RNA–Protein interactions for RNA: ENSMUST00000035935.8

Ccdc40-201, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc40, Length 4,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-201ENSMUST00000035935 Edc4Q3UJB9 1406 aaKnown RBP12.17□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 AidaQ8C4Q6 305 aa12.17□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 CenppQ9CZ92 286 aa12.17□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Bcar3Q9QZK2 820 aa12.17□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Mcm10Q0VBD2 885 aa12.16□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Vps53Q8CCB4 832 aa12.16□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Gtf2a1Q99PM3 378 aa12.16□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Wdr33Q8K4P0 1330 aaKnown RBP12.16□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Gm10093D3YYI8 482 aa12.16□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Hdac1O09106 482 aaKnown RBP12.16□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Necab1Q8BG18 352 aa12.16□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Fsd2Q8BZ52 692 aa12.16□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Odf2A3KGV1 830 aaKnown RBP12.16□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Gtf2f1Q3THK3 508 aaKnown RBP12.16□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Sf3b2Q3UJB0 878 aaKnown RBP12.16□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 LlphQ9D945 130 aaKnown RBP12.16□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Map3k4O08648 1597 aa12.15□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Babam1Q3UI43 333 aa12.15□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Pms1Q8K119 917 aa12.15□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Nlrp3Q8R4B8 1033 aa12.15□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Ankrd50F7BE84 1390 aa12.15□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Mctp1E9PV86 951 aa12.15□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Vamp4O70480 141 aa12.15□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Amotl1Q9D4H4 968 aa12.15□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Pip4k2aO70172 405 aa12.15□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Plxnc1Q9QZC2 1574 aa12.15□□□□□ -0.46
Ccdc40-201ENSMUST00000035935 Fam13aQ8BGI4 693 aa12.15□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Slc5a1Q8C3K6 665 aa12.15□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Dnaaf4Q8R368 420 aa12.15□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Elp1Q7TT37 1333 aaKnown RBP12.14□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Kdm5cP41230 1554 aa12.14□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Cep131Q62036 1060 aa12.14□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Mrps27Q8BK72 415 aaKnown RBP12.14□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Eif4a2P10630 407 aa12.14□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 GpkowQ56A08 488 aa12.14□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Ankle2Q6P1H6 964 aa12.14□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 ApobrQ8VBT6 942 aa12.14□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Farp2Q91VS8 1065 aa12.14□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Mybbp1aQ7TPV4 1344 aaKnown RBP12.14□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Drc7Q6V3W6 876 aa12.14□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Ankib1Q6ZPS6 1085 aa12.14□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Fbxo2Q80UW2 297 aa12.14□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Mapk8ip1Q9WVI9 707 aa12.14□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Atp8b2P98199 1209 aa12.13□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Gnat3Q3V3I2 354 aa12.13□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Mns1Q61884 491 aa12.13□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 March6Q6ZQ89 909 aa12.13□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Fam50bQ9WTJ8 334 aa12.13□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Hmg20bQ9Z104 317 aa12.13□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Ddx54Q8K4L0 874 aaKnown RBP12.13□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Zrsr2Q62377 462 aaKnown RBP12.13□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Syce3B5KM66 88 aa12.12□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Abl1P00520 1123 aa12.12□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Pof1bQ8K4L4 587 aa12.12□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Ipo4Q8VI75 1082 aa12.12□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Abca16E9PWJ7 1678 aa12.12□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Ttc21aQ8C0S4 1314 aa12.12□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Map3k2Q61083 619 aa12.12□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Spty2d1Q68FG3 682 aa12.12□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Bag4Q8CI61 457 aa12.12□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Rrs1Q9CYH6 365 aaKnown RBP12.12□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Lmbr1Q9JIT0 490 aa12.12□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Pprc1Q6NZN1 1644 aa12.12□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Cyp26c1B2RXA7 518 aa12.12□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Kiaa0753Q6A000 959 aa12.12□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Samm50Q8BGH2 469 aa12.12□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Zscan20B2KFW1 1030 aa12.12□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Hmgb2P30681 210 aaKnown RBP12.11□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Nkx1-2P42580 305 aa12.11□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Prpf4bQ61136 1007 aaKnown RBP12.11□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Ercc6lQ8BHK9 1240 aa12.11□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 ZwintQ9CQU5 252 aa12.11□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Kdm3aQ6PCM1 1323 aa12.11□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Ppfia1B2RXQ2 1266 aa12.11□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Hfm1D3Z4R1 1434 aa12.11□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 TbcaP48428 108 aaKnown RBP12.11□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Pde4dQ01063 747 aa12.11□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Zranb1Q7M760 708 aa12.11□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Eif2ak4Q9QZ05 1648 aa12.11□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 KdrP35918 1367 aa12.11□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Atf7Q8R0S1 413 aa12.11□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Kif21bQ9QXL1 1668 aa12.1□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Kif3cO35066 796 aa12.1□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 EvcP57680 1005 aa12.1□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Taf7Q9R1C0 341 aa12.1□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Cul7Q8VE73 1689 aa12.1□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Plch2A2AP18 1501 aa12.1□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Limch1Q3UH68 1057 aa12.1□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Soga3Q6NZL0 945 aa12.1□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Nat10Q8K224 1024 aaKnown RBP12.1□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Igbp1bQ9QZ29 343 aa12.1□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Map3k19E9Q3S4 1311 aa12.1□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Anp32eP97822 260 aaKnown RBP12.09□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Jmjd4Q8BFT6 427 aa12.09□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Rbm5Q91YE7 815 aaKnown RBP12.09□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 FanclQ9CR14 375 aa12.09□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Ncbp1Q3UYV9 790 aaKnown RBP12.09□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Klhdc4Q921I2 584 aa12.09□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Ccdc43Q9CR29 222 aaKnown RBP12.09□□□□□ -0.47
Ccdc40-201ENSMUST00000035935 Tmem94Q7TSH8 1360 aa12.09□□□□□ -0.47
Retrieved 100 of 22,080 RNA–protein pairs in 19.2 ms