Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 AC112497.1-201ENST00000624824 639 ntBASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTDP1Q9Y5B0 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
CTDP1Q9Y5B0 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.07
CTDP1Q9Y5B0 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTDP1Q9Y5B0 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 RCC2P3-201ENST00000418112 1537 ntBASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 TEX21P-204ENST00000641479 1693 ntBASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.69■■□□□ 1.06
CTDP1Q9Y5B0 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 FXN-203ENST00000396366 922 ntTSL 2 BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 HYMAI.1-201ENST00000620949 238 ntBASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.68■■□□□ 1.06
CTDP1Q9Y5B0 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTDP1Q9Y5B0 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTDP1Q9Y5B0 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTDP1Q9Y5B0 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTDP1Q9Y5B0 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CTDP1Q9Y5B0 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms