RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 STAU1O95793 577 aaKnown RBP7.16□□□□□ -1.26
VPS13A-207ENST00000419472 RBL2Q08999 1139 aa7.16□□□□□ -1.26
VPS13A-207ENST00000419472 PTPROQ16827 1216 aa7.16□□□□□ -1.26
VPS13A-207ENST00000419472 SLC52A1Q9NWF4 448 aa7.16□□□□□ -1.26
VPS13A-207ENST00000419472 FZD6O60353 706 aa7.15□□□□□ -1.26
VPS13A-207ENST00000419472 DOK7Q18PE1 504 aa7.15□□□□□ -1.26
VPS13A-207ENST00000419472 INPP5FQ9Y2H2 1132 aa7.15□□□□□ -1.26
VPS13A-207ENST00000419472 PLCB3Q01970 1234 aa7.15□□□□□ -1.26
VPS13A-207ENST00000419472 BRICD5Q6PL45 260 aa7.15□□□□□ -1.26
VPS13A-207ENST00000419472 ZBTB33Q86T24 672 aa7.15□□□□□ -1.26
VPS13A-207ENST00000419472 hCG_2014768A0A024R1R8 64 aa7.14□□□□□ -1.27
VPS13A-207ENST00000419472 MAGEB6P1A0A0J9YX57 407 aa7.14□□□□□ -1.27
VPS13A-207ENST00000419472 CTSHP09668 335 aa7.14□□□□□ -1.27
VPS13A-207ENST00000419472 EIF1AXP47813 144 aaKnown RBP7.14□□□□□ -1.27
VPS13A-207ENST00000419472 CLCN6P51797 869 aa7.14□□□□□ -1.27
VPS13A-207ENST00000419472 AAMPQ13685 434 aa7.14□□□□□ -1.27
VPS13A-207ENST00000419472 JUNDP17535 347 aa7.14□□□□□ -1.27
VPS13A-207ENST00000419472 DZIP3Q86Y13 1208 aaKnown RBP7.14□□□□□ -1.27
VPS13A-207ENST00000419472 MCF2L2Q86YR7 1114 aa7.14□□□□□ -1.27
VPS13A-207ENST00000419472 RABGEF1Q9UJ41 708 aa7.14□□□□□ -1.27
VPS13A-207ENST00000419472 SUGT1Q9Y2Z0 365 aa7.14□□□□□ -1.27
VPS13A-207ENST00000419472 ARID5AQ03989 594 aa7.14□□□□□ -1.27
VPS13A-207ENST00000419472 GNL2Q13823 731 aaKnown RBP7.14□□□□□ -1.27
VPS13A-207ENST00000419472 ZNF746Q6NUN9 644 aaPredicted RBP7.14□□□□□ -1.27
VPS13A-207ENST00000419472 PPARGC1BQ86YN6 1023 aaKnown RBP7.14□□□□□ -1.27
VPS13A-207ENST00000419472 DCBLD2Q96PD2 775 aa7.14□□□□□ -1.27
VPS13A-207ENST00000419472 OSBPL2Q9H1P3 480 aa7.14□□□□□ -1.27
VPS13A-207ENST00000419472 WIZO95785 1651 aa7.13□□□□□ -1.27
VPS13A-207ENST00000419472 TOP2AP11388 1531 aaKnown RBP7.13□□□□□ -1.27
VPS13A-207ENST00000419472 SLC4A3P48751 1232 aa7.13□□□□□ -1.27
VPS13A-207ENST00000419472 FAM98CQ17RN3 349 aaKnown RBP7.13□□□□□ -1.27
VPS13A-207ENST00000419472 ATCAYQ86WG3 371 aa7.13□□□□□ -1.27
VPS13A-207ENST00000419472 KCNB2Q92953 911 aa7.13□□□□□ -1.27
VPS13A-207ENST00000419472 ARMC5Q96C12 935 aa7.13□□□□□ -1.27
VPS13A-207ENST00000419472 PARNO95453 639 aaKnown RBP7.13□□□□□ -1.27
VPS13A-207ENST00000419472 CCNYL3P0C7X3 344 aa7.13□□□□□ -1.27
VPS13A-207ENST00000419472 KMT5BQ4FZB7 885 aa7.13□□□□□ -1.27
VPS13A-207ENST00000419472 FAM26DQ5JW98 314 aa7.13□□□□□ -1.27
VPS13A-207ENST00000419472 TMED8Q6PL24 325 aaPredicted RBP7.13□□□□□ -1.27
VPS13A-207ENST00000419472 EVA1BQ9NVM1 165 aa7.13□□□□□ -1.27
VPS13A-207ENST00000419472 ACTN4O43707 911 aaKnown RBP7.12□□□□□ -1.27
VPS13A-207ENST00000419472 MCCD1P59942 119 aaPredicted RBP7.12□□□□□ -1.27
VPS13A-207ENST00000419472 IGBP1P78318 339 aa7.12□□□□□ -1.27
VPS13A-207ENST00000419472 CHMP7Q8WUX9 453 aaPredicted RBP7.12□□□□□ -1.27
VPS13A-207ENST00000419472 SCG3Q8WXD2 468 aaKnown RBP7.12□□□□□ -1.27
VPS13A-207ENST00000419472 THAP11Q96EK4 314 aa7.12□□□□□ -1.27
VPS13A-207ENST00000419472 NIF3L1Q9GZT8 377 aa7.12□□□□□ -1.27
VPS13A-207ENST00000419472 CUX2O14529 1486 aa7.12□□□□□ -1.27
VPS13A-207ENST00000419472 PNMA6FA0A0J9YX94 578 aa7.12□□□□□ -1.27
VPS13A-207ENST00000419472 PSDA5PKW4 1024 aaPredicted RBP7.12□□□□□ -1.27
VPS13A-207ENST00000419472 PRDM9Q9NQV7 894 aa7.12□□□□□ -1.27
VPS13A-207ENST00000419472 DDX41Q9UJV9 622 aaKnown RBP7.12□□□□□ -1.27
VPS13A-207ENST00000419472 RIMBP2O15034 1052 aa7.11□□□□□ -1.27
VPS13A-207ENST00000419472 ZBTB39O15060 712 aa7.11□□□□□ -1.27
VPS13A-207ENST00000419472 NBPF14Q5TI25 921 aa7.11□□□□□ -1.27
VPS13A-207ENST00000419472 SH3BP5LQ7L8J4 393 aa7.11□□□□□ -1.27
VPS13A-207ENST00000419472 SCUBE3Q8IX30 993 aa7.11□□□□□ -1.27
VPS13A-207ENST00000419472 FAM129BQ96TA1 746 aa7.11□□□□□ -1.27
VPS13A-207ENST00000419472 NUDT12Q9BQG2 462 aa7.11□□□□□ -1.27
VPS13A-207ENST00000419472 RSF1Q96T23 1441 aaPredicted RBP7.11□□□□□ -1.27
VPS13A-207ENST00000419472 CFHR5Q9BXR6 569 aa7.11□□□□□ -1.27
VPS13A-207ENST00000419472 ZSWIM6Q9HCJ5 1215 aa7.11□□□□□ -1.27
VPS13A-207ENST00000419472 ZNF358Q9NW07 568 aa7.11□□□□□ -1.27
VPS13A-207ENST00000419472 PCDHB11Q9Y5F2 797 aa7.11□□□□□ -1.27
VPS13A-207ENST00000419472 ESPNB1AK53 854 aa7.1□□□□□ -1.27
VPS13A-207ENST00000419472 TNS4Q8IZW8 715 aa7.1□□□□□ -1.27
VPS13A-207ENST00000419472 CYLDQ9NQC7 956 aa7.1□□□□□ -1.27
VPS13A-207ENST00000419472 LOC102724159A0A0B4J2E5 919 aa7.1□□□□□ -1.27
VPS13A-207ENST00000419472 FGRP09769 529 aa7.1□□□□□ -1.27
VPS13A-207ENST00000419472 PWP2Q15269 919 aaKnown RBP7.1□□□□□ -1.27
VPS13A-207ENST00000419472 COL26A1Q96A83 441 aa7.1□□□□□ -1.27
VPS13A-207ENST00000419472 RIPOR2Q9Y4F9 1068 aa7.1□□□□□ -1.27
VPS13A-207ENST00000419472 PRDM2Q13029 1718 aa7.09□□□□□ -1.27
VPS13A-207ENST00000419472 GABBR2O75899 941 aa7.09□□□□□ -1.27
VPS13A-207ENST00000419472 SCTRP47872 440 aa7.09□□□□□ -1.27
VPS13A-207ENST00000419472 USP48Q86UV5 1035 aa7.09□□□□□ -1.27
VPS13A-207ENST00000419472 DMRTB1Q96MA1 342 aa7.09□□□□□ -1.27
VPS13A-207ENST00000419472 POTEHQ6S545 545 aa7.09□□□□□ -1.27
VPS13A-207ENST00000419472 GPKOWQ92917 476 aaPredicted RBP eCLIP7.09□□□□□ -1.27
VPS13A-207ENST00000419472 TSPAN10Q9H1Z9 355 aaPredicted RBP7.09□□□□□ -1.27
VPS13A-207ENST00000419472 SRA1Q9HD15 236 aaKnown RBP7.09□□□□□ -1.27
VPS13A-207ENST00000419472 TMEM229AB2RXF0 380 aa7.08□□□□□ -1.28
VPS13A-207ENST00000419472 RAB15P59190 212 aa7.08□□□□□ -1.28
VPS13A-207ENST00000419472 ATP2B2Q01814 1243 aa7.08□□□□□ -1.28
VPS13A-207ENST00000419472 USP4Q13107 963 aa7.08□□□□□ -1.28
VPS13A-207ENST00000419472 C16orf46Q6P387 395 aa7.08□□□□□ -1.28
VPS13A-207ENST00000419472 TNFRSF10BO14763 440 aa7.08□□□□□ -1.28
VPS13A-207ENST00000419472 ENOX2Q16206 610 aaKnown RBP7.08□□□□□ -1.28
VPS13A-207ENST00000419472 TBCELQ5QJ74 424 aa7.08□□□□□ -1.28
VPS13A-207ENST00000419472 PTCRAQ6ISU1 281 aaPredicted RBP7.08□□□□□ -1.28
VPS13A-207ENST00000419472 ARMC2Q8NEN0 867 aa7.08□□□□□ -1.28
VPS13A-207ENST00000419472 NKX2-3Q8TAU0 364 aa7.08□□□□□ -1.28
VPS13A-207ENST00000419472 A0A1W2PRU2 124 aa7.08□□□□□ -1.28
VPS13A-207ENST00000419472 STK10O94804 968 aaKnown RBP7.08□□□□□ -1.28
VPS13A-207ENST00000419472 IGFBP4P22692 258 aa7.08□□□□□ -1.28
VPS13A-207ENST00000419472 GNA15P30679 374 aa7.08□□□□□ -1.28
VPS13A-207ENST00000419472 COX20Q5RI15 118 aa7.08□□□□□ -1.28
VPS13A-207ENST00000419472 ERCC6Q03468 1493 aa7.07□□□□□ -1.28
VPS13A-207ENST00000419472 FOXO3O43524 673 aa7.07□□□□□ -1.28
VPS13A-207ENST00000419472 MZF1P28698 734 aaPredicted RBP7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms