RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 SGIP1Q9BQI5 828 aa28.47■■■□□ 2.15
CLN3-207ENST00000395653 SNRPA1P09661 255 aaKnown RBP28.45■■■□□ 2.15
CLN3-207ENST00000395653 TSPYL4Q9UJ04 414 aa28.43■■■□□ 2.14
CLN3-207ENST00000395653 ZBTB1Q9Y2K1 713 aa28.43■■■□□ 2.14
CLN3-207ENST00000395653 SOS1Q07889 1333 aaPredicted RBP28.43■■■□□ 2.14
CLN3-207ENST00000395653 EIF4A1P60842 406 aaKnown RBP28.43■■■□□ 2.14
CLN3-207ENST00000395653 DIEXFQ68CQ4 756 aaKnown RBP28.43■■■□□ 2.14
CLN3-207ENST00000395653 ARHGEF1Q92888 912 aaKnown RBP28.43■■■□□ 2.14
CLN3-207ENST00000395653 CCER2I3L3R5 266 aa28.42■■■□□ 2.14
CLN3-207ENST00000395653 FAM9BQ8IZU0 186 aa28.42■■■□□ 2.14
CLN3-207ENST00000395653 PPP1R1BQ9UD71 204 aaPredicted RBP28.42■■■□□ 2.14
CLN3-207ENST00000395653 C4AP0C0L4 1744 aa28.41■■■□□ 2.14
CLN3-207ENST00000395653 POLD1P28340 1107 aa28.41■■■□□ 2.14
CLN3-207ENST00000395653 NCBP3Q53F19 620 aaKnown RBP28.41■■■□□ 2.14
CLN3-207ENST00000395653 RFC4P35249 363 aa28.4■■■□□ 2.14
CLN3-207ENST00000395653 USP16Q9Y5T5 823 aa28.4■■■□□ 2.14
CLN3-207ENST00000395653 PRAMEF22A3QJZ6 481 aa28.39■■■□□ 2.14
CLN3-207ENST00000395653 CHL1O00533 1208 aa28.39■■■□□ 2.14
CLN3-207ENST00000395653 CALD1Q05682 793 aaKnown RBP28.39■■■□□ 2.14
CLN3-207ENST00000395653 CCDC27Q2M243 656 aa28.39■■■□□ 2.14
CLN3-207ENST00000395653 MSL1Q68DK7 614 aa28.39■■■□□ 2.14
CLN3-207ENST00000395653 LAMB4A4D0S4 1761 aa28.38■■■□□ 2.13
CLN3-207ENST00000395653 GIGYF1O75420 1035 aaPredicted RBP28.38■■■□□ 2.13
CLN3-207ENST00000395653 COL15A1P39059 1388 aa28.37■■■□□ 2.13
CLN3-207ENST00000395653 CANXP27824 592 aaKnown RBP28.37■■■□□ 2.13
CLN3-207ENST00000395653 CFAP44Q96MT7 982 aa28.37■■■□□ 2.13
CLN3-207ENST00000395653 ARXQ96QS3 562 aa28.36■■■□□ 2.13
CLN3-207ENST00000395653 A1BGP04217 495 aa28.35■■■□□ 2.13
CLN3-207ENST00000395653 IL6STP40189 918 aaPredicted RBP28.35■■■□□ 2.13
CLN3-207ENST00000395653 EIF5P55010 431 aaKnown RBP28.35■■■□□ 2.13
CLN3-207ENST00000395653 USP42Q9H9J4 1324 aaKnown RBP28.35■■■□□ 2.13
CLN3-207ENST00000395653 LAS1LQ9Y4W2 734 aaKnown RBP28.35■■■□□ 2.13
CLN3-207ENST00000395653 GYS1P13807 737 aa28.34■■■□□ 2.13
CLN3-207ENST00000395653 IFT57Q9NWB7 429 aa28.34■■■□□ 2.13
CLN3-207ENST00000395653 ZNF853P0CG23 659 aa28.33■■■□□ 2.13
CLN3-207ENST00000395653 NLGN1Q8N2Q7 840 aa28.33■■■□□ 2.13
CLN3-207ENST00000395653 A0A087WZG4 1122 aa28.32■■■□□ 2.12
CLN3-207ENST00000395653 GNAI1P63096 354 aa28.32■■■□□ 2.12
CLN3-207ENST00000395653 WWC1Q8IX03 1113 aa28.32■■■□□ 2.12
CLN3-207ENST00000395653 SRP68Q9UHB9 627 aaKnown RBP28.31■■■□□ 2.12
CLN3-207ENST00000395653 NARFQ9UHQ1 456 aa28.31■■■□□ 2.12
CLN3-207ENST00000395653 ZPR1O75312 459 aa28.3■■■□□ 2.12
CLN3-207ENST00000395653 SENP3-EIF4A1A0A087X0R7 540 aa28.29■■■□□ 2.12
CLN3-207ENST00000395653 NGEFQ8N5V2 710 aa28.29■■■□□ 2.12
CLN3-207ENST00000395653 NPM2Q86SE8 214 aaKnown RBP28.28■■■□□ 2.12
CLN3-207ENST00000395653 MBIPQ9NS73 344 aa28.28■■■□□ 2.12
CLN3-207ENST00000395653 NBPF26B4DH59 902 aa28.27■■■□□ 2.12
CLN3-207ENST00000395653 USPL1Q5W0Q7 1092 aa28.27■■■□□ 2.12
CLN3-207ENST00000395653 NBPF10Q6P3W6 841 aaKnown RBP28.27■■■□□ 2.12
CLN3-207ENST00000395653 NBPF15Q8N660 670 aa28.27■■■□□ 2.12
CLN3-207ENST00000395653 ZNF330Q9Y3S2 320 aaPredicted RBP28.27■■■□□ 2.12
CLN3-207ENST00000395653 PIP4K2AP48426 406 aaPredicted RBP28.26■■■□□ 2.12
CLN3-207ENST00000395653 FHDC1Q9C0D6 1143 aaPredicted RBP28.26■■■□□ 2.12
CLN3-207ENST00000395653 ERBB4Q15303 1308 aa28.26■■■□□ 2.11
CLN3-207ENST00000395653 MMP10P09238 476 aa28.26■■■□□ 2.11
CLN3-207ENST00000395653 IL16Q14005 1332 aa28.25■■■□□ 2.11
CLN3-207ENST00000395653 FKBP8Q14318 412 aa28.25■■■□□ 2.11
CLN3-207ENST00000395653 MIER1Q8N108 512 aa28.25■■■□□ 2.11
CLN3-207ENST00000395653 SCN7AQ01118 1682 aa28.24■■■□□ 2.11
CLN3-207ENST00000395653 SYT17Q9BSW7 474 aa28.24■■■□□ 2.11
CLN3-207ENST00000395653 HOXB7P09629 217 aa28.23■■■□□ 2.11
CLN3-207ENST00000395653 KRT24Q2M2I5 525 aa28.23■■■□□ 2.11
CLN3-207ENST00000395653 SALL2Q9Y467 1007 aaPredicted RBP28.23■■■□□ 2.11
CLN3-207ENST00000395653 BCL2L12Q9HB09 334 aa28.22■■■□□ 2.11
CLN3-207ENST00000395653 TBC1D2BQ9UPU7 963 aa28.22■■■□□ 2.11
CLN3-207ENST00000395653 DZIP3Q86Y13 1208 aaKnown RBP28.21■■■□□ 2.11
CLN3-207ENST00000395653 WDR63Q8IWG1 891 aa28.21■■■□□ 2.11
CLN3-207ENST00000395653 EIF2S2P20042 333 aaKnown RBP28.2■■■□□ 2.11
CLN3-207ENST00000395653 BCORQ6W2J9 1755 aa28.2■■■□□ 2.1
CLN3-207ENST00000395653 CAMTA2O94983 1202 aa28.18■■■□□ 2.1
CLN3-207ENST00000395653 TM4SF1P30408 202 aa28.18■■■□□ 2.1
CLN3-207ENST00000395653 KLHL34Q8N239 644 aa28.18■■■□□ 2.1
CLN3-207ENST00000395653 PARP3Q9Y6F1 533 aa28.18■■■□□ 2.1
CLN3-207ENST00000395653 CD2APQ9Y5K6 639 aa28.18■■■□□ 2.1
CLN3-207ENST00000395653 RGL2O15211 777 aa28.17■■■□□ 2.1
CLN3-207ENST00000395653 DUSP27Q5VZP5 1158 aa28.17■■■□□ 2.1
CLN3-207ENST00000395653 MYL6BP14649 208 aa28.16■■■□□ 2.1
CLN3-207ENST00000395653 DDR1Q08345 913 aa28.16■■■□□ 2.1
CLN3-207ENST00000395653 PDIA6Q15084 440 aa28.16■■■□□ 2.1
CLN3-207ENST00000395653 NFIXQ14938 502 aa28.15■■■□□ 2.1
CLN3-207ENST00000395653 HDGFL1Q5TGJ6 251 aa28.15■■■□□ 2.1
CLN3-207ENST00000395653 TSR2Q969E8 191 aaKnown RBP28.15■■■□□ 2.1
CLN3-207ENST00000395653 POLRMTO00411 1230 aaKnown RBP28.14■■■□□ 2.1
CLN3-207ENST00000395653 CLEC4GQ6UXB4 293 aa28.14■■■□□ 2.1
CLN3-207ENST00000395653 LRP10Q7Z4F1 713 aa28.14■■■□□ 2.1
CLN3-207ENST00000395653 ZNF521Q96K83 1311 aa28.14■■■□□ 2.09
CLN3-207ENST00000395653 NECTIN2Q92692 538 aa28.13■■■□□ 2.09
CLN3-207ENST00000395653 C10orf71Q711Q0 1435 aa28.12■■■□□ 2.09
CLN3-207ENST00000395653 C8orf58Q8NAV2 365 aa28.12■■■□□ 2.09
CLN3-207ENST00000395653 DDX21Q9NR30 783 aaKnown RBP eCLIP28.12■■■□□ 2.09
CLN3-207ENST00000395653 ZNF652Q9Y2D9 606 aa28.12■■■□□ 2.09
CLN3-207ENST00000395653 PROSER3Q2NL68 480 aa28.11■■■□□ 2.09
CLN3-207ENST00000395653 TBC1D9BQ66K14 1250 aa28.11■■■□□ 2.09
CLN3-207ENST00000395653 NLGN2Q8NFZ4 835 aa28.11■■■□□ 2.09
CLN3-207ENST00000395653 FANCIQ9NVI1 1328 aa28.11■■■□□ 2.09
CLN3-207ENST00000395653 KIF13BQ9NQT8 1826 aa28.1■■■□□ 2.09
CLN3-207ENST00000395653 ERVV-1B6SEH8 477 aa28.09■■■□□ 2.09
CLN3-207ENST00000395653 ELL2O00472 640 aaPredicted RBP28.09■■■□□ 2.09
CLN3-207ENST00000395653 KIF6Q6ZMV9 814 aa28.09■■■□□ 2.09
CLN3-207ENST00000395653 TTLL7Q6ZT98 887 aa28.09■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 186.4 ms