RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.67□□□□□ -1.02
VPS13D-212ENST00000543766 TDRD5Q8NAT2 981 aaKnown RBP8.67□□□□□ -1.02
VPS13D-212ENST00000543766 ZNF461Q8TAF7 563 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 FAM172AQ8WUF8 416 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 LRRN4Q8WUT4 740 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 RNF31Q96EP0 1072 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 SNX18Q96RF0 628 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 DUSP26Q9BV47 211 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 PLA2G12BQ9BX93 195 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 KAT8Q9H7Z6 458 aaKnown RBP8.67□□□□□ -1.02
VPS13D-212ENST00000543766 GULP1Q9UBP9 304 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 AP4B1Q9Y6B7 739 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 SLC22A31A6NKX4 558 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 RFPL2O75678 378 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 FGGP02679 453 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 PLA2G4BP0C869 781 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 ANXA7P20073 488 aaKnown RBP8.67□□□□□ -1.02
VPS13D-212ENST00000543766 TYK2P29597 1187 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 TWF1Q12792 350 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 FADDQ13158 208 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 RBMS2Q15434 407 aaKnown RBP8.67□□□□□ -1.02
VPS13D-212ENST00000543766 TBCEQ15813 527 aaPredicted RBP8.67□□□□□ -1.02
VPS13D-212ENST00000543766 FAM98BQ52LJ0 330 aaKnown RBP8.67□□□□□ -1.02
VPS13D-212ENST00000543766 CDC73Q6P1J9 531 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 RASAL3Q86YV0 1011 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 CLEC10AQ8IUN9 316 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 SDR42E1Q8WUS8 393 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 EEF2KMTQ96G04 330 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 LMF1Q96S06 567 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 BDH2Q9BUT1 245 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 PTDSS2Q9BVG9 487 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 RNF26Q9BY78 433 aaPredicted RBP8.67□□□□□ -1.02
VPS13D-212ENST00000543766 CATSPERBQ9H7T0 1116 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 CENPMQ9NSP4 180 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 TMEM140Q9NV12 185 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 FAM86C1Q9NVL1 165 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 NLGN3Q9NZ94 848 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 ANKFY1Q9P2R3 1169 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 USP17L5A8MUK1 530 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 G3V2T6 193 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 POLRMTO00411 1230 aaKnown RBP8.67□□□□□ -1.02
VPS13D-212ENST00000543766 ACKR2O00590 384 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 HCRTR2O43614 444 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 TNFRSF6BO95407 300 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 HRGP04196 525 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 XKP51811 444 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 NCKAP1LP55160 1127 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 HTRA3P83110 453 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 SREBF2Q12772 1141 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 MAPK7Q13164 816 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 NFIXQ14938 502 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 PAN2Q504Q3 1202 aaKnown RBP8.67□□□□□ -1.02
VPS13D-212ENST00000543766 ZMAT1Q5H9K5 638 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 LIPJQ5W064 366 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 LRRC55Q6ZSA7 311 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 TECPR1Q7Z6L1 1165 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 LGI2Q8N0V4 545 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 SYNPOQ8N3V7 929 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 NEU1Q99519 415 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 CCDC3Q9BQI4 270 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 BHLHE41Q9C0J9 482 aaPredicted RBP8.67□□□□□ -1.02
VPS13D-212ENST00000543766 ZNF430Q9H8G1 570 aaPredicted RBP8.67□□□□□ -1.02
VPS13D-212ENST00000543766 GPAMQ9HCL2 828 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 FBXO28Q9NVF7 368 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 P4HTMQ9NXG6 502 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 MTCH1Q9NZJ7 389 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 PCYOX1Q9UHG3 505 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 ACSL5Q9ULC5 683 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 CORINQ9Y5Q5 1042 aa8.67□□□□□ -1.02
VPS13D-212ENST00000543766 PDGFBP01127 241 aaPredicted RBP8.66□□□□□ -1.02
VPS13D-212ENST00000543766 RLN2P04090 185 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 YES1P07947 543 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 HNRNPA1P09651 372 aaKnown RBP eCLIP8.66□□□□□ -1.02
VPS13D-212ENST00000543766 BRAFP15056 766 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 PPP3CBP16298 524 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 DTYMKP23919 212 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 YWHABP31946 246 aaKnown RBP8.66□□□□□ -1.02
VPS13D-212ENST00000543766 RPL21P46778 160 aaKnown RBP8.66□□□□□ -1.02
VPS13D-212ENST00000543766 CRYBB1P53674 252 aaPredicted RBP8.66□□□□□ -1.02
VPS13D-212ENST00000543766 NPRL3Q12980 569 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 NME3Q13232 169 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 APOFQ13790 326 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 KCNAB1Q14722 419 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 RPS6KA2Q15349 733 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 RHBDF2Q6PJF5 856 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 ZC3H14Q6PJT7 736 aaKnown RBP8.66□□□□□ -1.02
VPS13D-212ENST00000543766 TPGS1Q6ZTW0 290 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 ZNF516Q92618 1163 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 CNPPD1Q9BV87 410 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 HMG20AQ9NP66 347 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 DECR2Q9NUI1 292 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 EBF1Q9UH73 591 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 ZDHHC2Q9UIJ5 367 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 GRIP1Q9Y3R0 1128 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 NUP98P52948 1817 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 FRMPD4Q14CM0 1322 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 NEMP1O14524 444 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 FBXO24O75426 580 aa8.66□□□□□ -1.02
VPS13D-212ENST00000543766 EIF3GO75821 320 aaKnown RBP eCLIP8.66□□□□□ -1.02
VPS13D-212ENST00000543766 LDLRP01130 860 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms