RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 AEBP2Q6ZN18 517 aaPredicted RBP18.44■□□□□ 0.54
VPS35P1-201ENST00000563400 CHIC1Q5VXU3 224 aa17.93■□□□□ 0.46
VPS35P1-201ENST00000563400 SENP3Q9H4L4 574 aaPredicted RBP15.84■□□□□ 0.13
VPS35P1-201ENST00000563400 PHF23Q9BUL5 403 aaPredicted RBP15.67■□□□□ 0.1
VPS35P1-201ENST00000563400 FOXD1Q16676 465 aa14.62□□□□□ -0.07
VPS35P1-201ENST00000563400 PLPPR3Q6T4P5 718 aa14.56□□□□□ -0.08
VPS35P1-201ENST00000563400 ADRA2BP18089 450 aa13.9□□□□□ -0.19
VPS35P1-201ENST00000563400 PPP6R1Q9UPN7 881 aa13.88□□□□□ -0.19
VPS35P1-201ENST00000563400 PIAS4Q8N2W9 510 aaPredicted RBP13.81□□□□□ -0.2
VPS35P1-201ENST00000563400 MSH5O43196 834 aa13.69□□□□□ -0.22
VPS35P1-201ENST00000563400 SCAF1Q9H7N4 1312 aaKnown RBP12.9□□□□□ -0.34
VPS35P1-201ENST00000563400 PPP4R3CPQ6ZMV5 832 aa12.76□□□□□ -0.37
VPS35P1-201ENST00000563400 POTEDQ86YR6 584 aa12.66□□□□□ -0.38
VPS35P1-201ENST00000563400 MAPK8IP2Q13387 824 aaPredicted RBP12.63□□□□□ -0.39
VPS35P1-201ENST00000563400 DMRT2Q9Y5R5 561 aa12.57□□□□□ -0.4
VPS35P1-201ENST00000563400 NCBP3Q53F19 620 aaKnown RBP12.48□□□□□ -0.41
VPS35P1-201ENST00000563400 CNKSR2Q8WXI2 1034 aa12.47□□□□□ -0.41
VPS35P1-201ENST00000563400 RNF216Q9NWF9 866 aaPredicted RBP12.27□□□□□ -0.44
VPS35P1-201ENST00000563400 HOXD11P31277 338 aaPredicted RBP12.23□□□□□ -0.45
VPS35P1-201ENST00000563400 KCNA4P22459 653 aa12.21□□□□□ -0.46
VPS35P1-201ENST00000563400 NPM3O75607 178 aaKnown RBP12.16□□□□□ -0.46
VPS35P1-201ENST00000563400 DCAF8L1A6NGE4 600 aa12.1□□□□□ -0.47
VPS35P1-201ENST00000563400 EHMT2Q96KQ7 1210 aa11.93□□□□□ -0.5
VPS35P1-201ENST00000563400 DNAJC5BQ9UF47 199 aa11.86□□□□□ -0.51
VPS35P1-201ENST00000563400 SLC24A1O60721 1099 aa11.79□□□□□ -0.52
VPS35P1-201ENST00000563400 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.73□□□□□ -0.53
VPS35P1-201ENST00000563400 SLC4A1APQ9BWU0 796 aaKnown RBP11.66□□□□□ -0.54
VPS35P1-201ENST00000563400 RNF39Q9H2S5 420 aa11.62□□□□□ -0.55
VPS35P1-201ENST00000563400 C1QBPQ07021 282 aaKnown RBP11.55□□□□□ -0.56
VPS35P1-201ENST00000563400 CACNB1Q02641 598 aaPredicted RBP11.51□□□□□ -0.57
VPS35P1-201ENST00000563400 SLC4A2P04920 1241 aa11.48□□□□□ -0.57
VPS35P1-201ENST00000563400 U3KPZ7 1027 aaPredicted RBP11.42□□□□□ -0.58
VPS35P1-201ENST00000563400 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.39□□□□□ -0.59
VPS35P1-201ENST00000563400 HNRNPUL2Q1KMD3 747 aaKnown RBP11.39□□□□□ -0.59
VPS35P1-201ENST00000563400 FOXD4L1Q9NU39 408 aa11.36□□□□□ -0.59
VPS35P1-201ENST00000563400 APLP2Q06481 763 aa11.35□□□□□ -0.59
VPS35P1-201ENST00000563400 MYCNP04198 464 aaPredicted RBP11.31□□□□□ -0.6
VPS35P1-201ENST00000563400 SAMD1Q6SPF0 538 aaPredicted RBP11.3□□□□□ -0.6
VPS35P1-201ENST00000563400 CSRNP3Q8WYN3 585 aa11.27□□□□□ -0.61
VPS35P1-201ENST00000563400 CAPN15O75808 1086 aa11.2□□□□□ -0.62
VPS35P1-201ENST00000563400 ZBTB22O15209 634 aa11.16□□□□□ -0.62
VPS35P1-201ENST00000563400 SPINK5Q9NQ38 1064 aaPredicted RBP11.14□□□□□ -0.63
VPS35P1-201ENST00000563400 ZNF219Q9P2Y4 722 aaPredicted RBP11.14□□□□□ -0.63
VPS35P1-201ENST00000563400 RTN4Q9NQC3 1192 aaKnown RBP11.12□□□□□ -0.63
VPS35P1-201ENST00000563400 TRHP20396 242 aaPredicted RBP11.09□□□□□ -0.63
VPS35P1-201ENST00000563400 ATXN8OSP0DMR3 200 aa11.02□□□□□ -0.65
VPS35P1-201ENST00000563400 DSG3P32926 999 aa10.99□□□□□ -0.65
VPS35P1-201ENST00000563400 AMER1Q5JTC6 1135 aaPredicted RBP10.93□□□□□ -0.66
VPS35P1-201ENST00000563400 ABCB7O75027 752 aa10.91□□□□□ -0.66
VPS35P1-201ENST00000563400 ATF5Q9Y2D1 282 aaPredicted RBP10.89□□□□□ -0.67
VPS35P1-201ENST00000563400 POLA2Q14181 598 aa10.86□□□□□ -0.67
VPS35P1-201ENST00000563400 ZBTB12Q9Y330 459 aaPredicted RBP10.77□□□□□ -0.69
VPS35P1-201ENST00000563400 FBLN2P98095 1184 aa10.63□□□□□ -0.71
VPS35P1-201ENST00000563400 RBM42Q9BTD8 480 aaKnown RBP10.6□□□□□ -0.71
VPS35P1-201ENST00000563400 OSCARQ8IYS5 282 aa10.47□□□□□ -0.73
VPS35P1-201ENST00000563400 MKRN4PQ13434 485 aaPredicted RBP10.42□□□□□ -0.74
VPS35P1-201ENST00000563400 SPDYE2BA6NHP3 402 aa10.4□□□□□ -0.74
VPS35P1-201ENST00000563400 SPDYE6P0CI01 402 aa10.4□□□□□ -0.74
VPS35P1-201ENST00000563400 SPDYE2Q495Y8 402 aa10.4□□□□□ -0.74
VPS35P1-201ENST00000563400 PRKCSHP14314 528 aaPredicted RBP10.38□□□□□ -0.75
VPS35P1-201ENST00000563400 AKT1S1Q96B36 256 aa10.38□□□□□ -0.75
VPS35P1-201ENST00000563400 ZNF692Q9BU19 519 aaPredicted RBP10.33□□□□□ -0.76
VPS35P1-201ENST00000563400 REM2Q8IYK8 340 aaPredicted RBP10.24□□□□□ -0.77
VPS35P1-201ENST00000563400 SSUH2Q9Y2M2 353 aa10.24□□□□□ -0.77
VPS35P1-201ENST00000563400 SPDYE4A6NLX3 237 aa10.21□□□□□ -0.78
VPS35P1-201ENST00000563400 DAXXQ9UER7 740 aaPredicted RBP10.19□□□□□ -0.78
VPS35P1-201ENST00000563400 PABPN1Q86U42 306 aaKnown RBP eCLIP10.17□□□□□ -0.78
VPS35P1-201ENST00000563400 CHRDL2Q6WN34 429 aa10.16□□□□□ -0.78
VPS35P1-201ENST00000563400 SPDYE1Q8NFV5 336 aaPredicted RBP10.16□□□□□ -0.78
VPS35P1-201ENST00000563400 TAOK2Q9UL54 1235 aa10.13□□□□□ -0.79
VPS35P1-201ENST00000563400 PITPNM1O00562 1244 aa10.1□□□□□ -0.79
VPS35P1-201ENST00000563400 FKBP8Q14318 412 aa10.1□□□□□ -0.79
VPS35P1-201ENST00000563400 CLEC11AQ9Y240 323 aa10.1□□□□□ -0.79
VPS35P1-201ENST00000563400 PLCB2Q00722 1185 aa10.08□□□□□ -0.8
VPS35P1-201ENST00000563400 BCANQ96GW7 911 aa10.07□□□□□ -0.8
VPS35P1-201ENST00000563400 STAG3Q9UJ98 1225 aa10.05□□□□□ -0.8
VPS35P1-201ENST00000563400 POTEHQ6S545 545 aa10.03□□□□□ -0.8
VPS35P1-201ENST00000563400 PRR29P0C7W0 189 aa10□□□□□ -0.81
VPS35P1-201ENST00000563400 HAP1P54257 671 aaPredicted RBP9.98□□□□□ -0.81
VPS35P1-201ENST00000563400 TPRNQ4KMQ1 711 aa9.97□□□□□ -0.81
VPS35P1-201ENST00000563400 TIMELESSQ9UNS1 1208 aa9.97□□□□□ -0.81
VPS35P1-201ENST00000563400 FXR2P51116 673 aaKnown RBP eCLIP9.96□□□□□ -0.82
VPS35P1-201ENST00000563400 PIP4P2Q8N4L2 257 aa9.95□□□□□ -0.82
VPS35P1-201ENST00000563400 PROM2Q8N271 834 aa9.94□□□□□ -0.82
VPS35P1-201ENST00000563400 ARXQ96QS3 562 aa9.89□□□□□ -0.83
VPS35P1-201ENST00000563400 PRKAR2AP13861 404 aaKnown RBP9.88□□□□□ -0.83
VPS35P1-201ENST00000563400 TULP1O00294 542 aaPredicted RBP9.87□□□□□ -0.83
VPS35P1-201ENST00000563400 FBXO3Q9UK99 471 aa9.83□□□□□ -0.84
VPS35P1-201ENST00000563400 PLEKHG5O94827 1062 aa9.82□□□□□ -0.84
VPS35P1-201ENST00000563400 NISCHQ9Y2I1 1504 aa9.81□□□□□ -0.84
VPS35P1-201ENST00000563400 CHADLQ6NUI6 762 aa9.79□□□□□ -0.84
VPS35P1-201ENST00000563400 VSIG10Q8N0Z9 540 aa9.77□□□□□ -0.85
VPS35P1-201ENST00000563400 HAX1O00165 279 aa9.75□□□□□ -0.85
VPS35P1-201ENST00000563400 MIER1Q8N108 512 aa9.74□□□□□ -0.85
VPS35P1-201ENST00000563400 CREBZFQ9NS37 354 aa9.74□□□□□ -0.85
VPS35P1-201ENST00000563400 FARP1Q9Y4F1 1045 aaPredicted RBP9.73□□□□□ -0.85
VPS35P1-201ENST00000563400 PLCD3Q8N3E9 789 aa9.72□□□□□ -0.85
VPS35P1-201ENST00000563400 NPM1P06748 294 aaKnown RBP eCLIP9.71□□□□□ -0.86
VPS35P1-201ENST00000563400 ZBTB47Q9UFB7 747 aaPredicted RBP9.68□□□□□ -0.86
VPS35P1-201ENST00000563400 KDM2AQ9Y2K7 1162 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms