RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Ccdc173A0JLY1 547 aa20.55■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Exosc9Q9JHI7 438 aaKnown RBP20.55■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Dlg5E9Q9R9 1921 aa20.54■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Cdk19Q8BWD8 501 aa20.54■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Cps1Q8C196 1500 aa20.54■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Brpf1B2RRD7 1212 aa20.54■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Klhdc4Q921I2 584 aa20.54■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Hvcn1Q3U2S8 269 aa20.54■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Gemin5Q8BX17 1502 aaKnown RBP20.53■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Fam184aE9PW83 1143 aa20.53■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Kif3aP28741 701 aa20.53■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Oxsr1Q6P9R2 527 aa20.53■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Usp16Q99LG0 825 aa20.53■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Zfp251Q6PCX8 632 aa20.52■□□□□ 0.88
Ctcf-201ENSMUST00000005841 Wdr93Q402B2 695 aa20.51■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Utp18Q5SSI6 552 aaKnown RBP20.51■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Rnf214Q8BFU3 668 aaKnown RBP20.51■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Zfp804bA0A0G2JGH6 1343 aa20.51■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Prkar2bP31324 416 aa20.51■□□□□ 0.87
Ctcf-201ENSMUST00000005841 BcorQ8CGN4 1759 aa20.51■□□□□ 0.87
Ctcf-201ENSMUST00000005841 AnlnQ8K298 1121 aaKnown RBP20.5■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Cyp46a1Q9WVK8 500 aa20.5■□□□□ 0.87
Ctcf-201ENSMUST00000005841 FancaQ9JL70 1439 aa20.49■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Col22a1E9Q7P1 1613 aa20.49■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Vsig10D3YX43 558 aa20.49■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Bcar3Q9QZK2 820 aa20.49■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Triml2E9PW10 424 aa20.48■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Olfml1Q8BSH2 233 aa20.48■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Zscan22Q8BGS5 496 aa20.48■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Mcm10Q0VBD2 885 aa20.48■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Pik3c2aQ61194 1686 aa20.48■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Casz1Q9CWL2 1761 aa20.47■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Ddx19aQ61655 478 aaKnown RBP20.47■□□□□ 0.87
Ctcf-201ENSMUST00000005841 IbspQ61711 324 aa20.47■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Cabp2Q9JLK4 216 aa20.47■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Adcy5P84309 1262 aa20.46■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Noc3lQ8VI84 807 aaKnown RBP20.46■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Ahnak2E9PYB0 1738 aaKnown RBP20.46■□□□□ 0.87
Ctcf-201ENSMUST00000005841 CalcaP70160 136 aa20.46■□□□□ 0.87
Ctcf-201ENSMUST00000005841 Nup153E9Q3G8 1462 aaKnown RBP20.45■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Camta1A2A891 1682 aa20.45■□□□□ 0.86
Ctcf-201ENSMUST00000005841 CemipQ8BI06 1361 aa20.45■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Cdk4P30285 303 aa20.45■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Rangap1P46061 589 aaKnown RBP20.45■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Add3Q9QYB5 706 aaKnown RBP20.45■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Pdzrn3Q69ZS0 1063 aa20.45■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Cavin1O54724 392 aa20.44■□□□□ 0.86
Ctcf-201ENSMUST00000005841 EvcP57680 1005 aa20.44■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Strn4P58404 760 aa20.44■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Pmfbp1Q9WVQ0 1022 aa20.44■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Pnpla7A2AJ88 1352 aa20.44■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Q9D2X8 372 aa20.44■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Plcd3Q8K2J0 785 aa20.44■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Add2Q9QYB8 725 aa20.44■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Parp14Q2EMV9 1817 aa20.44■□□□□ 0.86
Ctcf-201ENSMUST00000005841 RictorQ6QI06 1708 aa20.43■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Mmp8O70138 465 aa20.43■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Zeb2Q9R0G7 1215 aa20.43■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Hoxb7P09024 217 aa20.43■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Ccdc162pQ0VG85 912 aa20.42■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Nxf2Q4ZGD8 691 aa20.42■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Rab3gap1Q80UJ7 981 aa20.42■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Rims2Q9EQZ7 1530 aa20.42■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Idi2Q8BFZ6 227 aa20.41■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Atp2b2Q9R0K7 1198 aa20.41■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Igsf1Q7TQA1 1317 aa20.41■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Zkscan2G3X952 960 aa20.41■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Nucb2P81117 420 aa20.41■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Fam43aQ8BUP8 424 aa20.41■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Cpa2Q504N0 417 aa20.41■□□□□ 0.86
Ctcf-201ENSMUST00000005841 PzpQ61838 1495 aa20.4■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Kcnb2A6H8H5 907 aa20.4■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Fbxo2Q80UW2 297 aa20.4■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Stk26Q99JT2 416 aa20.4■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Brpf3B2KF05 1204 aaKnown RBP20.4■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Dync1i1O88485 628 aa20.4■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Stac3Q8BZ71 360 aa20.4■□□□□ 0.86
Ctcf-201ENSMUST00000005841 BccipQ9CWI3 316 aa20.4■□□□□ 0.86
Ctcf-201ENSMUST00000005841 Kansl3A2RSY1 903 aaKnown RBP20.39■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Hmx1O70218 332 aa20.39■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Unc5clQ6R653 518 aa20.39■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Naa30Q8CES0 364 aa20.39■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Ube2hP62257 183 aa20.39■□□□□ 0.85
Ctcf-201ENSMUST00000005841 St18Q80TY4 1045 aa20.39■□□□□ 0.85
Ctcf-201ENSMUST00000005841 EzrP26040 586 aaKnown RBP20.38■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Atp6v1dP57746 247 aa20.38■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Yeats2Q3TUF7 1407 aa20.38■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Ccne1Q61457 408 aa20.38■□□□□ 0.85
Ctcf-201ENSMUST00000005841 SnrkQ8VDU5 748 aa20.38■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Tnnt2P50752 301 aa20.38■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Rufy3Q9D394 469 aa20.38■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Ptpdc1Q6NZK8 747 aa20.37■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Filip1lQ6P6L0 1131 aa20.37■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Shq1Q7TMX5 569 aa20.37■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Wdr24Q8CFJ9 790 aa20.37■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Stk36Q69ZM6 1316 aa20.37■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Znf316Q6PGE4 1016 aa20.37■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Spata31d1bE9QA57 1361 aa20.36■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Fam13bQ8K2H3 851 aa20.36■□□□□ 0.85
Ctcf-201ENSMUST00000005841 Col16a1Q8BLX7 1580 aa20.36■□□□□ 0.85
Retrieved 100 of 22,080 RNA–protein pairs in 66.3 ms