RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 PNNQ9H307 717 aaKnown RBP15.86■□□□□ 0.13
SCFD1-201ENST00000311943 QSER1Q2KHR3 1735 aa15.86■□□□□ 0.13
SCFD1-201ENST00000311943 ZNF831Q5JPB2 1677 aa15.85■□□□□ 0.13
SCFD1-201ENST00000311943 FMNL2Q96PY5 1086 aa15.85■□□□□ 0.13
SCFD1-201ENST00000311943 CCDC87Q9NVE4 849 aa15.85■□□□□ 0.13
SCFD1-201ENST00000311943 EIF4A1P60842 406 aaKnown RBP15.85■□□□□ 0.13
SCFD1-201ENST00000311943 TRAPPC3LQ5T215 181 aa15.85■□□□□ 0.13
SCFD1-201ENST00000311943 NECTIN2Q92692 538 aa15.85■□□□□ 0.13
SCFD1-201ENST00000311943 WWC3Q9ULE0 1092 aa15.85■□□□□ 0.13
SCFD1-201ENST00000311943 C4AP0C0L4 1744 aa15.84■□□□□ 0.13
SCFD1-201ENST00000311943 SSFA2P28290 1259 aa15.84■□□□□ 0.13
SCFD1-201ENST00000311943 DIEXFQ68CQ4 756 aaKnown RBP15.84■□□□□ 0.13
SCFD1-201ENST00000311943 FHDC1Q9C0D6 1143 aaPredicted RBP15.84■□□□□ 0.13
SCFD1-201ENST00000311943 PPP1R1BQ9UD71 204 aaPredicted RBP15.84■□□□□ 0.13
SCFD1-201ENST00000311943 KDM3BQ7LBC6 1761 aa15.84■□□□□ 0.13
SCFD1-201ENST00000311943 NBPF26B4DH59 902 aa15.84■□□□□ 0.13
SCFD1-201ENST00000311943 RC3H1Q5TC82 1133 aaKnown RBP15.84■□□□□ 0.13
SCFD1-201ENST00000311943 NBPF10Q6P3W6 841 aaKnown RBP15.84■□□□□ 0.13
SCFD1-201ENST00000311943 NBPF15Q8N660 670 aa15.84■□□□□ 0.13
SCFD1-201ENST00000311943 TSPYL4Q9UJ04 414 aa15.84■□□□□ 0.13
SCFD1-201ENST00000311943 GYS1P13807 737 aa15.83■□□□□ 0.12
SCFD1-201ENST00000311943 FKBP8Q14318 412 aa15.83■□□□□ 0.12
SCFD1-201ENST00000311943 SOS1Q07889 1333 aaPredicted RBP15.83■□□□□ 0.12
SCFD1-201ENST00000311943 ANXA1P04083 346 aa15.82■□□□□ 0.12
SCFD1-201ENST00000311943 USPL1Q5W0Q7 1092 aa15.82■□□□□ 0.12
SCFD1-201ENST00000311943 VSIG10Q8N0Z9 540 aa15.82■□□□□ 0.12
SCFD1-201ENST00000311943 NGEFQ8N5V2 710 aa15.82■□□□□ 0.12
SCFD1-201ENST00000311943 ARXQ96QS3 562 aa15.82■□□□□ 0.12
SCFD1-201ENST00000311943 TBC1D2BQ9UPU7 963 aa15.82■□□□□ 0.12
SCFD1-201ENST00000311943 GIGYF1O75420 1035 aaPredicted RBP15.82■□□□□ 0.12
SCFD1-201ENST00000311943 NLGN2Q8NFZ4 835 aa15.82■□□□□ 0.12
SCFD1-201ENST00000311943 BCL2L12Q9HB09 334 aa15.82■□□□□ 0.12
SCFD1-201ENST00000311943 CICQ96RK0 1608 aaPredicted RBP15.81■□□□□ 0.12
SCFD1-201ENST00000311943 RFC4P35249 363 aa15.81■□□□□ 0.12
SCFD1-201ENST00000311943 ELL2O00472 640 aaPredicted RBP15.8■□□□□ 0.12
SCFD1-201ENST00000311943 CHL1O00533 1208 aa15.8■□□□□ 0.12
SCFD1-201ENST00000311943 SNRPA1P09661 255 aaKnown RBP15.8■□□□□ 0.12
SCFD1-201ENST00000311943 EIF2S2P20042 333 aaKnown RBP15.8■□□□□ 0.12
SCFD1-201ENST00000311943 SLC16A10Q8TF71 515 aa15.8■□□□□ 0.12
SCFD1-201ENST00000311943 TSR2Q969E8 191 aaKnown RBP15.8■□□□□ 0.12
SCFD1-201ENST00000311943 SYT17Q9BSW7 474 aa15.8■□□□□ 0.12
SCFD1-201ENST00000311943 SPINK5Q9NQ38 1064 aaPredicted RBP15.8■□□□□ 0.12
SCFD1-201ENST00000311943 MBIPQ9NS73 344 aa15.8■□□□□ 0.12
SCFD1-201ENST00000311943 USP42Q9H9J4 1324 aaKnown RBP15.8■□□□□ 0.12
SCFD1-201ENST00000311943 COL15A1P39059 1388 aa15.79■□□□□ 0.12
SCFD1-201ENST00000311943 MMP10P09238 476 aa15.79■□□□□ 0.12
SCFD1-201ENST00000311943 EIF5P55010 431 aaKnown RBP15.79■□□□□ 0.12
SCFD1-201ENST00000311943 PROSER3Q2NL68 480 aa15.79■□□□□ 0.12
SCFD1-201ENST00000311943 STARD3NLO95772 234 aa15.78■□□□□ 0.12
SCFD1-201ENST00000311943 ZNF428Q96B54 188 aa15.78■□□□□ 0.12
SCFD1-201ENST00000311943 MYL6BP14649 208 aa15.78■□□□□ 0.12
SCFD1-201ENST00000311943 DDR1Q08345 913 aa15.78■□□□□ 0.12
SCFD1-201ENST00000311943 BICDL1Q6ZP65 573 aa15.78■□□□□ 0.12
SCFD1-201ENST00000311943 WWC1Q8IX03 1113 aa15.78■□□□□ 0.12
SCFD1-201ENST00000311943 CCDC24Q8N4L8 307 aa15.78■□□□□ 0.12
SCFD1-201ENST00000311943 FLAD1Q8NFF5 587 aa15.78■□□□□ 0.12
SCFD1-201ENST00000311943 COL24A1Q17RW2 1714 aa15.78■□□□□ 0.12
SCFD1-201ENST00000311943 LMOD3Q0VAK6 560 aa15.77■□□□□ 0.11
SCFD1-201ENST00000311943 ZNF853P0CG23 659 aa15.76■□□□□ 0.11
SCFD1-201ENST00000311943 TSPYL6Q8N831 410 aa15.76■□□□□ 0.11
SCFD1-201ENST00000311943 TCERG1O14776 1098 aaKnown RBP15.75■□□□□ 0.11
SCFD1-201ENST00000311943 POLD1P28340 1107 aa15.75■□□□□ 0.11
SCFD1-201ENST00000311943 C8orf58Q8NAV2 365 aa15.75■□□□□ 0.11
SCFD1-201ENST00000311943 PDIA6Q15084 440 aa15.75■□□□□ 0.11
SCFD1-201ENST00000311943 TTLL7Q6ZT98 887 aa15.75■□□□□ 0.11
SCFD1-201ENST00000311943 CFAP44Q96MT7 982 aa15.75■□□□□ 0.11
SCFD1-201ENST00000311943 NFIXQ14938 502 aa15.74■□□□□ 0.11
SCFD1-201ENST00000311943 HLFQ16534 295 aa15.74■□□□□ 0.11
SCFD1-201ENST00000311943 TBC1D9BQ66K14 1250 aa15.74■□□□□ 0.11
SCFD1-201ENST00000311943 NARFQ9UHQ1 456 aa15.74■□□□□ 0.11
SCFD1-201ENST00000311943 ADRA2BP18089 450 aa15.73■□□□□ 0.11
SCFD1-201ENST00000311943 ZPR1O75312 459 aa15.73■□□□□ 0.11
SCFD1-201ENST00000311943 CAMTA2O94983 1202 aa15.73■□□□□ 0.11
SCFD1-201ENST00000311943 IL6STP40189 918 aaPredicted RBP15.73■□□□□ 0.11
SCFD1-201ENST00000311943 LRP10Q7Z4F1 713 aa15.73■□□□□ 0.11
SCFD1-201ENST00000311943 DZIP3Q86Y13 1208 aaKnown RBP15.73■□□□□ 0.11
SCFD1-201ENST00000311943 TEX13AQ9BXU3 409 aaPredicted RBP15.73■□□□□ 0.11
SCFD1-201ENST00000311943 TM4SF1P30408 202 aa15.72■□□□□ 0.11
SCFD1-201ENST00000311943 LAMB4A4D0S4 1761 aa15.71■□□□□ 0.11
SCFD1-201ENST00000311943 POLRMTO00411 1230 aaKnown RBP15.71■□□□□ 0.11
SCFD1-201ENST00000311943 DUSP27Q5VZP5 1158 aa15.71■□□□□ 0.11
SCFD1-201ENST00000311943 NLGN1Q8N2Q7 840 aa15.71■□□□□ 0.11
SCFD1-201ENST00000311943 CARMIL3Q8ND23 1372 aa15.71■□□□□ 0.1
SCFD1-201ENST00000311943 FAM177BA6PVY3 158 aa15.7■□□□□ 0.1
SCFD1-201ENST00000311943 AIMP1Q12904 312 aaKnown RBP15.7■□□□□ 0.1
SCFD1-201ENST00000311943 ZBTB3Q9H5J0 574 aa15.7■□□□□ 0.1
SCFD1-201ENST00000311943 IFT57Q9NWB7 429 aa15.7■□□□□ 0.1
SCFD1-201ENST00000311943 CHPF2Q9P2E5 772 aa15.7■□□□□ 0.1
SCFD1-201ENST00000311943 PELP1Q8IZL8 1130 aaKnown RBP15.7■□□□□ 0.1
SCFD1-201ENST00000311943 A0A0G2JLW4 131 aa15.68■□□□□ 0.1
SCFD1-201ENST00000311943 CDCA7LQ96GN5 454 aa15.68■□□□□ 0.1
SCFD1-201ENST00000311943 CCER2I3L3R5 266 aa15.68■□□□□ 0.1
SCFD1-201ENST00000311943 GNAI1P63096 354 aa15.68■□□□□ 0.1
SCFD1-201ENST00000311943 CCDC27Q2M243 656 aa15.68■□□□□ 0.1
SCFD1-201ENST00000311943 YBX3P16989 372 aaKnown RBP eCLIP15.67■□□□□ 0.15e-7■■■□□ 14.6
SCFD1-201ENST00000311943 CHRNA5P30532 468 aa15.67■□□□□ 0.1
SCFD1-201ENST00000311943 HDGFL1Q5TGJ6 251 aa15.67■□□□□ 0.1
SCFD1-201ENST00000311943 PHAXQ9H814 394 aaKnown RBP15.67■□□□□ 0.1
SCFD1-201ENST00000311943 PARP3Q9Y6F1 533 aa15.67■□□□□ 0.1
SCFD1-201ENST00000311943 FANCIQ9NVI1 1328 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms