Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC39Q9UFE4 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC39Q9UFE4 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CCDC39Q9UFE4 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC39Q9UFE4 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC39Q9UFE4 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC39Q9UFE4 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 POU5F1P3-201ENST00000428824 1078 ntBASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 C1QL1P1-201ENST00000568105 661 ntBASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 AC067852.2-201ENST00000590513 2313 ntBASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 SDHAP1-207ENST00000440850 2000 ntBASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC39Q9UFE4 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 AC141586.3-201ENST00000562166 1838 ntBASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 MIR4651-201ENST00000582622 73 ntBASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC39Q9UFE4 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
CCDC39Q9UFE4 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
CCDC39Q9UFE4 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.7■■□□□ 1.07
CCDC39Q9UFE4 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 TEX21P-204ENST00000641479 1693 ntBASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 AC128676.1-201ENST00000454392 318 ntBASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 KRT16P5-201ENST00000455284 522 ntBASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 AC133681.1-201ENST00000465482 601 ntBASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC39Q9UFE4 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 FP475955.4-201ENST00000623131 1990 ntBASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CCDC39Q9UFE4 AC124016.1-201ENST00000609552 612 ntBASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms