBP24.94■■□□□ 1.58
RTN4-207ENST00000402434 C10orf71Q711Q0 1435 aa24.94■■□□□ 1.58
RTN4-207ENST00000402434 MIER1Q8N108 512 aa24.93■■□□□ 1.58
RTN4-207ENST00000402434 BCORQ6W2J9 1755 aa24.92■■□□□ 1.58
RTN4-207ENST00000402434 KIF13BQ9NQT8 1826 aa24.92■■□□□ 1.58
RTN4-207ENST00000402434 ERVV-1B6SEH8 477 aa24.91■■□□□ 1.58
RTN4-207ENST00000402434 PROSER3Q2NL68 480 aa24.91■■□□□ 1.58
RTN4-207ENST00000402434 HDGFL1Q5TGJ6 251 aa24.91■■□□□ 1.58
RTN4-207ENST00000402434 ZNF652Q9Y2D9 606 aa24.91■■□□□ 1.58
RTN4-207ENST00000402434 SERPINB2P05120 415 aa24.9■■□□□ 1.58
RTN4-207ENST00000402434 TGFB2P61812 414 aa24.9■■□□□ 1.58
RTN4-207ENST00000402434 BICDL1Q6ZP65 573 aa24.9■■□□□ 1.58
RTN4-207ENST00000402434 C8orf58Q8NAV2 365 aa24.9■■□□□ 1.58
RTN4-207ENST00000402434 NECTIN2Q92692 538 aa24.9■■□□□ 1.58
RTN4-207ENST00000402434 TSR2Q969E8 191 aaKnown RBP24.9■■□□□ 1.58
RTN4-207ENST00000402434 DDX21Q9NR30 783 aaKnown RBP eCLIP24.9■■□□□ 1.584e-6■■■■□ 21
RTN4-207ENST00000402434 DCAF8L1A6NGE4 600 aa24.89■■□□□ 1.58
RTN4-207ENST00000402434 TTLL7Q6ZT98 887 aa24.89■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 309.7 ms