RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 DEPDC4Q8N2C3 294 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 NUDT12Q9BQG2 462 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 METTL14Q9HCE5 456 aaKnown RBP7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 IFT140Q96RY7 1462 aa7.15□□□□□ -1.27
VPS35P1-201ENST00000563400 PRR20EP86478 221 aa7.14□□□□□ -1.27
VPS35P1-201ENST00000563400 PRR20CP86479 221 aa7.14□□□□□ -1.27
VPS35P1-201ENST00000563400 PRR20DP86480 221 aa7.14□□□□□ -1.27
VPS35P1-201ENST00000563400 PRR20BP86481 221 aa7.14□□□□□ -1.27
VPS35P1-201ENST00000563400 PRR20AP86496 221 aa7.14□□□□□ -1.27
VPS35P1-201ENST00000563400 PSME1Q06323 249 aa7.14□□□□□ -1.27
VPS35P1-201ENST00000563400 PTPRNQ16849 979 aa7.14□□□□□ -1.27
VPS35P1-201ENST00000563400 METTL16Q86W50 562 aaKnown RBP7.14□□□□□ -1.27
VPS35P1-201ENST00000563400 PMFBP1Q8TBY8 1022 aa7.14□□□□□ -1.27
VPS35P1-201ENST00000563400 EMID1Q96A84 441 aaPredicted RBP7.14□□□□□ -1.27
VPS35P1-201ENST00000563400 ASB16Q96NS5 453 aa7.14□□□□□ -1.27
VPS35P1-201ENST00000563400 FAM196BA6NMK8 535 aa7.13□□□□□ -1.27
VPS35P1-201ENST00000563400 H3BRB1 525 aa7.13□□□□□ -1.27
VPS35P1-201ENST00000563400 CCNYL3P0C7X3 344 aa7.13□□□□□ -1.27
VPS35P1-201ENST00000563400 ATP2B1P20020 1258 aa7.13□□□□□ -1.27
VPS35P1-201ENST00000563400 KCNB2Q92953 911 aa7.13□□□□□ -1.27
VPS35P1-201ENST00000563400 TUT1Q9H6E5 874 aaKnown RBP7.13□□□□□ -1.27
VPS35P1-201ENST00000563400 WDR62O43379 1518 aa7.13□□□□□ -1.27
VPS35P1-201ENST00000563400 SOGA1O94964 1423 aa7.13□□□□□ -1.27
VPS35P1-201ENST00000563400 TRIM32Q13049 653 aa7.12□□□□□ -1.27
VPS35P1-201ENST00000563400 PTK7Q13308 1070 aa7.12□□□□□ -1.27
VPS35P1-201ENST00000563400 FAM200AQ8TCP9 573 aa7.12□□□□□ -1.27
VPS35P1-201ENST00000563400 CAPN10Q9HC96 672 aa7.12□□□□□ -1.27
VPS35P1-201ENST00000563400 DNMBPQ6XZF7 1577 aa7.12□□□□□ -1.27
VPS35P1-201ENST00000563400 FOXC1Q12948 553 aa7.11□□□□□ -1.27
VPS35P1-201ENST00000563400 EAPPQ56P03 285 aaPredicted RBP7.11□□□□□ -1.27
VPS35P1-201ENST00000563400 HELBQ8NG08 1087 aaPredicted RBP7.11□□□□□ -1.27
VPS35P1-201ENST00000563400 TSC1Q92574 1164 aa7.11□□□□□ -1.27
VPS35P1-201ENST00000563400 ZSWIM4Q9H7M6 989 aa7.11□□□□□ -1.27
VPS35P1-201ENST00000563400 SKIP12755 728 aa7.11□□□□□ -1.27
VPS35P1-201ENST00000563400 TNNI2P48788 182 aa7.11□□□□□ -1.27
VPS35P1-201ENST00000563400 PKDCCQ504Y2 493 aa7.11□□□□□ -1.27
VPS35P1-201ENST00000563400 MKRN1Q9UHC7 482 aaKnown RBP7.11□□□□□ -1.27
VPS35P1-201ENST00000563400 TOPBP1Q92547 1522 aa7.1□□□□□ -1.27
VPS35P1-201ENST00000563400 A0A0U1RQG5 324 aaPredicted RBP7.1□□□□□ -1.27
VPS35P1-201ENST00000563400 USP17L5A8MUK1 530 aa7.1□□□□□ -1.27
VPS35P1-201ENST00000563400 TNFRSF10AO00220 468 aa7.1□□□□□ -1.27
VPS35P1-201ENST00000563400 LZTS3O60299 673 aaPredicted RBP7.1□□□□□ -1.27
VPS35P1-201ENST00000563400 WNT7BP56706 349 aa7.1□□□□□ -1.27
VPS35P1-201ENST00000563400 ECM1Q16610 540 aa7.1□□□□□ -1.27
VPS35P1-201ENST00000563400 CCDC181Q5TID7 509 aa7.1□□□□□ -1.27
VPS35P1-201ENST00000563400 SLC43A3Q8NBI5 491 aa7.1□□□□□ -1.27
VPS35P1-201ENST00000563400 CHMP7Q8WUX9 453 aaPredicted RBP7.1□□□□□ -1.27
VPS35P1-201ENST00000563400 FAM161BQ96MY7 647 aa7.1□□□□□ -1.27
VPS35P1-201ENST00000563400 ACBD3Q9H3P7 528 aa7.1□□□□□ -1.27
VPS35P1-201ENST00000563400 EVA1BQ9NVM1 165 aa7.1□□□□□ -1.27
VPS35P1-201ENST00000563400 WDR97A6NE52 1622 aa7.09□□□□□ -1.27
VPS35P1-201ENST00000563400 GDF9O60383 454 aa7.09□□□□□ -1.27
VPS35P1-201ENST00000563400 ICMTO60725 284 aa7.09□□□□□ -1.27
VPS35P1-201ENST00000563400 RASA1P20936 1047 aa7.09□□□□□ -1.27
VPS35P1-201ENST00000563400 EIF4G2P78344 907 aaKnown RBP eCLIP7.09□□□□□ -1.27
VPS35P1-201ENST00000563400 NR6A1Q15406 480 aa7.09□□□□□ -1.27
VPS35P1-201ENST00000563400 LYPD8Q6UX82 237 aa7.09□□□□□ -1.27
VPS35P1-201ENST00000563400 JAZF1Q86VZ6 243 aa7.09□□□□□ -1.27
VPS35P1-201ENST00000563400 GLYCTKQ8IVS8 523 aa7.09□□□□□ -1.27
VPS35P1-201ENST00000563400 TEX2Q8IWB9 1127 aa7.09□□□□□ -1.27
VPS35P1-201ENST00000563400 CYP4X1Q8N118 509 aa7.09□□□□□ -1.27
VPS35P1-201ENST00000563400 TMEM87AQ8NBN3 555 aa7.09□□□□□ -1.27
VPS35P1-201ENST00000563400 DCTN4Q9UJW0 460 aa7.09□□□□□ -1.27
VPS35P1-201ENST00000563400 KIF21AQ7Z4S6 1674 aa7.09□□□□□ -1.27
VPS35P1-201ENST00000563400 CFAP99D6REC4 459 aa7.08□□□□□ -1.28
VPS35P1-201ENST00000563400 WNT7AO00755 349 aa7.08□□□□□ -1.28
VPS35P1-201ENST00000563400 DGAT1O75907 488 aa7.08□□□□□ -1.28
VPS35P1-201ENST00000563400 CTHP32929 405 aa7.08□□□□□ -1.28
VPS35P1-201ENST00000563400 KCNH2Q12809 1159 aa7.08□□□□□ -1.28
VPS35P1-201ENST00000563400 TRIM67Q6ZTA4 783 aa7.08□□□□□ -1.28
VPS35P1-201ENST00000563400 FAM174AQ8TBP5 190 aa7.08□□□□□ -1.28
VPS35P1-201ENST00000563400 CHPF2Q9P2E5 772 aa7.08□□□□□ -1.28
VPS35P1-201ENST00000563400 DMGDHQ9UI17 866 aaKnown RBP7.08□□□□□ -1.28
VPS35P1-201ENST00000563400 KIF27Q86VH2 1401 aa7.08□□□□□ -1.28
VPS35P1-201ENST00000563400 P4HBP07237 508 aaKnown RBP7.07□□□□□ -1.28
VPS35P1-201ENST00000563400 DNAJA1P31689 397 aaKnown RBP7.07□□□□□ -1.28
VPS35P1-201ENST00000563400 ANAPC15P60006 121 aa7.07□□□□□ -1.28
VPS35P1-201ENST00000563400 LARP1Q6PKG0 1096 aaKnown RBP7.07□□□□□ -1.28
VPS35P1-201ENST00000563400 TRAF7Q6Q0C0 670 aa7.07□□□□□ -1.28
VPS35P1-201ENST00000563400 ANKMY2Q8IV38 441 aa7.07□□□□□ -1.28
VPS35P1-201ENST00000563400 PLEKHM2Q8IWE5 1019 aa7.07□□□□□ -1.28
VPS35P1-201ENST00000563400 ZSCAN29Q8IWY8 852 aaPredicted RBP7.07□□□□□ -1.28
VPS35P1-201ENST00000563400 MORC4Q8TE76 937 aa7.07□□□□□ -1.28
VPS35P1-201ENST00000563400 BCL11AQ9H165 835 aa7.07□□□□□ -1.28
VPS35P1-201ENST00000563400 EGFL7Q9UHF1 273 aa7.07□□□□□ -1.28
VPS35P1-201ENST00000563400 FAN1Q9Y2M0 1017 aa7.07□□□□□ -1.28
VPS35P1-201ENST00000563400 NOP58Q9Y2X3 529 aaKnown RBP7.07□□□□□ -1.28
VPS35P1-201ENST00000563400 TTC24A2A3L6 582 aaPredicted RBP7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 PRMT3O60678 531 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 CENPBP07199 599 aaPredicted RBP7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 IBSPP21815 317 aaPredicted RBP7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 SLFNL1Q499Z3 407 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 C1orf216Q8TAB5 229 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 TGIF2Q9GZN2 237 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 UNC93B1Q9H1C4 597 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 CCSER2Q9H7U1 834 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 RNF19AQ9NV58 838 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 PKD2L1Q9P0L9 805 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 EEA1Q15075 1411 aa7.06□□□□□ -1.28
VPS35P1-201ENST00000563400 URB2Q14146 1524 aaKnown RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms