Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 LTB4R2-202ENST00000528054 3092 ntBASIC18.57■□□□□ 0.56
MKS1Q9NXB0 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 LINC00896-202ENST00000609602 2128 ntBASIC18.56■□□□□ 0.56
MKS1Q9NXB0 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MKS1Q9NXB0 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.55■□□□□ 0.56
MKS1Q9NXB0 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.54■□□□□ 0.56
MKS1Q9NXB0 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MKS1Q9NXB0 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
MKS1Q9NXB0 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.53■□□□□ 0.56
MKS1Q9NXB0 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
MKS1Q9NXB0 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
MKS1Q9NXB0 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.53■□□□□ 0.56
MKS1Q9NXB0 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
MKS1Q9NXB0 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MKS1Q9NXB0 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms