RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 UvssaQ9D479 717 aa18.33■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Dnmt1P13864 1620 aaKnown RBP18.33■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 PzpQ61838 1495 aa18.33■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Hoxc9P09633 260 aa18.33■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Ppp6r1Q7TSI3 856 aa18.33■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Pms1Q8K119 917 aa18.33■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Cfap65Q3V0B4 1847 aa18.33■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Kri1Q8VDQ9 704 aaKnown RBP18.32■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Trpm2Q91YD4 1506 aa18.32■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Ehmt1Q5DW34 1296 aa18.32■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Med4Q9CQA5 270 aa18.32■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Plch2A2AP18 1501 aa18.32■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Cep170Q6A065 1588 aa18.32■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Pdia4P08003 638 aaKnown RBP18.32■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Trim28Q62318 834 aa18.32■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 AidaQ8C4Q6 305 aa18.32■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Polr3dQ91WD1 398 aa18.32■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 LlphQ9D945 130 aaKnown RBP18.32■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Myd88P22366 296 aa18.31■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 GckrQ91X44 587 aa18.31■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Mcm3P25206 812 aaKnown RBP18.31■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Ddx19aQ61655 478 aaKnown RBP18.31■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Mns1Q61884 491 aa18.31■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Bicdl1A0JNT9 577 aa18.31■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Trim29Q8R2Q0 587 aa18.31■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Ttc41Q692V3 1318 aa18.31■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Pde4bB1AWC9 736 aa18.3■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Dnajc2P54103 621 aaKnown RBP18.3■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Mcmdc2E9Q956 681 aa18.3■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 TbcaP48428 108 aaKnown RBP18.3■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Pa2g4P50580 394 aaKnown RBP18.3■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Zrsr2Q62377 462 aaKnown RBP18.3■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Ankle2Q6P1H6 964 aa18.3■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Fsd2Q8BZ52 692 aa18.3■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Cwc15Q9JHS9 229 aaKnown RBP18.3■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Gnat3Q3V3I2 354 aa18.3■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Nlgn1Q99K10 843 aa18.3■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Ell2Q3UKU1 639 aa18.29■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Bloc1s4Q8VED2 215 aa18.29■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 4931400O07RikQ9D4M5 137 aa18.29■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 DmtnQ9WV69 405 aa18.29■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Znf692Q3U381 531 aa18.29■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Tmem87bQ8BKU8 555 aa18.29■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 RestQ8VIG1 1082 aa18.29■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Ncbp3Q8BZR9 615 aaKnown RBP18.29■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Slx4ipQ9D7Y9 413 aa18.29■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Fam184aE9PW83 1143 aa18.28■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Idi1P58044 227 aa18.28■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Jmjd4Q8BFT6 427 aa18.28■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Lmbr1lQ9D1E5 489 aa18.28■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Taf7Q9R1C0 341 aa18.28■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Fam43aQ8BUP8 424 aa18.28■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 NcapgE9PWG6 1004 aa18.28■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Tceanc2Q8R2M0 207 aa18.28■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 PtprtQ99M80 1454 aa18.27■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 VeztQ3ZK22 780 aa18.27■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 EappQ5BU09 281 aa18.27■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Stx6Q9JKK1 255 aa18.27■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Plxnc1Q9QZC2 1574 aa18.27■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Nos1Q9Z0J4 1429 aa18.27■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Mrps27Q8BK72 415 aaKnown RBP18.27■□□□□ 0.52
Ccdc88b-201ENSMUST00000113440 Ppfia1B2RXQ2 1266 aa18.27■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 ImmtQ8CAQ8 757 aaKnown RBP18.27■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Rcan3Q9JKK0 239 aa18.27■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Nckap5lQ6GQX2 1323 aa18.26■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Jarid2Q62315 1234 aa18.26■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Ccdc66Q6NS45 935 aa18.26■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Efcab2Q9CQ46 164 aa18.26■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Kdm5aQ3UXZ9 1690 aa18.26■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Ppfia3P60469 1194 aa18.26■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Smc2Q8CG48 1191 aaKnown RBP18.26■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Krt84Q99M73 603 aa18.26■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 F2rP30558 430 aa18.25■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Rufy2Q8R4C2 606 aa18.25■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Rnf17Q99MV7 1640 aa18.25■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Rbm27Q5SFM8 1060 aaKnown RBP18.25■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 ZwintQ9CQU5 252 aa18.25■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Gdpd2Q9ESM6 539 aa18.25■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Yeats2Q3TUF7 1407 aa18.25■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Cwc25Q9DBF7 416 aa18.25■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Myom2Q14BI5 1463 aa18.25■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Ier5O89113 308 aa18.25■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Riok1Q922Q2 567 aa18.25■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Uhrf1bp1lA2RSJ4 1457 aa18.25■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 GptQ8QZR5 496 aa18.24■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Zmym3Q9JLM4 1370 aa18.24■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Gcom1E9PZ54 550 aa18.24■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 MyzapQ3UIJ9 466 aa18.24■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Klc3Q91W40 508 aa18.24■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Pmfbp1Q9WVQ0 1022 aa18.24■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Golim4Q8BXA1 655 aa18.24■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Depdc5P61460 1591 aa18.24■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Grm8P47743 908 aa18.23■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Atg4a-psA0A0G2JFS9 396 aa18.23■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Tmem67Q8BR76 992 aa18.23■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Atg4aQ8C9S8 396 aa18.23■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Gimap5Q8BWF2 308 aa18.23■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Ppp6r3Q922D4 844 aa18.23■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Cdc45Q9Z1X9 566 aa18.23■□□□□ 0.51
Ccdc88b-201ENSMUST00000113440 Mmp8O70138 465 aa18.22■□□□□ 0.51
Retrieved 100 of 22,080 RNA–protein pairs in 22.1 ms